DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 195 - 309 | 9.6e-08 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 370 |
| AccI | GTMKAC | 1 cut(s) | 735 |
| AciI | CCGC | 1 cut(s) | 770 |
| AclWI | GGATC | 4 cut(s) | 205, 545, 558, 1007 |
| AcsI | RAATTY | 4 cut(s) | 39, 68, 223, 714 |
| AcuI | CTGAAG | 1 cut(s) | 419 |
| AfaI | GTAC | 3 cut(s) | 122, 144, 428 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 961 |
| AgsI | TTSAA | 8 cut(s) | 14, 23, 133, 484, 541, 594, 986, 1028 |
| AjnI | CCWGG | 2 cut(s) | 351, 507 |
| AluBI | AGCT | 3 cut(s) | 910, 934, 1142 |
| AluI | AGCT | 3 cut(s) | 910, 934, 1142 |
| Alw26I | GTCTC | 1 cut(s) | 410 |
| AlwI | GGATC | 4 cut(s) | 205, 545, 558, 1007 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 533, 1016 |
| AoxI | GGCC | 1 cut(s) | 889 |
| ApeKI | GCWGC | 2 cut(s) | 690, 767 |
| ApoI | RAATTY | 4 cut(s) | 39, 68, 223, 714 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 813, 845 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 301, 717 |
| AsuHPI | GGTGA | 1 cut(s) | 941 |
| BamHI | GGATCC | 1 cut(s) | 550 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 846, 878 |
| BbvI | GCAGC | 2 cut(s) | 677, 779 |
| BccI | CCATC | 3 cut(s) | 313, 376, 920 |
| BciT130I | CCWGG | 2 cut(s) | 353, 509 |
| BclI | TGATCA | 2 cut(s) | 73, 754 |
| BcoDI | GTCTC | 1 cut(s) | 410 |
| BfaI | CTAG | 2 cut(s) | 270, 1092 |
| BfmI | CTRYAG | 1 cut(s) | 972 |
| BfuAI | ACCTGC | 1 cut(s) | 370 |
| BglII | AGATCT | 1 cut(s) | 115 |
| BisI | GCNGC | 2 cut(s) | 691, 768 |
| BlsI | GCNGC | 2 cut(s) | 692, 769 |
| Bme1390I | CCNGG | 2 cut(s) | 353, 509 |
| BmiI | GGNNCC | 1 cut(s) | 552 |
| BmrFI | CCNGG | 2 cut(s) | 353, 509 |
| BoxI | GACNNNNGTC | 2 cut(s) | 161, 196 |
| BpuEI | CTTGAG | 2 cut(s) | 262, 896 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 961 |
| Bse1I | ACTGG | 3 cut(s) | 311, 330, 453 |
| Bse3DI | GCAATG | 1 cut(s) | 592 |
| BseBI | CCWGG | 2 cut(s) | 353, 509 |
| BseGI | GGATG | 1 cut(s) | 928 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 961 |
| BseMI | GCAATG | 1 cut(s) | 592 |
| BseNI | ACTGG | 3 cut(s) | 311, 330, 453 |
| BseXI | GCAGC | 2 cut(s) | 677, 779 |
| BseYI | CCCAGC | 2 cut(s) | 994, 1043 |
| BshFI | GGCC | 1 cut(s) | 891 |
| BslFI | GGGAC | 1 cut(s) | 1060 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 961 |
| BsmAI | GTCTC | 1 cut(s) | 410 |
| BsmFI | GGGAC | 1 cut(s) | 1060 |
| BsnI | GGCC | 1 cut(s) | 891 |
| Bsp143I | GATC | 7 cut(s) | 73, 115, 210, 550, 754, 839, 1012 |
| BspACI | CCGC | 1 cut(s) | 770 |
| BspANI | GGCC | 1 cut(s) | 891 |
| BspLI | GGNNCC | 1 cut(s) | 552 |
| BspMI | ACCTGC | 1 cut(s) | 370 |
| BspPI | GGATC | 4 cut(s) | 205, 545, 558, 1007 |
| BsrDI | GCAATG | 1 cut(s) | 592 |
| BsrI | ACTGG | 3 cut(s) | 311, 330, 453 |
| BssMI | GATC | 7 cut(s) | 73, 115, 210, 550, 754, 839, 1012 |
| Bst2UI | CCWGG | 2 cut(s) | 353, 509 |
| Bst4CI | ACNGT | 6 cut(s) | 125, 163, 529, 620, 804, 1159 |
| Bst6I | CTCTTC | 2 cut(s) | 226, 864 |
| BstC8I | GCNNGC | 1 cut(s) | 88 |
| BstF5I | GGATG | 1 cut(s) | 928 |
| BstKTI | GATC | 7 cut(s) | 76, 118, 213, 553, 757, 842, 1015 |
| BstMAI | GTCTC | 1 cut(s) | 410 |
| BstMBI | GATC | 7 cut(s) | 73, 115, 210, 550, 754, 839, 1012 |
| BstNI | CCWGG | 2 cut(s) | 353, 509 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 161, 196 |
| BstSCI | CCNGG | 2 cut(s) | 351, 507 |
| BstSFI | CTRYAG | 1 cut(s) | 972 |
| BstV1I | GCAGC | 2 cut(s) | 677, 779 |
| BstX2I | RGATCY | 4 cut(s) | 115, 210, 550, 1012 |
| BstYI | RGATCY | 4 cut(s) | 115, 210, 550, 1012 |
| BsuRI | GGCC | 1 cut(s) | 891 |
| BtsCI | GGATG | 1 cut(s) | 928 |
| BtsI | GCAGTG | 1 cut(s) | 264 |
| BtsIMutI | CAGTG | 3 cut(s) | 264, 318, 534 |
| BveI | ACCTGC | 1 cut(s) | 370 |
| Cac8I | GCNNGC | 1 cut(s) | 88 |
| CaiI | CAGNNNCTG | 2 cut(s) | 533, 1016 |
| CseI | GACGC | 1 cut(s) | 773 |
| Csp6I | GTAC | 3 cut(s) | 121, 143, 427 |
| CviAII | CATG | 7 cut(s) | 91, 283, 614, 674, 701, 739, 1118 |
| CviJI | RGCY | 7 cut(s) | 433, 490, 690, 891, 910, 934, 1142 |
| CviKI_1 | RGCY | 7 cut(s) | 433, 490, 690, 891, 910, 934, 1142 |
| CviQI | GTAC | 3 cut(s) | 121, 143, 427 |
| DpnI | GATC | 7 cut(s) | 75, 117, 212, 552, 756, 841, 1014 |
| DpnII | GATC | 7 cut(s) | 73, 115, 210, 550, 754, 839, 1012 |
| DraI | TTTAAA | 1 cut(s) | 336 |
| Eam1104I | CTCTTC | 2 cut(s) | 226, 864 |
| EarI | CTCTTC | 2 cut(s) | 226, 864 |
| Eco32I | GATATC | 1 cut(s) | 949 |
| Eco57I | CTGAAG | 1 cut(s) | 419 |
| EcoRII | CCWGG | 2 cut(s) | 351, 507 |
| EcoRV | GATATC | 1 cut(s) | 949 |
| FaeI | CATG | 7 cut(s) | 94, 286, 617, 677, 704, 742, 1121 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 702, 734 |
| FaqI | GGGAC | 1 cut(s) | 1060 |
| FatI | CATG | 7 cut(s) | 90, 282, 613, 673, 700, 738, 1117 |
| FauNDI | CATATG | 1 cut(s) | 960 |
| FbaI | TGATCA | 2 cut(s) | 73, 754 |
| FblI | GTMKAC | 1 cut(s) | 735 |
| Fnu4HI | GCNGC | 2 cut(s) | 691, 768 |
| FokI | GGATG | 1 cut(s) | 935 |
| Fsp4HI | GCNGC | 2 cut(s) | 691, 768 |
| FspBI | CTAG | 2 cut(s) | 270, 1092 |
| GluI | GCNGC | 2 cut(s) | 691, 768 |
| GsaI | CCCAGC | 2 cut(s) | 998, 1047 |
| HaeIII | GGCC | 1 cut(s) | 891 |
| HgaI | GACGC | 1 cut(s) | 773 |
| Hin1II | CATG | 7 cut(s) | 94, 286, 617, 677, 704, 742, 1121 |
| HincII | GTYRAC | 1 cut(s) | 280 |
| HindII | GTYRAC | 1 cut(s) | 280 |
| HinfI | GANTC | 5 cut(s) | 54, 176, 197, 732, 965 |
| HphI | GGTGA | 1 cut(s) | 941 |
| Hpy166II | GTNNAC | 2 cut(s) | 280, 736 |
| Hpy188I | TCNGA | 4 cut(s) | 156, 499, 731, 1075 |
| Hpy188III | TCNNGA | 5 cut(s) | 44, 600, 653, 913, 1092 |
| Hpy8I | GTNNAC | 2 cut(s) | 280, 736 |
| HpyAV | CCTTC | 2 cut(s) | 17, 1094 |
| HpyCH4III | ACNGT | 6 cut(s) | 125, 163, 529, 620, 804, 1159 |
| HpyCH4V | TGCA | 5 cut(s) | 220, 463, 585, 608, 819 |
| Hsp92II | CATG | 7 cut(s) | 94, 286, 617, 677, 704, 742, 1121 |
| Ksp22I | TGATCA | 2 cut(s) | 73, 754 |
| Kzo9I | GATC | 7 cut(s) | 73, 115, 210, 550, 754, 839, 1012 |
| LmnI | GCTCC | 1 cut(s) | 370 |
| Lsp1109I | GCAGC | 2 cut(s) | 677, 779 |
| MaeI | CTAG | 2 cut(s) | 270, 1092 |
| MaeIII | GTNAC | 2 cut(s) | 529, 558 |
| MalI | GATC | 7 cut(s) | 75, 117, 212, 552, 756, 841, 1014 |
| MboI | GATC | 7 cut(s) | 73, 115, 210, 550, 754, 839, 1012 |
| MboII | GAAGA | 5 cut(s) | 243, 512, 710, 881, 943 |
| MfeI | CAATTG | 1 cut(s) | 138 |
| MflI | RGATCY | 4 cut(s) | 115, 210, 550, 1012 |
| MlyI | GAGTC | 3 cut(s) | 206, 741, 974 |
| MmeI | TCCRAC | 1 cut(s) | 497 |
| MnlI | CCTC | 5 cut(s) | 229, 651, 881, 979, 1105 |
| MroXI | GAANNNNTTC | 2 cut(s) | 301, 717 |
| MseI | TTAA | 4 cut(s) | 227, 326, 335, 659 |
| MspA1I | CMGCKG | 2 cut(s) | 770, 1142 |
| MspR9I | CCNGG | 2 cut(s) | 353, 509 |
| MunI | CAATTG | 1 cut(s) | 138 |
| MvaI | CCWGG | 2 cut(s) | 353, 509 |
| NdeI | CATATG | 1 cut(s) | 960 |
| NdeII | GATC | 7 cut(s) | 73, 115, 210, 550, 754, 839, 1012 |
| NlaIII | CATG | 7 cut(s) | 94, 286, 617, 677, 704, 742, 1121 |
| NlaIV | GGNNCC | 1 cut(s) | 552 |
| NmeAIII | GCCGAG | 1 cut(s) | 666 |
| NmuCI | GTSAC | 2 cut(s) | 529, 558 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 649 |
| PdmI | GAANNNNTTC | 2 cut(s) | 301, 717 |
| PfeI | GAWTC | 2 cut(s) | 54, 176 |
| PfoI | TCCNGGA | 1 cut(s) | 507 |
| PkrI | GCNGC | 2 cut(s) | 692, 769 |
| PleI | GAGTC | 3 cut(s) | 205, 740, 973 |
| PpsI | GAGTC | 3 cut(s) | 205, 740, 973 |
| PshAI | GACNNNNGTC | 2 cut(s) | 161, 196 |
| Psp6I | CCWGG | 2 cut(s) | 351, 507 |
| PspFI | CCCAGC | 2 cut(s) | 994, 1043 |
| PspGI | CCWGG | 2 cut(s) | 351, 507 |
| PspN4I | GGNNCC | 1 cut(s) | 552 |
| PstNI | CAGNNNCTG | 2 cut(s) | 533, 1016 |
| PsuI | RGATCY | 4 cut(s) | 115, 210, 550, 1012 |
| PvuII | CAGCTG | 1 cut(s) | 1142 |
| RsaI | GTAC | 3 cut(s) | 122, 144, 428 |
| RsaNI | GTAC | 3 cut(s) | 121, 143, 427 |
| SaqAI | TTAA | 4 cut(s) | 227, 326, 335, 659 |
| SatI | GCNGC | 2 cut(s) | 691, 768 |
| Sau3AI | GATC | 7 cut(s) | 73, 115, 210, 550, 754, 839, 1012 |
| SchI | GAGTC | 3 cut(s) | 206, 741, 974 |
| ScrFI | CCNGG | 2 cut(s) | 353, 509 |
| SetI | ASST | 8 cut(s) | 354, 364, 389, 637, 912, 936, 982, 1144 |
| SfcI | CTRYAG | 1 cut(s) | 972 |
| SmlI | CTYRAG | 2 cut(s) | 241, 911 |
| SmoI | CTYRAG | 2 cut(s) | 241, 911 |
| SsiI | CCGC | 1 cut(s) | 770 |
| SspMI | CTAG | 2 cut(s) | 270, 1092 |
| StyD4I | CCNGG | 2 cut(s) | 351, 507 |
| TaaI | ACNGT | 6 cut(s) | 125, 163, 529, 620, 804, 1159 |
| TaqI | TCGA | 1 cut(s) | 652 |
| TatI | WGTACW | 1 cut(s) | 426 |
| TfiI | GAWTC | 2 cut(s) | 54, 176 |
| Tru1I | TTAA | 4 cut(s) | 227, 326, 335, 659 |
| Tru9I | TTAA | 4 cut(s) | 227, 326, 335, 659 |
| TscAI | CASTG | 3 cut(s) | 271, 318, 534 |
| TseFI | GTSAC | 2 cut(s) | 529, 558 |
| TseI | GCWGC | 2 cut(s) | 690, 767 |
| Tsp45I | GTSAC | 2 cut(s) | 529, 558 |
| TspDTI | ATGAA | 6 cut(s) | 107, 385, 536, 689, 1057, 1134 |
| TspRI | CASTG | 3 cut(s) | 271, 318, 534 |
| XapI | RAATTY | 4 cut(s) | 39, 68, 223, 714 |
| XbaI | TCTAGA | 1 cut(s) | 1091 |
| XmiI | GTMKAC | 1 cut(s) | 735 |
| XmnI | GAANNNNTTC | 2 cut(s) | 301, 717 |
| XspI | CTAG | 2 cut(s) | 270, 1092 |