DNA recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 192 |
| AcsI | RAATTY | 1 cut(s) | 199 |
| AcuI | CTGAAG | 1 cut(s) | 37 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 268 |
| AgsI | TTSAA | 4 cut(s) | 74, 207, 238, 376 |
| AjnI | CCWGG | 1 cut(s) | 241 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 114, 146 |
| Alw26I | GTCTC | 1 cut(s) | 74 |
| AlwI | GGATC | 1 cut(s) | 192 |
| AoxI | GGCC | 1 cut(s) | 10 |
| ApoI | RAATTY | 1 cut(s) | 199 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 202 |
| AspS9I | GGNCC | 1 cut(s) | 10 |
| AsuHPI | GGTGA | 1 cut(s) | 52 |
| BbsI | GAAGAC | 1 cut(s) | 153 |
| BciT130I | CCWGG | 1 cut(s) | 243 |
| BclI | TGATCA | 1 cut(s) | 85 |
| BcoDI | GTCTC | 1 cut(s) | 74 |
| Bme1390I | CCNGG | 1 cut(s) | 243 |
| BmgT120I | GGNCC | 1 cut(s) | 10 |
| BmiI | GGNNCC | 1 cut(s) | 11 |
| BmrFI | CCNGG | 1 cut(s) | 243 |
| BpiI | GAAGAC | 1 cut(s) | 153 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 268 |
| Bse1I | ACTGG | 1 cut(s) | 33 |
| BseBI | CCWGG | 1 cut(s) | 243 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 268 |
| BseNI | ACTGG | 1 cut(s) | 33 |
| BshFI | GGCC | 1 cut(s) | 12 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 268 |
| BsmAI | GTCTC | 1 cut(s) | 74 |
| BsnI | GGCC | 1 cut(s) | 12 |
| Bsp143I | GATC | 2 cut(s) | 85, 184 |
| BspANI | GGCC | 1 cut(s) | 12 |
| BspLI | GGNNCC | 1 cut(s) | 11 |
| BspPI | GGATC | 1 cut(s) | 192 |
| BsrI | ACTGG | 1 cut(s) | 33 |
| BssMI | GATC | 2 cut(s) | 85, 184 |
| Bst2UI | CCWGG | 1 cut(s) | 243 |
| Bst4CI | ACNGT | 2 cut(s) | 64, 220 |
| Bst6I | CTCTTC | 1 cut(s) | 353 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 266 |
| BstKTI | GATC | 2 cut(s) | 88, 187 |
| BstMAI | GTCTC | 1 cut(s) | 74 |
| BstMBI | GATC | 2 cut(s) | 85, 184 |
| BstNI | CCWGG | 1 cut(s) | 243 |
| BstNSI | RCATGY | 1 cut(s) | 98 |
| BstSCI | CCNGG | 1 cut(s) | 241 |
| BstV2I | GAAGAC | 1 cut(s) | 153 |
| BsuRI | GGCC | 1 cut(s) | 12 |
| BtsIMutI | CAGTG | 1 cut(s) | 40 |
| Cfr13I | GGNCC | 1 cut(s) | 10 |
| CviAII | CATG | 2 cut(s) | 95, 141 |
| CviJI | RGCY | 2 cut(s) | 12, 241 |
| CviKI_1 | RGCY | 2 cut(s) | 12, 241 |
| DpnI | GATC | 2 cut(s) | 87, 186 |
| DpnII | GATC | 2 cut(s) | 85, 184 |
| DraI | TTTAAA | 1 cut(s) | 414 |
| Eam1104I | CTCTTC | 1 cut(s) | 353 |
| EarI | CTCTTC | 1 cut(s) | 353 |
| Eco32I | GATATC | 1 cut(s) | 313 |
| Eco57I | CTGAAG | 1 cut(s) | 37 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 266 |
| EcoRII | CCWGG | 1 cut(s) | 241 |
| EcoRV | GATATC | 1 cut(s) | 313 |
| FaeI | CATG | 2 cut(s) | 98, 144 |
| FaiI | YATR | 5 cut(s) | 96, 142, 266, 277, 347 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 187, 219 |
| FatI | CATG | 2 cut(s) | 94, 140 |
| FbaI | TGATCA | 1 cut(s) | 85 |
| HaeIII | GGCC | 1 cut(s) | 12 |
| Hin1II | CATG | 2 cut(s) | 98, 144 |
| HinfI | GANTC | 2 cut(s) | 57, 135 |
| HphI | GGTGA | 1 cut(s) | 52 |
| Hpy166II | GTNNAC | 1 cut(s) | 297 |
| Hpy188I | TCNGA | 1 cut(s) | 56 |
| Hpy188III | TCNNGA | 1 cut(s) | 160 |
| Hpy8I | GTNNAC | 1 cut(s) | 297 |
| HpyAV | CCTTC | 3 cut(s) | 61, 207, 358 |
| HpyCH4III | ACNGT | 2 cut(s) | 64, 220 |
| HpyCH4IV | ACGT | 1 cut(s) | 424 |
| HpyCH4V | TGCA | 2 cut(s) | 98, 171 |
| HpySE526I | ACGT | 1 cut(s) | 424 |
| Hsp92II | CATG | 2 cut(s) | 98, 144 |
| Ksp22I | TGATCA | 1 cut(s) | 85 |
| Kzo9I | GATC | 2 cut(s) | 85, 184 |
| LpnPI | CCDG | 4 cut(s) | 46, 145, 228, 255 |
| MaeII | ACGT | 1 cut(s) | 424 |
| MaeIII | GTNAC | 1 cut(s) | 58 |
| MalI | GATC | 2 cut(s) | 87, 186 |
| MboI | GATC | 2 cut(s) | 85, 184 |
| MboII | GAAGA | 5 cut(s) | 86, 134, 158, 195, 370 |
| MluCI | AATT | 4 cut(s) | 199, 207, 233, 368 |
| MlyI | GAGTC | 1 cut(s) | 66 |
| MnlI | CCTC | 3 cut(s) | 262, 351, 354 |
| MroXI | GAANNNNTTC | 1 cut(s) | 202 |
| MseI | TTAA | 3 cut(s) | 104, 413, 427 |
| MspR9I | CCNGG | 1 cut(s) | 243 |
| MvaI | CCWGG | 1 cut(s) | 243 |
| NdeII | GATC | 2 cut(s) | 85, 184 |
| NlaIII | CATG | 2 cut(s) | 98, 144 |
| NlaIV | GGNNCC | 1 cut(s) | 11 |
| NmuCI | GTSAC | 1 cut(s) | 58 |
| NspI | RCATGY | 1 cut(s) | 98 |
| PdmI | GAANNNNTTC | 1 cut(s) | 202 |
| PfeI | GAWTC | 1 cut(s) | 135 |
| PleI | GAGTC | 1 cut(s) | 65 |
| PpsI | GAGTC | 1 cut(s) | 65 |
| Psp6I | CCWGG | 1 cut(s) | 241 |
| PspGI | CCWGG | 1 cut(s) | 241 |
| PspN4I | GGNNCC | 1 cut(s) | 11 |
| PspPI | GGNCC | 1 cut(s) | 10 |
| SaqAI | TTAA | 3 cut(s) | 104, 413, 427 |
| Sau3AI | GATC | 2 cut(s) | 85, 184 |
| Sau96I | GGNCC | 1 cut(s) | 10 |
| SchI | GAGTC | 1 cut(s) | 66 |
| ScrFI | CCNGG | 1 cut(s) | 243 |
| SetI | ASST | 1 cut(s) | 427 |
| Sse9I | AATT | 4 cut(s) | 199, 207, 233, 368 |
| StyD4I | CCNGG | 1 cut(s) | 241 |
| TaaI | ACNGT | 2 cut(s) | 64, 220 |
| TaiI | ACGT | 1 cut(s) | 427 |
| TaqI | TCGA | 1 cut(s) | 315 |
| TasI | AATT | 4 cut(s) | 199, 207, 233, 368 |
| TfiI | GAWTC | 1 cut(s) | 135 |
| Tru1I | TTAA | 3 cut(s) | 104, 413, 427 |
| Tru9I | TTAA | 3 cut(s) | 104, 413, 427 |
| TscAI | CASTG | 1 cut(s) | 40 |
| TseFI | GTSAC | 1 cut(s) | 58 |
| Tsp45I | GTSAC | 1 cut(s) | 58 |
| TspRI | CASTG | 1 cut(s) | 40 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 266 |
| XapI | RAATTY | 1 cut(s) | 199 |
| XceI | RCATGY | 1 cut(s) | 98 |
| XmnI | GAANNNNTTC | 1 cut(s) | 202 |