DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 470 |
| Acc36I | ACCTGC | 1 cut(s) | 470 |
| AcsI | RAATTY | 1 cut(s) | 422 |
| AcuI | CTGAAG | 1 cut(s) | 175 |
| AfaI | GTAC | 4 cut(s) | 451, 515, 574, 651 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 307 |
| AgsI | TTSAA | 4 cut(s) | 26, 115, 134, 202 |
| AjnI | CCWGG | 1 cut(s) | 487 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 657, 689 |
| AluBI | AGCT | 3 cut(s) | 268, 509, 603 |
| AluI | AGCT | 3 cut(s) | 268, 509, 603 |
| Alw21I | GWGCWC | 1 cut(s) | 147 |
| Alw26I | GTCTC | 1 cut(s) | 342 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 446 |
| ApeKI | GCWGC | 2 cut(s) | 506, 554 |
| ApoI | RAATTY | 1 cut(s) | 422 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 366 |
| AsuHPI | GGTGA | 4 cut(s) | 144, 316, 347, 689 |
| AxyI | CCTNAGG | 1 cut(s) | 302 |
| BbsI | GAAGAC | 1 cut(s) | 318 |
| Bbv12I | GWGCWC | 1 cut(s) | 147 |
| BbvCI | CCTCAGC | 1 cut(s) | 617 |
| BbvI | GCAGC | 2 cut(s) | 518, 541 |
| BciT130I | CCWGG | 1 cut(s) | 489 |
| BclI | TGATCA | 1 cut(s) | 91 |
| BcoDI | GTCTC | 1 cut(s) | 342 |
| BfaI | CTAG | 1 cut(s) | 730 |
| BfmI | CTRYAG | 1 cut(s) | 555 |
| BfuAI | ACCTGC | 1 cut(s) | 470 |
| BglII | AGATCT | 1 cut(s) | 33 |
| BisI | GCNGC | 2 cut(s) | 507, 555 |
| BlsI | GCNGC | 2 cut(s) | 508, 556 |
| Bme1390I | CCNGG | 1 cut(s) | 489 |
| BmrFI | CCNGG | 1 cut(s) | 489 |
| BmsI | GCATC | 3 cut(s) | 247, 452, 606 |
| BoxI | GACNNNNGTC | 1 cut(s) | 192 |
| BpiI | GAAGAC | 1 cut(s) | 318 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 134, 166 |
| Bpu10I | CCTNAGC | 1 cut(s) | 617 |
| BsaAI | YACGTR | 1 cut(s) | 139 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 139, 169 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 307 |
| Bse1I | ACTGG | 1 cut(s) | 386 |
| Bse21I | CCTNAGG | 1 cut(s) | 302 |
| BseBI | CCWGG | 1 cut(s) | 489 |
| BseGI | GGATG | 1 cut(s) | 631 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BseMII | CTCAG | 3 cut(s) | 293, 501, 631 |
| BseNI | ACTGG | 1 cut(s) | 386 |
| BseRI | GAGGAG | 2 cut(s) | 319, 605 |
| BseXI | GCAGC | 2 cut(s) | 518, 541 |
| BsiHKAI | GWGCWC | 1 cut(s) | 147 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BsmAI | GTCTC | 1 cut(s) | 342 |
| Bsp1286I | GDGCHC | 1 cut(s) | 147 |
| Bsp143I | GATC | 4 cut(s) | 33, 91, 645, 726 |
| BspCNI | CTCAG | 3 cut(s) | 294, 502, 630 |
| BspHI | TCATGA | 2 cut(s) | 94, 535 |
| BspMAI | CTGCAG | 1 cut(s) | 559 |
| BspMI | ACCTGC | 1 cut(s) | 470 |
| BsrI | ACTGG | 1 cut(s) | 386 |
| BssMI | GATC | 4 cut(s) | 33, 91, 645, 726 |
| Bst2UI | CCWGG | 1 cut(s) | 489 |
| Bst4CI | ACNGT | 2 cut(s) | 51, 673 |
| BstBAI | YACGTR | 1 cut(s) | 139 |
| BstDEI | CTNAG | 4 cut(s) | 302, 317, 510, 617 |
| BstF5I | GGATG | 1 cut(s) | 631 |
| BstKTI | GATC | 4 cut(s) | 36, 94, 648, 729 |
| BstMAI | GTCTC | 1 cut(s) | 342 |
| BstMBI | GATC | 4 cut(s) | 33, 91, 645, 726 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 235 |
| BstNI | CCWGG | 1 cut(s) | 489 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 192 |
| BstSCI | CCNGG | 1 cut(s) | 487 |
| BstSFI | CTRYAG | 1 cut(s) | 555 |
| BstV1I | GCAGC | 2 cut(s) | 518, 541 |
| BstV2I | GAAGAC | 1 cut(s) | 318 |
| BstX2I | RGATCY | 1 cut(s) | 33 |
| BstYI | RGATCY | 1 cut(s) | 33 |
| Bsu36I | CCTNAGG | 1 cut(s) | 302 |
| BtsCI | GGATG | 1 cut(s) | 631 |
| BtsIMutI | CAGTG | 1 cut(s) | 47 |
| BveI | ACCTGC | 1 cut(s) | 470 |
| CaiI | CAGNNNCTG | 1 cut(s) | 446 |
| CciI | TCATGA | 2 cut(s) | 94, 535 |
| Csp6I | GTAC | 4 cut(s) | 450, 514, 573, 650 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 112, 147 |
| CviAII | CATG | 6 cut(s) | 95, 212, 248, 292, 536, 551 |
| CviJI | RGCY | 3 cut(s) | 268, 509, 603 |
| CviKI_1 | RGCY | 3 cut(s) | 268, 509, 603 |
| CviQI | GTAC | 4 cut(s) | 450, 514, 573, 650 |
| DdeI | CTNAG | 4 cut(s) | 302, 317, 510, 617 |
| DpnI | GATC | 4 cut(s) | 35, 93, 647, 728 |
| DpnII | GATC | 4 cut(s) | 33, 91, 645, 726 |
| Eco57I | CTGAAG | 1 cut(s) | 175 |
| Eco81I | CCTNAGG | 1 cut(s) | 302 |
| EcoRII | CCWGG | 1 cut(s) | 487 |
| EcoT22I | ATGCAT | 1 cut(s) | 175 |
| FaeI | CATG | 6 cut(s) | 98, 215, 251, 295, 539, 554 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 213, 245 |
| FatI | CATG | 6 cut(s) | 94, 211, 247, 291, 535, 550 |
| FbaI | TGATCA | 1 cut(s) | 91 |
| Fnu4HI | GCNGC | 2 cut(s) | 507, 555 |
| FokI | GGATG | 1 cut(s) | 618 |
| Fsp4HI | GCNGC | 2 cut(s) | 507, 555 |
| FspBI | CTAG | 1 cut(s) | 730 |
| GluI | GCNGC | 2 cut(s) | 507, 555 |
| Hin1II | CATG | 6 cut(s) | 98, 215, 251, 295, 539, 554 |
| HinfI | GANTC | 5 cut(s) | 119, 272, 321, 414, 484 |
| HphI | GGTGA | 4 cut(s) | 144, 316, 347, 689 |
| Hpy166II | GTNNAC | 1 cut(s) | 575 |
| Hpy188III | TCNNGA | 6 cut(s) | 95, 164, 185, 207, 418, 536 |
| Hpy8I | GTNNAC | 1 cut(s) | 575 |
| HpyAV | CCTTC | 1 cut(s) | 32 |
| HpyCH4III | ACNGT | 2 cut(s) | 51, 673 |
| HpyCH4IV | ACGT | 1 cut(s) | 138 |
| HpyCH4V | TGCA | 3 cut(s) | 173, 465, 557 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 235 |
| HpyF3I | CTNAG | 4 cut(s) | 302, 317, 510, 617 |
| HpySE526I | ACGT | 1 cut(s) | 138 |
| Hsp92II | CATG | 6 cut(s) | 98, 215, 251, 295, 539, 554 |
| Ksp22I | TGATCA | 1 cut(s) | 91 |
| Kzo9I | GATC | 4 cut(s) | 33, 91, 645, 726 |
| LmnI | GCTCC | 2 cut(s) | 142, 491 |
| Lsp1109I | GCAGC | 2 cut(s) | 518, 541 |
| LweI | GCATC | 3 cut(s) | 247, 452, 606 |
| MaeI | CTAG | 1 cut(s) | 730 |
| MaeII | ACGT | 1 cut(s) | 138 |
| MaeIII | GTNAC | 2 cut(s) | 14, 559 |
| MalI | GATC | 4 cut(s) | 35, 93, 647, 728 |
| MboI | GATC | 4 cut(s) | 33, 91, 645, 726 |
| MboII | GAAGA | 4 cut(s) | 173, 323, 509, 620 |
| MfeI | CAATTG | 1 cut(s) | 587 |
| MflI | RGATCY | 1 cut(s) | 33 |
| MhlI | GDGCHC | 1 cut(s) | 147 |
| MluCI | AATT | 5 cut(s) | 159, 197, 422, 531, 587 |
| MnlI | CCTC | 7 cut(s) | 160, 165, 277, 297, 300, 338, 626 |
| Mph1103I | ATGCAT | 1 cut(s) | 175 |
| MroXI | GAANNNNTTC | 1 cut(s) | 366 |
| MseI | TTAA | 7 cut(s) | 6, 177, 401, 410, 473, 699, 705 |
| MspA1I | CMGCKG | 2 cut(s) | 509, 603 |
| MspR9I | CCNGG | 1 cut(s) | 489 |
| MunI | CAATTG | 1 cut(s) | 587 |
| MvaI | CCWGG | 1 cut(s) | 489 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 235 |
| NdeII | GATC | 4 cut(s) | 33, 91, 645, 726 |
| NlaIII | CATG | 6 cut(s) | 98, 215, 251, 295, 539, 554 |
| NmuCI | GTSAC | 1 cut(s) | 14 |
| NsiI | ATGCAT | 1 cut(s) | 175 |
| PagI | TCATGA | 2 cut(s) | 94, 535 |
| PaqCI | CACCTGC | 1 cut(s) | 470 |
| PdmI | GAANNNNTTC | 1 cut(s) | 366 |
| PfeI | GAWTC | 5 cut(s) | 119, 272, 321, 414, 484 |
| PfoI | TCCNGGA | 1 cut(s) | 487 |
| PkrI | GCNGC | 2 cut(s) | 508, 556 |
| Ppu21I | YACGTR | 1 cut(s) | 139 |
| PshAI | GACNNNNGTC | 1 cut(s) | 192 |
| Psp6I | CCWGG | 1 cut(s) | 487 |
| PspGI | CCWGG | 1 cut(s) | 487 |
| PstI | CTGCAG | 1 cut(s) | 559 |
| PstNI | CAGNNNCTG | 1 cut(s) | 446 |
| PsuI | RGATCY | 1 cut(s) | 33 |
| PvuII | CAGCTG | 2 cut(s) | 509, 603 |
| RsaI | GTAC | 4 cut(s) | 451, 515, 574, 651 |
| RsaNI | GTAC | 4 cut(s) | 450, 514, 573, 650 |
| SaqAI | TTAA | 7 cut(s) | 6, 177, 401, 410, 473, 699, 705 |
| SatI | GCNGC | 2 cut(s) | 507, 555 |
| Sau3AI | GATC | 4 cut(s) | 33, 91, 645, 726 |
| ScrFI | CCNGG | 1 cut(s) | 489 |
| SduI | GDGCHC | 1 cut(s) | 147 |
| SfaNI | GCATC | 3 cut(s) | 247, 452, 606 |
| SfcI | CTRYAG | 1 cut(s) | 555 |
| Sse9I | AATT | 5 cut(s) | 159, 197, 422, 531, 587 |
| SspMI | CTAG | 1 cut(s) | 730 |
| StyD4I | CCNGG | 1 cut(s) | 487 |
| TaaI | ACNGT | 2 cut(s) | 51, 673 |
| TaiI | ACGT | 1 cut(s) | 141 |
| TaqI | TCGA | 1 cut(s) | 102 |
| TasI | AATT | 5 cut(s) | 159, 197, 422, 531, 587 |
| TatI | WGTACW | 1 cut(s) | 513 |
| TfiI | GAWTC | 5 cut(s) | 119, 272, 321, 414, 484 |
| Tru1I | TTAA | 7 cut(s) | 6, 177, 401, 410, 473, 699, 705 |
| Tru9I | TTAA | 7 cut(s) | 6, 177, 401, 410, 473, 699, 705 |
| TscAI | CASTG | 1 cut(s) | 54 |
| TseFI | GTSAC | 1 cut(s) | 14 |
| TseI | GCWGC | 2 cut(s) | 506, 554 |
| Tsp45I | GTSAC | 1 cut(s) | 14 |
| TspDTI | ATGAA | 6 cut(s) | 111, 132, 228, 273, 524, 732 |
| TspRI | CASTG | 1 cut(s) | 54 |
| XapI | RAATTY | 1 cut(s) | 422 |
| XmnI | GAANNNNTTC | 1 cut(s) | 366 |
| XspI | CTAG | 1 cut(s) | 730 |
| Zsp2I | ATGCAT | 1 cut(s) | 175 |