DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 288 |
| AccB1I | GGYRCC | 1 cut(s) | 6 |
| AciI | CCGC | 1 cut(s) | 10 |
| AclWI | GGATC | 1 cut(s) | 416 |
| AcsI | RAATTY | 4 cut(s) | 45, 296, 525, 735 |
| AcuI | CTGAAG | 1 cut(s) | 312 |
| AcyI | GRCGYC | 1 cut(s) | 285 |
| AfaI | GTAC | 2 cut(s) | 397, 535 |
| AflIII | ACRYGT | 1 cut(s) | 635 |
| AgeI | ACCGGT | 1 cut(s) | 90 |
| AgsI | TTSAA | 3 cut(s) | 51, 133, 242 |
| AluBI | AGCT | 5 cut(s) | 24, 57, 354, 367, 709 |
| AluI | AGCT | 5 cut(s) | 24, 57, 354, 367, 709 |
| Alw26I | GTCTC | 2 cut(s) | 10, 276 |
| AlwI | GGATC | 1 cut(s) | 416 |
| AoxI | GGCC | 1 cut(s) | 492 |
| ApoI | RAATTY | 4 cut(s) | 45, 296, 525, 735 |
| AseI | ATTAAT | 1 cut(s) | 204 |
| AsiGI | ACCGGT | 1 cut(s) | 90 |
| AspS9I | GGNCC | 1 cut(s) | 493 |
| BanI | GGYRCC | 1 cut(s) | 6 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 435, 469 |
| BcoDI | GTCTC | 2 cut(s) | 10, 276 |
| BfaI | CTAG | 2 cut(s) | 374, 572 |
| BfmI | CTRYAG | 1 cut(s) | 101 |
| BglII | AGATCT | 1 cut(s) | 574 |
| BisI | GCNGC | 1 cut(s) | 10 |
| BlsI | GCNGC | 1 cut(s) | 11 |
| BmgT120I | GGNCC | 1 cut(s) | 493 |
| BmiI | GGNNCC | 2 cut(s) | 8, 495 |
| BmsI | GCATC | 1 cut(s) | 733 |
| BpmI | CTGGAG | 1 cut(s) | 487 |
| BsaAI | YACGTR | 1 cut(s) | 533 |
| BsaHI | GRCGYC | 1 cut(s) | 285 |
| BsaJI | CCNNGG | 1 cut(s) | 746 |
| BsaWI | WCCGGW | 1 cut(s) | 90 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 312, 342 |
| Bse118I | RCCGGY | 1 cut(s) | 90 |
| Bse1I | ACTGG | 1 cut(s) | 706 |
| BseDI | CCNNGG | 1 cut(s) | 746 |
| BseGI | GGATG | 2 cut(s) | 429, 724 |
| BseMII | CTCAG | 1 cut(s) | 34 |
| BseNI | ACTGG | 1 cut(s) | 706 |
| BshFI | GGCC | 1 cut(s) | 494 |
| BshNI | GGYRCC | 1 cut(s) | 6 |
| BshTI | ACCGGT | 1 cut(s) | 90 |
| BsiSI | CCGG | 1 cut(s) | 91 |
| BsmAI | GTCTC | 2 cut(s) | 10, 276 |
| BsmBI | CGTCTC | 1 cut(s) | 276 |
| BsnI | GGCC | 1 cut(s) | 494 |
| Bsp143I | GATC | 3 cut(s) | 421, 574, 711 |
| BspACI | CCGC | 1 cut(s) | 10 |
| BspANI | GGCC | 1 cut(s) | 494 |
| BspCNI | CTCAG | 1 cut(s) | 33 |
| BspLI | GGNNCC | 2 cut(s) | 8, 495 |
| BspPI | GGATC | 1 cut(s) | 416 |
| BspT107I | GGYRCC | 1 cut(s) | 6 |
| BsrFI | RCCGGY | 1 cut(s) | 90 |
| BsrI | ACTGG | 1 cut(s) | 706 |
| BssAI | RCCGGY | 1 cut(s) | 90 |
| BssECI | CCNNGG | 1 cut(s) | 746 |
| BssMI | GATC | 3 cut(s) | 421, 574, 711 |
| BssNI | GRCGYC | 1 cut(s) | 285 |
| BssT1I | CCWWGG | 1 cut(s) | 746 |
| Bst4CI | ACNGT | 3 cut(s) | 268, 395, 671 |
| BstACI | GRCGYC | 1 cut(s) | 285 |
| BstBAI | YACGTR | 1 cut(s) | 533 |
| BstDEI | CTNAG | 1 cut(s) | 20 |
| BstF5I | GGATG | 2 cut(s) | 429, 724 |
| BstKTI | GATC | 3 cut(s) | 424, 577, 714 |
| BstMAI | GTCTC | 2 cut(s) | 10, 276 |
| BstMBI | GATC | 3 cut(s) | 421, 574, 711 |
| BstSFI | CTRYAG | 1 cut(s) | 101 |
| BstSNI | TACGTA | 1 cut(s) | 533 |
| BstX2I | RGATCY | 1 cut(s) | 574 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 747 |
| BstYI | RGATCY | 1 cut(s) | 574 |
| BsuRI | GGCC | 1 cut(s) | 494 |
| BtsCI | GGATG | 2 cut(s) | 429, 724 |
| BtsI | GCAGTG | 2 cut(s) | 171, 320 |
| BtsIMutI | CAGTG | 4 cut(s) | 39, 171, 264, 320 |
| Cfr10I | RCCGGY | 1 cut(s) | 90 |
| Cfr13I | GGNCC | 1 cut(s) | 493 |
| Csp6I | GTAC | 2 cut(s) | 396, 534 |
| CspAI | ACCGGT | 1 cut(s) | 90 |
| CviAII | CATG | 1 cut(s) | 13 |
| CviJI | RGCY | 9 cut(s) | 24, 57, 193, 354, 367, 478, 494, 521, 709 |
| CviKI_1 | RGCY | 9 cut(s) | 24, 57, 193, 354, 367, 478, 494, 521, 709 |
| CviQI | GTAC | 2 cut(s) | 396, 534 |
| DdeI | CTNAG | 1 cut(s) | 20 |
| DpnI | GATC | 3 cut(s) | 423, 576, 713 |
| DpnII | GATC | 3 cut(s) | 421, 574, 711 |
| Eco105I | TACGTA | 1 cut(s) | 533 |
| Eco130I | CCWWGG | 1 cut(s) | 746 |
| Eco57I | CTGAAG | 1 cut(s) | 312 |
| EcoT14I | CCWWGG | 1 cut(s) | 746 |
| EcoT22I | ATGCAT | 2 cut(s) | 448, 687 |
| ErhI | CCWWGG | 1 cut(s) | 746 |
| Esp3I | CGTCTC | 1 cut(s) | 276 |
| FaeI | CATG | 1 cut(s) | 16 |
| FaiI | YATR | 9 cut(s) | 14, 28, 220, 233, 277, 448, 654, 663, 687 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 351, 383 |
| FatI | CATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 1 cut(s) | 10 |
| FokI | GGATG | 2 cut(s) | 416, 711 |
| Fsp4HI | GCNGC | 1 cut(s) | 10 |
| FspBI | CTAG | 2 cut(s) | 374, 572 |
| GluI | GCNGC | 1 cut(s) | 10 |
| GsuI | CTGGAG | 1 cut(s) | 487 |
| HaeIII | GGCC | 1 cut(s) | 494 |
| HapII | CCGG | 1 cut(s) | 91 |
| Hin1I | GRCGYC | 1 cut(s) | 285 |
| Hin1II | CATG | 1 cut(s) | 16 |
| HincII | GTYRAC | 1 cut(s) | 142 |
| HindII | GTYRAC | 1 cut(s) | 142 |
| HindIII | AAGCTT | 2 cut(s) | 352, 365 |
| HinfI | GANTC | 1 cut(s) | 18 |
| HpaII | CCGG | 1 cut(s) | 91 |
| Hpy166II | GTNNAC | 2 cut(s) | 142, 549 |
| Hpy188I | TCNGA | 1 cut(s) | 251 |
| Hpy188III | TCNNGA | 4 cut(s) | 374, 504, 572, 578 |
| Hpy8I | GTNNAC | 2 cut(s) | 142, 549 |
| Hpy99I | CGWCG | 1 cut(s) | 290 |
| HpyAV | CCTTC | 2 cut(s) | 246, 508 |
| HpyCH4III | ACNGT | 3 cut(s) | 268, 395, 671 |
| HpyCH4IV | ACGT | 4 cut(s) | 285, 532, 599, 637 |
| HpyCH4V | TGCA | 4 cut(s) | 176, 446, 464, 685 |
| HpyF3I | CTNAG | 1 cut(s) | 20 |
| HpySE526I | ACGT | 4 cut(s) | 285, 532, 599, 637 |
| Hsp92I | GRCGYC | 1 cut(s) | 285 |
| Hsp92II | CATG | 1 cut(s) | 16 |
| Kzo9I | GATC | 3 cut(s) | 421, 574, 711 |
| LpnPI | CCDG | 6 cut(s) | 89, 104, 447, 492, 517, 687 |
| LweI | GCATC | 1 cut(s) | 733 |
| MaeI | CTAG | 2 cut(s) | 374, 572 |
| MaeII | ACGT | 4 cut(s) | 285, 532, 599, 637 |
| MaeIII | GTNAC | 3 cut(s) | 268, 385, 470 |
| MalI | GATC | 3 cut(s) | 423, 576, 713 |
| MboI | GATC | 3 cut(s) | 421, 574, 711 |
| MboII | GAAGA | 2 cut(s) | 297, 305 |
| MfeI | CAATTG | 1 cut(s) | 552 |
| MflI | RGATCY | 1 cut(s) | 574 |
| MluCI | AATT | 7 cut(s) | 45, 296, 381, 466, 525, 552, 735 |
| MlyI | GAGTC | 1 cut(s) | 12 |
| MnlI | CCTC | 3 cut(s) | 93, 336, 511 |
| Mph1103I | ATGCAT | 2 cut(s) | 448, 687 |
| MseI | TTAA | 3 cut(s) | 204, 356, 441 |
| MslI | CAYNNNNRTG | 2 cut(s) | 223, 591 |
| MspA1I | CMGCKG | 1 cut(s) | 709 |
| MspI | CCGG | 1 cut(s) | 91 |
| MunI | CAATTG | 1 cut(s) | 552 |
| NdeII | GATC | 3 cut(s) | 421, 574, 711 |
| NlaIII | CATG | 1 cut(s) | 16 |
| NlaIV | GGNNCC | 2 cut(s) | 8, 495 |
| NmuCI | GTSAC | 1 cut(s) | 385 |
| NsiI | ATGCAT | 2 cut(s) | 448, 687 |
| PinAI | ACCGGT | 1 cut(s) | 90 |
| PkrI | GCNGC | 1 cut(s) | 11 |
| PleI | GAGTC | 1 cut(s) | 12 |
| PpsI | GAGTC | 1 cut(s) | 12 |
| Ppu21I | YACGTR | 1 cut(s) | 533 |
| PshBI | ATTAAT | 1 cut(s) | 204 |
| PspN4I | GGNNCC | 2 cut(s) | 8, 495 |
| PspPI | GGNCC | 1 cut(s) | 493 |
| PsuI | RGATCY | 1 cut(s) | 574 |
| PvuII | CAGCTG | 1 cut(s) | 709 |
| RsaI | GTAC | 2 cut(s) | 397, 535 |
| RsaNI | GTAC | 2 cut(s) | 396, 534 |
| RseI | CAYNNNNRTG | 2 cut(s) | 223, 591 |
| SaqAI | TTAA | 3 cut(s) | 204, 356, 441 |
| SatI | GCNGC | 1 cut(s) | 10 |
| Sau3AI | GATC | 3 cut(s) | 421, 574, 711 |
| Sau96I | GGNCC | 1 cut(s) | 493 |
| SchI | GAGTC | 1 cut(s) | 12 |
| SfaNI | GCATC | 1 cut(s) | 733 |
| SfcI | CTRYAG | 1 cut(s) | 101 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 223, 591 |
| SnaBI | TACGTA | 1 cut(s) | 533 |
| Sse9I | AATT | 7 cut(s) | 45, 296, 381, 466, 525, 552, 735 |
| SsiI | CCGC | 1 cut(s) | 10 |
| SspI | AATATT | 1 cut(s) | 489 |
| SspMI | CTAG | 2 cut(s) | 374, 572 |
| StyI | CCWWGG | 1 cut(s) | 746 |
| TaaI | ACNGT | 3 cut(s) | 268, 395, 671 |
| TaiI | ACGT | 4 cut(s) | 288, 535, 602, 640 |
| TaqI | TCGA | 1 cut(s) | 85 |
| TasI | AATT | 7 cut(s) | 45, 296, 381, 466, 525, 552, 735 |
| TatI | WGTACW | 1 cut(s) | 395 |
| TauI | GCSGC | 1 cut(s) | 12 |
| Tru1I | TTAA | 3 cut(s) | 204, 356, 441 |
| Tru9I | TTAA | 3 cut(s) | 204, 356, 441 |
| TscAI | CASTG | 4 cut(s) | 39, 178, 271, 327 |
| TseFI | GTSAC | 1 cut(s) | 385 |
| Tsp45I | GTSAC | 1 cut(s) | 385 |
| TspDTI | ATGAA | 2 cut(s) | 297, 573 |
| TspRI | CASTG | 4 cut(s) | 39, 178, 271, 327 |
| VspI | ATTAAT | 1 cut(s) | 204 |
| XapI | RAATTY | 4 cut(s) | 45, 296, 525, 735 |
| XbaI | TCTAGA | 2 cut(s) | 373, 571 |
| XspI | CTAG | 2 cut(s) | 374, 572 |
| ZraI | GACGTC | 1 cut(s) | 286 |
| Zsp2I | ATGCAT | 2 cut(s) | 448, 687 |