Divergent CCT motif
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 105 |
| AccI | GTMKAC | 1 cut(s) | 343 |
| AccII | CGCG | 1 cut(s) | 92 |
| AciI | CCGC | 7 cut(s) | 21, 105, 115, 148, 223, 260, 736 |
| AclWI | GGATC | 1 cut(s) | 45 |
| AcoI | YGGCCR | 1 cut(s) | 220 |
| AcsI | RAATTY | 1 cut(s) | 413 |
| AcuI | CTGAAG | 1 cut(s) | 95 |
| AcyI | GRCGYC | 1 cut(s) | 118 |
| AfaI | GTAC | 2 cut(s) | 302, 308 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 74, 104, 147, 385, 722 |
| AflIII | ACRYGT | 1 cut(s) | 346 |
| AgsI | TTSAA | 2 cut(s) | 479, 626 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 201, 233 |
| AluBI | AGCT | 5 cut(s) | 240, 485, 534, 544, 580 |
| AluI | AGCT | 5 cut(s) | 240, 485, 534, 544, 580 |
| Alw21I | GWGCWC | 1 cut(s) | 242 |
| Alw26I | GTCTC | 1 cut(s) | 761 |
| AlwI | GGATC | 1 cut(s) | 45 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 310, 619 |
| AoxI | GGCC | 2 cut(s) | 220, 676 |
| ApeKI | GCWGC | 5 cut(s) | 394, 403, 534, 544, 613 |
| ApoI | RAATTY | 1 cut(s) | 413 |
| AspLEI | GCGC | 2 cut(s) | 94, 271 |
| AsuC2I | CCSGG | 2 cut(s) | 141, 227 |
| AsuHPI | GGTGA | 1 cut(s) | 380 |
| BanII | GRGCYC | 2 cut(s) | 242, 391 |
| Bbv12I | GWGCWC | 1 cut(s) | 242 |
| BbvI | GCAGC | 5 cut(s) | 406, 415, 521, 531, 625 |
| BccI | CCATC | 1 cut(s) | 649 |
| BceAI | ACGGC | 1 cut(s) | 273 |
| BciVI | GTATCC | 1 cut(s) | 648 |
| BcnI | CCSGG | 2 cut(s) | 141, 227 |
| BcoDI | GTCTC | 1 cut(s) | 761 |
| BfaI | CTAG | 1 cut(s) | 794 |
| BfoI | RGCGCY | 1 cut(s) | 272 |
| BfuI | GTATCC | 1 cut(s) | 648 |
| BglII | AGATCT | 2 cut(s) | 329, 557 |
| BisI | GCNGC | 7 cut(s) | 116, 223, 395, 404, 535, 545, 614 |
| BlpI | GCTNAGC | 1 cut(s) | 390 |
| BlsI | GCNGC | 7 cut(s) | 117, 224, 396, 405, 536, 546, 615 |
| Bme1390I | CCNGG | 2 cut(s) | 141, 227 |
| BmiI | GGNNCC | 1 cut(s) | 79 |
| BmrFI | CCNGG | 2 cut(s) | 141, 227 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 265, 297 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 390 |
| BpuEI | CTTGAG | 1 cut(s) | 767 |
| BpuMI | CCSGG | 2 cut(s) | 141, 227 |
| BsaHI | GRCGYC | 1 cut(s) | 118 |
| BsaJI | CCNNGG | 3 cut(s) | 139, 188, 696 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 74, 104, 147, 385, 722 |
| Bse1I | ACTGG | 1 cut(s) | 304 |
| BseDI | CCNNGG | 3 cut(s) | 139, 188, 696 |
| BseGI | GGATG | 1 cut(s) | 166 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 74, 104, 147, 385, 722 |
| BseMII | CTCAG | 5 cut(s) | 263, 296, 404, 444, 477 |
| BseNI | ACTGG | 1 cut(s) | 304 |
| BseRI | GAGGAG | 2 cut(s) | 278, 731 |
| BseXI | GCAGC | 5 cut(s) | 406, 415, 521, 531, 625 |
| Bsh1236I | CGCG | 1 cut(s) | 92 |
| BshFI | GGCC | 2 cut(s) | 222, 678 |
| BsiHKAI | GWGCWC | 1 cut(s) | 242 |
| BsiSI | CCGG | 4 cut(s) | 75, 141, 226, 379 |
| BslFI | GGGAC | 2 cut(s) | 105, 177 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 74, 104, 147, 385, 722 |
| BsmAI | GTCTC | 1 cut(s) | 761 |
| BsmFI | GGGAC | 2 cut(s) | 105, 177 |
| BsnI | GGCC | 2 cut(s) | 222, 678 |
| Bsp1286I | GDGCHC | 2 cut(s) | 242, 391 |
| Bsp143I | GATC | 3 cut(s) | 37, 329, 557 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 390 |
| Bsp19I | CCATGG | 1 cut(s) | 188 |
| BspACI | CCGC | 7 cut(s) | 21, 105, 115, 148, 223, 260, 736 |
| BspANI | GGCC | 2 cut(s) | 222, 678 |
| BspCNI | CTCAG | 5 cut(s) | 264, 295, 403, 443, 478 |
| BspFNI | CGCG | 1 cut(s) | 92 |
| BspLI | GGNNCC | 1 cut(s) | 79 |
| BspPI | GGATC | 1 cut(s) | 45 |
| BsrBI | CCGCTC | 1 cut(s) | 105 |
| BsrI | ACTGG | 1 cut(s) | 304 |
| BssECI | CCNNGG | 3 cut(s) | 139, 188, 696 |
| BssMI | GATC | 3 cut(s) | 37, 329, 557 |
| BssNI | GRCGYC | 1 cut(s) | 118 |
| BssT1I | CCWWGG | 2 cut(s) | 188, 696 |
| Bst4CI | ACNGT | 2 cut(s) | 72, 763 |
| BstACI | GRCGYC | 1 cut(s) | 118 |
| BstC8I | GCNNGC | 4 cut(s) | 146, 296, 532, 680 |
| BstDEI | CTNAG | 5 cut(s) | 272, 282, 390, 430, 486 |
| BstDSI | CCRYGG | 1 cut(s) | 188 |
| BstF5I | GGATG | 1 cut(s) | 166 |
| BstFNI | CGCG | 1 cut(s) | 92 |
| BstH2I | RGCGCY | 1 cut(s) | 272 |
| BstHHI | GCGC | 2 cut(s) | 94, 271 |
| BstKTI | GATC | 3 cut(s) | 40, 332, 560 |
| BstMAI | GTCTC | 1 cut(s) | 761 |
| BstMBI | GATC | 3 cut(s) | 37, 329, 557 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 266, 400, 403, 514, 688 |
| BstNSI | RCATGY | 2 cut(s) | 298, 350 |
| BstSCI | CCNGG | 2 cut(s) | 139, 225 |
| BstUI | CGCG | 1 cut(s) | 92 |
| BstV1I | GCAGC | 5 cut(s) | 406, 415, 521, 531, 625 |
| BstX2I | RGATCY | 3 cut(s) | 37, 329, 557 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 189 |
| BstYI | RGATCY | 3 cut(s) | 37, 329, 557 |
| BsuI | GTATCC | 1 cut(s) | 648 |
| BsuRI | GGCC | 2 cut(s) | 222, 678 |
| BtgI | CCRYGG | 1 cut(s) | 188 |
| BtsCI | GGATG | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 4 cut(s) | 146, 296, 532, 680 |
| CaiI | CAGNNNCTG | 2 cut(s) | 310, 619 |
| CfoI | GCGC | 2 cut(s) | 94, 271 |
| CseI | GACGC | 2 cut(s) | 98, 107 |
| Csp6I | GTAC | 2 cut(s) | 301, 307 |
| CviAII | CATG | 4 cut(s) | 189, 295, 347, 360 |
| CviQI | GTAC | 2 cut(s) | 301, 307 |
| DdeI | CTNAG | 5 cut(s) | 272, 282, 390, 430, 486 |
| DpnI | GATC | 3 cut(s) | 39, 331, 559 |
| DpnII | GATC | 3 cut(s) | 37, 329, 557 |
| EaeI | YGGCCR | 1 cut(s) | 220 |
| EciI | GGCGGA | 1 cut(s) | 275 |
| Ecl136II | GAGCTC | 1 cut(s) | 240 |
| Eco130I | CCWWGG | 2 cut(s) | 188, 696 |
| Eco24I | GRGCYC | 2 cut(s) | 242, 391 |
| Eco53kI | GAGCTC | 1 cut(s) | 240 |
| Eco57I | CTGAAG | 1 cut(s) | 95 |
| EcoICRI | GAGCTC | 1 cut(s) | 240 |
| EcoT14I | CCWWGG | 2 cut(s) | 188, 696 |
| EcoT38I | GRGCYC | 2 cut(s) | 242, 391 |
| ErhI | CCWWGG | 2 cut(s) | 188, 696 |
| FaeI | CATG | 4 cut(s) | 192, 298, 350, 363 |
| FaiI | YATR | 9 cut(s) | 184, 190, 296, 348, 361, 471, 495, 501, 720 |
| FaqI | GGGAC | 2 cut(s) | 105, 177 |
| FatI | CATG | 4 cut(s) | 188, 294, 346, 359 |
| FauI | CCCGC | 1 cut(s) | 743 |
| FblI | GTMKAC | 1 cut(s) | 343 |
| Fnu4HI | GCNGC | 7 cut(s) | 116, 223, 395, 404, 535, 545, 614 |
| FokI | GGATG | 1 cut(s) | 153 |
| FriOI | GRGCYC | 2 cut(s) | 242, 391 |
| Fsp4HI | GCNGC | 7 cut(s) | 116, 223, 395, 404, 535, 545, 614 |
| FspBI | CTAG | 1 cut(s) | 794 |
| GlaI | GCGC | 2 cut(s) | 93, 270 |
| GluI | GCNGC | 7 cut(s) | 116, 223, 395, 404, 535, 545, 614 |
| HaeII | RGCGCY | 1 cut(s) | 272 |
| HaeIII | GGCC | 2 cut(s) | 222, 678 |
| HapII | CCGG | 4 cut(s) | 75, 141, 226, 379 |
| HgaI | GACGC | 2 cut(s) | 98, 107 |
| HhaI | GCGC | 2 cut(s) | 94, 271 |
| Hin1I | GRCGYC | 1 cut(s) | 118 |
| Hin1II | CATG | 4 cut(s) | 192, 298, 350, 363 |
| Hin6I | GCGC | 2 cut(s) | 92, 269 |
| HinP1I | GCGC | 2 cut(s) | 92, 269 |
| HincII | GTYRAC | 1 cut(s) | 344 |
| HindII | GTYRAC | 1 cut(s) | 344 |
| HinfI | GANTC | 2 cut(s) | 490, 797 |
| HpaII | CCGG | 4 cut(s) | 75, 141, 226, 379 |
| HphI | GGTGA | 1 cut(s) | 380 |
| Hpy166II | GTNNAC | 2 cut(s) | 344, 672 |
| Hpy188I | TCNGA | 6 cut(s) | 82, 285, 334, 433, 649, 802 |
| Hpy8I | GTNNAC | 2 cut(s) | 344, 672 |
| Hpy99I | CGWCG | 3 cut(s) | 92, 247, 345 |
| HpyCH4III | ACNGT | 2 cut(s) | 72, 763 |
| HpyCH4IV | ACGT | 1 cut(s) | 50 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 266, 400, 403, 514, 688 |
| HpyF3I | CTNAG | 5 cut(s) | 272, 282, 390, 430, 486 |
| HpySE526I | ACGT | 1 cut(s) | 50 |
| Hsp92I | GRCGYC | 1 cut(s) | 118 |
| Hsp92II | CATG | 4 cut(s) | 192, 298, 350, 363 |
| HspAI | GCGC | 2 cut(s) | 92, 269 |
| Kzo9I | GATC | 3 cut(s) | 37, 329, 557 |
| LmnI | GCTCC | 1 cut(s) | 83 |
| Lsp1109I | GCAGC | 5 cut(s) | 406, 415, 521, 531, 625 |
| MaeI | CTAG | 1 cut(s) | 794 |
| MaeII | ACGT | 1 cut(s) | 50 |
| MalI | GATC | 3 cut(s) | 39, 331, 559 |
| MbiI | CCGCTC | 1 cut(s) | 105 |
| MboI | GATC | 3 cut(s) | 37, 329, 557 |
| MboII | GAAGA | 4 cut(s) | 218, 599, 763, 788 |
| MflI | RGATCY | 3 cut(s) | 37, 329, 557 |
| MhlI | GDGCHC | 2 cut(s) | 242, 391 |
| MluCI | AATT | 1 cut(s) | 413 |
| MmeI | TCCRAC | 1 cut(s) | 590 |
| MseI | TTAA | 1 cut(s) | 176 |
| MslI | CAYNNNNRTG | 2 cut(s) | 187, 498 |
| MspA1I | CMGCKG | 1 cut(s) | 115 |
| MspI | CCGG | 4 cut(s) | 75, 141, 226, 379 |
| MspR9I | CCNGG | 2 cut(s) | 141, 227 |
| MvnI | CGCG | 1 cut(s) | 92 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 266, 400, 403, 514, 688 |
| NciI | CCSGG | 2 cut(s) | 141, 227 |
| NcoI | CCATGG | 1 cut(s) | 188 |
| NdeII | GATC | 3 cut(s) | 37, 329, 557 |
| NlaIII | CATG | 4 cut(s) | 192, 298, 350, 363 |
| NlaIV | GGNNCC | 1 cut(s) | 79 |
| NspI | RCATGY | 2 cut(s) | 298, 350 |
| PaeI | GCATGC | 1 cut(s) | 298 |
| PciI | ACATGT | 1 cut(s) | 346 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 242 |
| PfeI | GAWTC | 2 cut(s) | 490, 797 |
| PkrI | GCNGC | 7 cut(s) | 117, 224, 396, 405, 536, 546, 615 |
| PscI | ACATGT | 1 cut(s) | 346 |
| Psp124BI | GAGCTC | 1 cut(s) | 242 |
| PspN4I | GGNNCC | 1 cut(s) | 79 |
| PstNI | CAGNNNCTG | 2 cut(s) | 310, 619 |
| PsuI | RGATCY | 3 cut(s) | 37, 329, 557 |
| RsaI | GTAC | 2 cut(s) | 302, 308 |
| RsaNI | GTAC | 2 cut(s) | 301, 307 |
| RseI | CAYNNNNRTG | 2 cut(s) | 187, 498 |
| SacI | GAGCTC | 1 cut(s) | 242 |
| SalI | GTCGAC | 1 cut(s) | 342 |
| SaqAI | TTAA | 1 cut(s) | 176 |
| SatI | GCNGC | 7 cut(s) | 116, 223, 395, 404, 535, 545, 614 |
| Sau3AI | GATC | 3 cut(s) | 37, 329, 557 |
| ScrFI | CCNGG | 2 cut(s) | 141, 227 |
| SduI | GDGCHC | 2 cut(s) | 242, 391 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 187, 498 |
| SmlI | CTYRAG | 1 cut(s) | 746 |
| SmoI | CTYRAG | 1 cut(s) | 746 |
| SphI | GCATGC | 1 cut(s) | 298 |
| Sse9I | AATT | 1 cut(s) | 413 |
| SsiI | CCGC | 7 cut(s) | 21, 105, 115, 148, 223, 260, 736 |
| SspMI | CTAG | 1 cut(s) | 794 |
| SstI | GAGCTC | 1 cut(s) | 242 |
| StyD4I | CCNGG | 2 cut(s) | 139, 225 |
| StyI | CCWWGG | 2 cut(s) | 188, 696 |
| TaaI | ACNGT | 2 cut(s) | 72, 763 |
| TaiI | ACGT | 1 cut(s) | 53 |
| TaqI | TCGA | 3 cut(s) | 236, 245, 343 |
| TasI | AATT | 1 cut(s) | 413 |
| TauI | GCSGC | 2 cut(s) | 118, 225 |
| TfiI | GAWTC | 2 cut(s) | 490, 797 |
| Tru1I | TTAA | 1 cut(s) | 176 |
| Tru9I | TTAA | 1 cut(s) | 176 |
| TseI | GCWGC | 5 cut(s) | 394, 403, 534, 544, 613 |
| TspDTI | ATGAA | 5 cut(s) | 425, 482, 486, 608, 789 |
| TspGWI | ACGGA | 3 cut(s) | 45, 50, 173 |
| XapI | RAATTY | 1 cut(s) | 413 |
| XceI | RCATGY | 2 cut(s) | 298, 350 |
| XmiI | GTMKAC | 1 cut(s) | 343 |
| XspI | CTAG | 1 cut(s) | 794 |