DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 626, 663 |
| AciI | CCGC | 1 cut(s) | 194 |
| AcsI | RAATTY | 2 cut(s) | 205, 510 |
| AfaI | GTAC | 2 cut(s) | 334, 678 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 698 |
| AflIII | ACRYGT | 1 cut(s) | 338 |
| AgsI | TTSAA | 2 cut(s) | 33, 64 |
| AjnI | CCWGG | 1 cut(s) | 552 |
| AluBI | AGCT | 2 cut(s) | 125, 559 |
| AluI | AGCT | 2 cut(s) | 125, 559 |
| Alw26I | GTCTC | 2 cut(s) | 18, 642 |
| AoxI | GGCC | 2 cut(s) | 103, 172 |
| ApoI | RAATTY | 2 cut(s) | 205, 510 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 190, 222 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 483 |
| AspS9I | GGNCC | 2 cut(s) | 104, 173 |
| BbsI | GAAGAC | 1 cut(s) | 351 |
| BccI | CCATC | 6 cut(s) | 31, 62, 88, 136, 305, 580 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 633, 667 |
| BciT130I | CCWGG | 1 cut(s) | 554 |
| BciVI | GTATCC | 1 cut(s) | 739 |
| BcoDI | GTCTC | 2 cut(s) | 18, 642 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BfuI | GTATCC | 1 cut(s) | 739 |
| BisI | GCNGC | 1 cut(s) | 194 |
| BlsI | GCNGC | 1 cut(s) | 195 |
| Bme1390I | CCNGG | 1 cut(s) | 554 |
| BmgT120I | GGNCC | 2 cut(s) | 104, 173 |
| BmrFI | CCNGG | 1 cut(s) | 554 |
| BmsI | GCATC | 1 cut(s) | 299 |
| BpiI | GAAGAC | 1 cut(s) | 351 |
| BpmI | CTGGAG | 1 cut(s) | 575 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 91, 121, 160, 190 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 698 |
| Bse1I | ACTGG | 1 cut(s) | 607 |
| BseBI | CCWGG | 1 cut(s) | 554 |
| BseGI | GGATG | 1 cut(s) | 351 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 698 |
| BseNI | ACTGG | 1 cut(s) | 607 |
| BseRI | GAGGAG | 1 cut(s) | 660 |
| BsgI | GTGCAG | 1 cut(s) | 432 |
| Bsh1285I | CGRYCG | 1 cut(s) | 244 |
| BshFI | GGCC | 2 cut(s) | 105, 174 |
| BsiEI | CGRYCG | 1 cut(s) | 244 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 698 |
| BsmAI | GTCTC | 2 cut(s) | 18, 642 |
| BsnI | GGCC | 2 cut(s) | 105, 174 |
| Bsp1407I | TGTACA | 1 cut(s) | 676 |
| Bsp143I | GATC | 2 cut(s) | 138, 241 |
| BspACI | CCGC | 1 cut(s) | 194 |
| BspANI | GGCC | 2 cut(s) | 105, 174 |
| BspHI | TCATGA | 1 cut(s) | 367 |
| BsrGI | TGTACA | 1 cut(s) | 676 |
| BsrI | ACTGG | 1 cut(s) | 607 |
| BssMI | GATC | 2 cut(s) | 138, 241 |
| Bst2UI | CCWGG | 1 cut(s) | 554 |
| Bst4CI | ACNGT | 1 cut(s) | 565 |
| Bst6I | CTCTTC | 1 cut(s) | 601 |
| BstAUI | TGTACA | 1 cut(s) | 676 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 696 |
| BstF5I | GGATG | 1 cut(s) | 351 |
| BstKTI | GATC | 2 cut(s) | 141, 244 |
| BstMAI | GTCTC | 2 cut(s) | 18, 642 |
| BstMBI | GATC | 2 cut(s) | 138, 241 |
| BstMCI | CGRYCG | 1 cut(s) | 244 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 66, 102, 171 |
| BstNI | CCWGG | 1 cut(s) | 554 |
| BstNSI | RCATGY | 1 cut(s) | 342 |
| BstSCI | CCNGG | 1 cut(s) | 552 |
| BstV2I | GAAGAC | 1 cut(s) | 351 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 427 |
| BsuI | GTATCC | 1 cut(s) | 739 |
| BsuRI | GGCC | 2 cut(s) | 105, 174 |
| BtsCI | GGATG | 1 cut(s) | 351 |
| BtsI | GCAGTG | 1 cut(s) | 444 |
| BtsIMutI | CAGTG | 1 cut(s) | 444 |
| CciI | TCATGA | 1 cut(s) | 367 |
| Cfr13I | GGNCC | 2 cut(s) | 104, 173 |
| Csp6I | GTAC | 2 cut(s) | 333, 677 |
| CviAII | CATG | 4 cut(s) | 253, 339, 368, 476 |
| CviJI | RGCY | 8 cut(s) | 105, 125, 174, 230, 296, 517, 540, 559 |
| CviKI_1 | RGCY | 8 cut(s) | 105, 125, 174, 230, 296, 517, 540, 559 |
| CviQI | GTAC | 2 cut(s) | 333, 677 |
| DpnI | GATC | 2 cut(s) | 140, 243 |
| DpnII | GATC | 2 cut(s) | 138, 241 |
| Eam1104I | CTCTTC | 1 cut(s) | 601 |
| EarI | CTCTTC | 1 cut(s) | 601 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 696 |
| EcoO109I | RGGNCCY | 2 cut(s) | 104, 173 |
| EcoRI | GAATTC | 1 cut(s) | 510 |
| EcoRII | CCWGG | 1 cut(s) | 552 |
| FaeI | CATG | 4 cut(s) | 256, 342, 371, 479 |
| FaiI | YATR | 9 cut(s) | 254, 302, 340, 369, 383, 477, 626, 663, 726 |
| FatI | CATG | 4 cut(s) | 252, 338, 367, 475 |
| Fnu4HI | GCNGC | 1 cut(s) | 194 |
| FokI | GGATG | 1 cut(s) | 338 |
| Fsp4HI | GCNGC | 1 cut(s) | 194 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GluI | GCNGC | 1 cut(s) | 194 |
| GsuI | CTGGAG | 1 cut(s) | 575 |
| HaeIII | GGCC | 2 cut(s) | 105, 174 |
| Hin1II | CATG | 4 cut(s) | 256, 342, 371, 479 |
| HinfI | GANTC | 4 cut(s) | 91, 160, 249, 496 |
| Hpy166II | GTNNAC | 1 cut(s) | 491 |
| Hpy188I | TCNGA | 2 cut(s) | 404, 615 |
| Hpy188III | TCNNGA | 2 cut(s) | 355, 368 |
| Hpy8I | GTNNAC | 1 cut(s) | 491 |
| HpyAV | CCTTC | 2 cut(s) | 404, 696 |
| HpyCH4III | ACNGT | 1 cut(s) | 565 |
| HpyCH4V | TGCA | 4 cut(s) | 263, 449, 654, 698 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 66, 102, 171 |
| Hsp92II | CATG | 4 cut(s) | 256, 342, 371, 479 |
| Kzo9I | GATC | 2 cut(s) | 138, 241 |
| LmnI | GCTCC | 2 cut(s) | 130, 556 |
| LweI | GCATC | 1 cut(s) | 299 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeIII | GTNAC | 1 cut(s) | 256 |
| MalI | GATC | 2 cut(s) | 140, 243 |
| MboI | GATC | 2 cut(s) | 138, 241 |
| MboII | GAAGA | 4 cut(s) | 258, 356, 491, 618 |
| MfeI | CAATTG | 2 cut(s) | 655, 680 |
| MluCI | AATT | 7 cut(s) | 33, 205, 510, 655, 680, 718, 751 |
| MlyI | GAGTC | 1 cut(s) | 490 |
| MmeI | TCCRAC | 1 cut(s) | 524 |
| MnlI | CCTC | 8 cut(s) | 117, 186, 220, 313, 359, 529, 602, 638 |
| MroXI | GAANNNNTTC | 1 cut(s) | 483 |
| MspR9I | CCNGG | 1 cut(s) | 554 |
| MunI | CAATTG | 2 cut(s) | 655, 680 |
| MvaI | CCWGG | 1 cut(s) | 554 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 66, 102, 171 |
| NdeII | GATC | 2 cut(s) | 138, 241 |
| NlaIII | CATG | 4 cut(s) | 256, 342, 371, 479 |
| NspI | RCATGY | 1 cut(s) | 342 |
| PagI | TCATGA | 1 cut(s) | 367 |
| PciI | ACATGT | 1 cut(s) | 338 |
| PdmI | GAANNNNTTC | 1 cut(s) | 483 |
| PfeI | GAWTC | 3 cut(s) | 91, 160, 249 |
| PflFI | GACNNNGTC | 1 cut(s) | 10 |
| PfoI | TCCNGGA | 1 cut(s) | 552 |
| PkrI | GCNGC | 1 cut(s) | 195 |
| Ple19I | CGATCG | 1 cut(s) | 244 |
| PleI | GAGTC | 1 cut(s) | 490 |
| PpsI | GAGTC | 1 cut(s) | 490 |
| PscI | ACATGT | 1 cut(s) | 338 |
| PsiI | TTATAA | 2 cut(s) | 626, 663 |
| Psp6I | CCWGG | 1 cut(s) | 552 |
| PspGI | CCWGG | 1 cut(s) | 552 |
| PspPI | GGNCC | 2 cut(s) | 104, 173 |
| PsyI | GACNNNGTC | 1 cut(s) | 10 |
| PvuI | CGATCG | 1 cut(s) | 244 |
| RsaI | GTAC | 2 cut(s) | 334, 678 |
| RsaNI | GTAC | 2 cut(s) | 333, 677 |
| SatI | GCNGC | 1 cut(s) | 194 |
| Sau3AI | GATC | 2 cut(s) | 138, 241 |
| Sau96I | GGNCC | 2 cut(s) | 104, 173 |
| SchI | GAGTC | 1 cut(s) | 490 |
| ScrFI | CCNGG | 1 cut(s) | 554 |
| SetI | ASST | 4 cut(s) | 127, 351, 561, 613 |
| SfaNI | GCATC | 1 cut(s) | 299 |
| Sse9I | AATT | 7 cut(s) | 33, 205, 510, 655, 680, 718, 751 |
| SsiI | CCGC | 1 cut(s) | 194 |
| SspMI | CTAG | 1 cut(s) | 122 |
| StyD4I | CCNGG | 1 cut(s) | 552 |
| TaaI | ACNGT | 1 cut(s) | 565 |
| TaqI | TCGA | 6 cut(s) | 89, 137, 158, 244, 435, 643 |
| TasI | AATT | 7 cut(s) | 33, 205, 510, 655, 680, 718, 751 |
| TatI | WGTACW | 1 cut(s) | 676 |
| TauI | GCSGC | 1 cut(s) | 196 |
| TfiI | GAWTC | 3 cut(s) | 91, 160, 249 |
| TscAI | CASTG | 1 cut(s) | 451 |
| TspDTI | ATGAA | 4 cut(s) | 241, 291, 300, 492 |
| TspRI | CASTG | 1 cut(s) | 451 |
| Tth111I | GACNNNGTC | 1 cut(s) | 10 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 696 |
| XapI | RAATTY | 2 cut(s) | 205, 510 |
| XceI | RCATGY | 1 cut(s) | 342 |
| XmnI | GAANNNNTTC | 1 cut(s) | 483 |
| XspI | CTAG | 1 cut(s) | 122 |