DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1316 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 983 |
| Acc36I | ACCTGC | 1 cut(s) | 1316 |
| AccB1I | GGYRCC | 1 cut(s) | 1341 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1249 |
| AccI | GTMKAC | 3 cut(s) | 507, 1992, 2075 |
| AccII | CGCG | 5 cut(s) | 253, 377, 617, 845, 1234 |
| AccIII | TCCGGA | 1 cut(s) | 143 |
| AclI | AACGTT | 1 cut(s) | 1590 |
| AclWI | GGATC | 3 cut(s) | 1895, 2046, 2220 |
| AcoI | YGGCCR | 3 cut(s) | 591, 1269, 1552 |
| AcsI | RAATTY | 2 cut(s) | 1004, 2161 |
| AcvI | CACGTG | 3 cut(s) | 476, 496, 597 |
| AcyI | GRCGYC | 2 cut(s) | 1023, 1342 |
| AfaI | GTAC | 3 cut(s) | 887, 1097, 1154 |
| AflIII | ACRYGT | 1 cut(s) | 475 |
| AgeI | ACCGGT | 1 cut(s) | 542 |
| AgsI | TTSAA | 4 cut(s) | 311, 625, 1159, 1729 |
| AjiI | CACGTC | 1 cut(s) | 1642 |
| AjnI | CCWGG | 3 cut(s) | 663, 906, 1025 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 185, 217, 1173, 1205 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 605, 637, 1442, 1474 |
| Alw21I | GWGCWC | 2 cut(s) | 188, 798 |
| Alw26I | GTCTC | 6 cut(s) | 135, 1050, 1056, 1552, 1568, 2201 |
| Alw44I | GTGCAC | 1 cut(s) | 184 |
| AlwI | GGATC | 3 cut(s) | 1895, 2046, 2220 |
| Ama87I | CYCGRG | 2 cut(s) | 1047, 1830 |
| Aor13HI | TCCGGA | 1 cut(s) | 143 |
| AoxI | GGCC | 8 cut(s) | 459, 591, 600, 773, 1050, 1269, 1388, 1552 |
| ApaI | GGGCCC | 1 cut(s) | 604 |
| ApaLI | GTGCAC | 1 cut(s) | 184 |
| ApeKI | GCWGC | 7 cut(s) | 1418, 1877, 2234, 2237, 2240, 2243, 2246 |
| ApoI | RAATTY | 2 cut(s) | 1004, 2161 |
| AsiGI | ACCGGT | 1 cut(s) | 542 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 200, 1721 |
| AspLEI | GCGC | 5 cut(s) | 104, 255, 379, 845, 1344 |
| AsuC2I | CCSGG | 1 cut(s) | 1866 |
| AsuHPI | GGTGA | 9 cut(s) | 520, 769, 922, 1048, 1190, 1340, 1525, 1701, 2018 |
| AsuNHI | GCTAGC | 2 cut(s) | 1880, 2138 |
| AvaI | CYCGRG | 2 cut(s) | 1047, 1830 |
| AvaII | GGWCC | 7 cut(s) | 146, 151, 545, 661, 953, 1057, 1135 |
| BaeGI | GKGCMC | 2 cut(s) | 188, 604 |
| BalI | TGGCCA | 1 cut(s) | 1554 |
| BanI | GGYRCC | 1 cut(s) | 1341 |
| BanII | GRGCYC | 1 cut(s) | 604 |
| BbrPI | CACGTG | 3 cut(s) | 476, 496, 597 |
| BbsI | GAAGAC | 1 cut(s) | 2115 |
| Bbv12I | GWGCWC | 2 cut(s) | 188, 798 |
| BbvI | GCAGC | 7 cut(s) | 1430, 1864, 2221, 2224, 2227, 2230, 2233 |
| BccI | CCATC | 7 cut(s) | 52, 341, 395, 684, 1247, 1463, 1504 |
| BceAI | ACGGC | 2 cut(s) | 606, 1663 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 619, 653, 1304, 1338, 2216, 2250 |
| BciT130I | CCWGG | 3 cut(s) | 665, 908, 1027 |
| BciVI | GTATCC | 1 cut(s) | 745 |
| BclI | TGATCA | 3 cut(s) | 912, 1609, 1809 |
| BcnI | CCSGG | 1 cut(s) | 1866 |
| BcoDI | GTCTC | 6 cut(s) | 135, 1050, 1056, 1552, 1568, 2201 |
| BfaI | CTAG | 6 cut(s) | 293, 1701, 1737, 1881, 2018, 2139 |
| BfmI | CTRYAG | 2 cut(s) | 880, 2127 |
| BfoI | RGCGCY | 1 cut(s) | 1345 |
| BfuAI | ACCTGC | 1 cut(s) | 1316 |
| BfuI | GTATCC | 1 cut(s) | 745 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 599, 608 |
| Bme1390I | CCNGG | 4 cut(s) | 665, 908, 1027, 1866 |
| Bme18I | GGWCC | 7 cut(s) | 146, 151, 545, 661, 953, 1057, 1135 |
| BmeT110I | CYCGRG | 2 cut(s) | 1047, 1830 |
| BmgBI | CACGTC | 1 cut(s) | 1642 |
| BmiI | GGNNCC | 9 cut(s) | 402, 547, 602, 603, 954, 1137, 1343, 1841, 1863 |
| BmrFI | CCNGG | 4 cut(s) | 665, 908, 1027, 1866 |
| BmrI | ACTGGG | 1 cut(s) | 1462 |
| BmsI | GCATC | 5 cut(s) | 544, 1135, 1162, 1430, 1753 |
| BmtI | GCTAGC | 2 cut(s) | 1884, 2142 |
| BmuI | ACTGGG | 1 cut(s) | 1462 |
| BpiI | GAAGAC | 1 cut(s) | 2115 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1679, 1711 |
| BpmI | CTGGAG | 2 cut(s) | 416, 596 |
| BpuMI | CCSGG | 1 cut(s) | 1866 |
| BsaAI | YACGTR | 3 cut(s) | 476, 496, 597 |
| BsaHI | GRCGYC | 2 cut(s) | 1023, 1342 |
| BsaI | GGTCTC | 2 cut(s) | 135, 1056 |
| BsaJI | CCNNGG | 7 cut(s) | 452, 588, 948, 1026, 1053, 1712, 2002 |
| BsaWI | WCCGGW | 5 cut(s) | 143, 148, 542, 554, 1073 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 99, 129, 138, 168, 254, 284 |
| Bse118I | RCCGGY | 1 cut(s) | 542 |
| Bse1I | ACTGG | 1 cut(s) | 1457 |
| BseAI | TCCGGA | 1 cut(s) | 143 |
| BseBI | CCWGG | 3 cut(s) | 665, 908, 1027 |
| BseDI | CCNNGG | 7 cut(s) | 452, 588, 948, 1026, 1053, 1712, 2002 |
| BseGI | GGATG | 6 cut(s) | 695, 979, 1093, 1177, 1258, 1768 |
| BseMII | CTCAG | 2 cut(s) | 908, 1510 |
| BseNI | ACTGG | 1 cut(s) | 1457 |
| BseRI | GAGGAG | 6 cut(s) | 107, 146, 331, 413, 722, 1896 |
| BseSI | GKGCMC | 2 cut(s) | 188, 604 |
| BseX3I | CGGCCG | 1 cut(s) | 1269 |
| BseXI | GCAGC | 7 cut(s) | 1430, 1864, 2221, 2224, 2227, 2230, 2233 |
| BseYI | CCCAGC | 1 cut(s) | 685 |
| BsgI | GTGCAG | 2 cut(s) | 148, 752 |
| Bsh1236I | CGCG | 5 cut(s) | 253, 377, 617, 845, 1234 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1272, 1295 |
| BshFI | GGCC | 8 cut(s) | 461, 593, 602, 775, 1052, 1271, 1390, 1554 |
| BshNI | GGYRCC | 1 cut(s) | 1341 |
| BshTI | ACCGGT | 1 cut(s) | 542 |
| BsiEI | CGRYCG | 2 cut(s) | 1272, 1295 |
| BsiHKAI | GWGCWC | 2 cut(s) | 188, 798 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1047, 1830 |
| BsiSI | CCGG | 8 cut(s) | 105, 144, 149, 404, 543, 555, 1074, 1866 |
| BslFI | GGGAC | 3 cut(s) | 531, 1341, 1885 |
| BsmAI | GTCTC | 6 cut(s) | 135, 1050, 1056, 1552, 1568, 2201 |
| BsmBI | CGTCTC | 1 cut(s) | 2201 |
| BsmFI | GGGAC | 3 cut(s) | 531, 1341, 1885 |
| BsnI | GGCC | 8 cut(s) | 461, 593, 602, 775, 1052, 1271, 1390, 1554 |
| Bso31I | GGTCTC | 2 cut(s) | 135, 1056 |
| BsoBI | CYCGRG | 2 cut(s) | 1047, 1830 |
| Bsp120I | GGGCCC | 1 cut(s) | 600 |
| Bsp1286I | GDGCHC | 3 cut(s) | 188, 604, 798 |
| Bsp13I | TCCGGA | 1 cut(s) | 143 |
| Bsp1407I | TGTACA | 1 cut(s) | 1095 |
| BspANI | GGCC | 8 cut(s) | 461, 593, 602, 775, 1052, 1271, 1390, 1554 |
| BspCNI | CTCAG | 2 cut(s) | 907, 1509 |
| BspEI | TCCGGA | 1 cut(s) | 143 |
| BspFNI | CGCG | 5 cut(s) | 253, 377, 617, 845, 1234 |
| BspHI | TCATGA | 1 cut(s) | 1606 |
| BspLI | GGNNCC | 9 cut(s) | 402, 547, 602, 603, 954, 1137, 1343, 1841, 1863 |
| BspMI | ACCTGC | 1 cut(s) | 1316 |
| BspOI | GCTAGC | 2 cut(s) | 1884, 2142 |
| BspPI | GGATC | 3 cut(s) | 1895, 2046, 2220 |
| BspT107I | GGYRCC | 1 cut(s) | 1341 |
| BspTNI | GGTCTC | 2 cut(s) | 135, 1056 |
| BsrFI | RCCGGY | 1 cut(s) | 542 |
| BsrGI | TGTACA | 1 cut(s) | 1095 |
| BsrI | ACTGG | 1 cut(s) | 1457 |
| BssAI | RCCGGY | 1 cut(s) | 542 |
| BssECI | CCNNGG | 7 cut(s) | 452, 588, 948, 1026, 1053, 1712, 2002 |
| BssNAI | GTATAC | 1 cut(s) | 2076 |
| BssNI | GRCGYC | 2 cut(s) | 1023, 1342 |
| BssT1I | CCWWGG | 4 cut(s) | 948, 1053, 1712, 2002 |
| Bst1107I | GTATAC | 1 cut(s) | 2076 |
| Bst2UI | CCWGG | 3 cut(s) | 665, 908, 1027 |
| Bst4CI | ACNGT | 9 cut(s) | 29, 46, 307, 505, 532, 757, 793, 967, 2131 |
| Bst6I | CTCTTC | 1 cut(s) | 125 |
| BstACI | GRCGYC | 2 cut(s) | 1023, 1342 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1204, 1427 |
| BstAUI | TGTACA | 1 cut(s) | 1095 |
| BstBAI | YACGTR | 3 cut(s) | 476, 496, 597 |
| BstDEI | CTNAG | 3 cut(s) | 894, 1496, 2250 |
| BstDSI | CCRYGG | 1 cut(s) | 588 |
| BstEII | GGTNACC | 2 cut(s) | 526, 1945 |
| BstF5I | GGATG | 6 cut(s) | 695, 979, 1093, 1177, 1258, 1768 |
| BstFNI | CGCG | 5 cut(s) | 253, 377, 617, 845, 1234 |
| BstH2I | RGCGCY | 1 cut(s) | 1345 |
| BstHHI | GCGC | 5 cut(s) | 104, 255, 379, 845, 1344 |
| BstMAI | GTCTC | 6 cut(s) | 135, 1050, 1056, 1552, 1568, 2201 |
| BstMCI | CGRYCG | 2 cut(s) | 1272, 1295 |
| BstNI | CCWGG | 3 cut(s) | 665, 908, 1027 |
| BstPI | GGTNACC | 2 cut(s) | 526, 1945 |
| BstSCI | CCNGG | 4 cut(s) | 663, 906, 1025, 1864 |
| BstSFI | CTRYAG | 2 cut(s) | 880, 2127 |
| BstSLI | GKGCMC | 2 cut(s) | 188, 604 |
| BstUI | CGCG | 5 cut(s) | 253, 377, 617, 845, 1234 |
| BstV1I | GCAGC | 7 cut(s) | 1430, 1864, 2221, 2224, 2227, 2230, 2233 |
| BstV2I | GAAGAC | 1 cut(s) | 2115 |
| BstX2I | RGATCY | 1 cut(s) | 2212 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 394, 1469, 1550 |
| BstYI | RGATCY | 1 cut(s) | 2212 |
| BstZ17I | GTATAC | 1 cut(s) | 2076 |
| BstZI | CGGCCG | 1 cut(s) | 1269 |
| BsuI | GTATCC | 1 cut(s) | 745 |
| BsuRI | GGCC | 8 cut(s) | 461, 593, 602, 775, 1052, 1271, 1390, 1554 |
| BtgI | CCRYGG | 1 cut(s) | 588 |
| BtrI | CACGTC | 1 cut(s) | 1642 |
| BtsCI | GGATG | 6 cut(s) | 695, 979, 1093, 1177, 1258, 1768 |
| BtsI | GCAGTG | 2 cut(s) | 740, 1976 |
| BtsIMutI | CAGTG | 5 cut(s) | 51, 740, 1504, 1976, 2136 |
| BveI | ACCTGC | 1 cut(s) | 1316 |
| CciI | TCATGA | 1 cut(s) | 1606 |
| CfoI | GCGC | 5 cut(s) | 104, 255, 379, 845, 1344 |
| Cfr10I | RCCGGY | 1 cut(s) | 542 |
| CpoI | CGGWCCG | 1 cut(s) | 146 |
| CseI | GACGC | 3 cut(s) | 580, 623, 1031 |
| CsiI | ACCWGGT | 1 cut(s) | 906 |
| Csp6I | GTAC | 3 cut(s) | 886, 1096, 1153 |
| CspAI | ACCGGT | 1 cut(s) | 542 |
| CspI | CGGWCCG | 1 cut(s) | 146 |
| CviQI | GTAC | 3 cut(s) | 886, 1096, 1153 |
| DdeI | CTNAG | 3 cut(s) | 894, 1496, 2250 |
| DinI | GGCGCC | 1 cut(s) | 1343 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 983 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 983 |
| EaeI | YGGCCR | 3 cut(s) | 591, 1269, 1552 |
| EagI | CGGCCG | 1 cut(s) | 1269 |
| Eam1104I | CTCTTC | 1 cut(s) | 125 |
| EarI | CTCTTC | 1 cut(s) | 125 |
| EciI | GGCGGA | 3 cut(s) | 68, 626, 2184 |
| EclXI | CGGCCG | 1 cut(s) | 1269 |
| Eco130I | CCWWGG | 4 cut(s) | 948, 1053, 1712, 2002 |
| Eco147I | AGGCCT | 1 cut(s) | 461 |
| Eco24I | GRGCYC | 1 cut(s) | 604 |
| Eco31I | GGTCTC | 2 cut(s) | 135, 1056 |
| Eco32I | GATATC | 1 cut(s) | 1333 |
| Eco47I | GGWCC | 7 cut(s) | 146, 151, 545, 661, 953, 1057, 1135 |
| Eco52I | CGGCCG | 1 cut(s) | 1269 |
| Eco72I | CACGTG | 3 cut(s) | 476, 496, 597 |
| Eco88I | CYCGRG | 2 cut(s) | 1047, 1830 |
| Eco91I | GGTNACC | 2 cut(s) | 526, 1945 |
| EcoO109I | RGGNCCY | 1 cut(s) | 601 |
| EcoO65I | GGTNACC | 2 cut(s) | 526, 1945 |
| EcoRII | CCWGG | 3 cut(s) | 663, 906, 1025 |
| EcoRV | GATATC | 1 cut(s) | 1333 |
| EcoT14I | CCWWGG | 4 cut(s) | 948, 1053, 1712, 2002 |
| EcoT38I | GRGCYC | 1 cut(s) | 604 |
| EgeI | GGCGCC | 1 cut(s) | 1343 |
| EheI | GGCGCC | 1 cut(s) | 1343 |
| ErhI | CCWWGG | 4 cut(s) | 948, 1053, 1712, 2002 |
| Esp3I | CGTCTC | 1 cut(s) | 2201 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 185, 217 |
| FaqI | GGGAC | 3 cut(s) | 531, 1341, 1885 |
| FauI | CCCGC | 8 cut(s) | 297, 450, 612, 1024, 1168, 1239, 1969, 1973 |
| FbaI | TGATCA | 3 cut(s) | 912, 1609, 1809 |
| FblI | GTMKAC | 3 cut(s) | 507, 1992, 2075 |
| FokI | GGATG | 6 cut(s) | 702, 986, 1100, 1184, 1265, 1775 |
| FriOI | GRGCYC | 1 cut(s) | 604 |
| FspBI | CTAG | 6 cut(s) | 293, 1701, 1737, 1881, 2018, 2139 |
| GlaI | GCGC | 5 cut(s) | 103, 254, 378, 844, 1343 |
| GsaI | CCCAGC | 1 cut(s) | 689 |
| GsuI | CTGGAG | 2 cut(s) | 416, 596 |
| HaeII | RGCGCY | 1 cut(s) | 1345 |
| HaeIII | GGCC | 8 cut(s) | 461, 593, 602, 775, 1052, 1271, 1390, 1554 |
| HapII | CCGG | 8 cut(s) | 105, 144, 149, 404, 543, 555, 1074, 1866 |
| HgaI | GACGC | 3 cut(s) | 580, 623, 1031 |
| HhaI | GCGC | 5 cut(s) | 104, 255, 379, 845, 1344 |
| Hin1I | GRCGYC | 2 cut(s) | 1023, 1342 |
| Hin6I | GCGC | 5 cut(s) | 102, 253, 377, 843, 1342 |
| HinP1I | GCGC | 5 cut(s) | 102, 253, 377, 843, 1342 |
| HincII | GTYRAC | 2 cut(s) | 508, 789 |
| HindII | GTYRAC | 2 cut(s) | 508, 789 |
| HindIII | AAGCTT | 1 cut(s) | 1720 |
| HinfI | GANTC | 7 cut(s) | 108, 488, 1354, 1494, 1675, 1706, 2191 |
| HpaII | CCGG | 8 cut(s) | 105, 144, 149, 404, 543, 555, 1074, 1866 |
| HphI | GGTGA | 9 cut(s) | 520, 769, 922, 1048, 1190, 1340, 1525, 1701, 2018 |
| Hpy99I | CGWCG | 6 cut(s) | 470, 509, 622, 1025, 1277, 1822 |
| HpyAV | CCTTC | 5 cut(s) | 150, 451, 742, 776, 1753 |
| HpyCH4III | ACNGT | 9 cut(s) | 29, 46, 307, 505, 532, 757, 793, 967, 2131 |
| HpyCH4IV | ACGT | 8 cut(s) | 475, 495, 596, 620, 1400, 1536, 1590, 1641 |
| HpyCH4V | TGCA | 9 cut(s) | 165, 179, 186, 535, 733, 1198, 1308, 1325, 1766 |
| HpyF3I | CTNAG | 3 cut(s) | 894, 1496, 2250 |
| HpySE526I | ACGT | 8 cut(s) | 475, 495, 596, 620, 1400, 1536, 1590, 1641 |
| Hsp92I | GRCGYC | 2 cut(s) | 1023, 1342 |
| HspAI | GCGC | 5 cut(s) | 102, 253, 377, 843, 1342 |
| KasI | GGCGCC | 1 cut(s) | 1341 |
| Kpn2I | TCCGGA | 1 cut(s) | 143 |
| Ksp22I | TGATCA | 3 cut(s) | 912, 1609, 1809 |
| LmnI | GCTCC | 3 cut(s) | 384, 400, 801 |
| Lsp1109I | GCAGC | 7 cut(s) | 1430, 1864, 2221, 2224, 2227, 2230, 2233 |
| LweI | GCATC | 5 cut(s) | 544, 1135, 1162, 1430, 1753 |
| MabI | ACCWGGT | 1 cut(s) | 906 |
| MaeI | CTAG | 6 cut(s) | 293, 1701, 1737, 1881, 2018, 2139 |
| MaeII | ACGT | 8 cut(s) | 475, 495, 596, 620, 1400, 1536, 1590, 1641 |
| MaeIII | GTNAC | 6 cut(s) | 46, 526, 1235, 1396, 1707, 1945 |
| MboII | GAAGA | 5 cut(s) | 67, 112, 346, 2021, 2120 |
| MflI | RGATCY | 1 cut(s) | 2212 |
| MhlI | GDGCHC | 3 cut(s) | 188, 604, 798 |
| MlsI | TGGCCA | 1 cut(s) | 1554 |
| MluCI | AATT | 7 cut(s) | 997, 1004, 1079, 1482, 1657, 2046, 2161 |
| MluNI | TGGCCA | 1 cut(s) | 1554 |
| Mly113I | GGCGCC | 1 cut(s) | 1342 |
| MlyI | GAGTC | 6 cut(s) | 102, 497, 1363, 1488, 1715, 2185 |
| MmeI | TCCRAC | 2 cut(s) | 297, 1471 |
| Mox20I | TGGCCA | 1 cut(s) | 1554 |
| MroI | TCCGGA | 1 cut(s) | 143 |
| MroXI | GAANNNNTTC | 2 cut(s) | 200, 1721 |
| MscI | TGGCCA | 1 cut(s) | 1554 |
| MseI | TTAA | 5 cut(s) | 53, 726, 1221, 1485, 1773 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1508 |
| Msp20I | TGGCCA | 1 cut(s) | 1554 |
| MspA1I | CMGCKG | 3 cut(s) | 368, 445, 607 |
| MspI | CCGG | 8 cut(s) | 105, 144, 149, 404, 543, 555, 1074, 1866 |
| MspR9I | CCNGG | 4 cut(s) | 665, 908, 1027, 1866 |
| MvaI | CCWGG | 3 cut(s) | 665, 908, 1027 |
| MvnI | CGCG | 5 cut(s) | 253, 377, 617, 845, 1234 |
| NarI | GGCGCC | 1 cut(s) | 1342 |
| NciI | CCSGG | 1 cut(s) | 1866 |
| NheI | GCTAGC | 2 cut(s) | 1880, 2138 |
| NlaIV | GGNNCC | 9 cut(s) | 402, 547, 602, 603, 954, 1137, 1343, 1841, 1863 |
| NmeAIII | GCCGAG | 1 cut(s) | 869 |
| NmuCI | GTSAC | 4 cut(s) | 46, 526, 1396, 1707 |
| PagI | TCATGA | 1 cut(s) | 1606 |
| PaqCI | CACCTGC | 1 cut(s) | 1316 |
| PceI | AGGCCT | 1 cut(s) | 461 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 501 |
| PdmI | GAANNNNTTC | 2 cut(s) | 200, 1721 |
| PfeI | GAWTC | 1 cut(s) | 1675 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1249 |
| PinAI | ACCGGT | 1 cut(s) | 542 |
| Ple19I | CGATCG | 1 cut(s) | 1295 |
| PleI | GAGTC | 6 cut(s) | 102, 496, 1362, 1488, 1714, 2185 |
| PluTI | GGCGCC | 1 cut(s) | 1345 |
| PmaCI | CACGTG | 3 cut(s) | 476, 496, 597 |
| PmlI | CACGTG | 3 cut(s) | 476, 496, 597 |
| PpsI | GAGTC | 6 cut(s) | 102, 496, 1362, 1488, 1714, 2185 |
| Ppu21I | YACGTR | 3 cut(s) | 476, 496, 597 |
| Psp1406I | AACGTT | 1 cut(s) | 1590 |
| Psp6I | CCWGG | 3 cut(s) | 663, 906, 1025 |
| PspCI | CACGTG | 3 cut(s) | 476, 496, 597 |
| PspEI | GGTNACC | 2 cut(s) | 526, 1945 |
| PspFI | CCCAGC | 1 cut(s) | 685 |
| PspGI | CCWGG | 3 cut(s) | 663, 906, 1025 |
| PspN4I | GGNNCC | 9 cut(s) | 402, 547, 602, 603, 954, 1137, 1343, 1841, 1863 |
| PspOMI | GGGCCC | 1 cut(s) | 600 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1088, 1120 |
| PsuI | RGATCY | 1 cut(s) | 2212 |
| PvuI | CGATCG | 1 cut(s) | 1295 |
| RsaI | GTAC | 3 cut(s) | 887, 1097, 1154 |
| RsaNI | GTAC | 3 cut(s) | 886, 1096, 1153 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1508 |
| Rsr2I | CGGWCCG | 1 cut(s) | 146 |
| RsrII | CGGWCCG | 1 cut(s) | 146 |
| SalI | GTCGAC | 1 cut(s) | 506 |
| SaqAI | TTAA | 5 cut(s) | 53, 726, 1221, 1485, 1773 |
| SchI | GAGTC | 6 cut(s) | 102, 497, 1363, 1488, 1715, 2185 |
| ScrFI | CCNGG | 4 cut(s) | 665, 908, 1027, 1866 |
| SduI | GDGCHC | 3 cut(s) | 188, 604, 798 |
| SexAI | ACCWGGT | 1 cut(s) | 906 |
| SfaNI | GCATC | 5 cut(s) | 544, 1135, 1162, 1430, 1753 |
| SfcI | CTRYAG | 2 cut(s) | 880, 2127 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 599 |
| SfoI | GGCGCC | 1 cut(s) | 1343 |
| SinI | GGWCC | 7 cut(s) | 146, 151, 545, 661, 953, 1057, 1135 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1508 |
| Sse9I | AATT | 7 cut(s) | 997, 1004, 1079, 1482, 1657, 2046, 2161 |
| SseBI | AGGCCT | 1 cut(s) | 461 |
| SspDI | GGCGCC | 1 cut(s) | 1341 |
| SspMI | CTAG | 6 cut(s) | 293, 1701, 1737, 1881, 2018, 2139 |
| StuI | AGGCCT | 1 cut(s) | 461 |
| StyD4I | CCNGG | 4 cut(s) | 663, 906, 1025, 1864 |
| StyI | CCWWGG | 4 cut(s) | 948, 1053, 1712, 2002 |
| TaaI | ACNGT | 9 cut(s) | 29, 46, 307, 505, 532, 757, 793, 967, 2131 |
| TaiI | ACGT | 8 cut(s) | 478, 498, 599, 623, 1403, 1539, 1593, 1644 |
| TasI | AATT | 7 cut(s) | 997, 1004, 1079, 1482, 1657, 2046, 2161 |
| TatI | WGTACW | 1 cut(s) | 1095 |
| TauI | GCSGC | 4 cut(s) | 869, 1268, 1271, 2234 |
| TfiI | GAWTC | 1 cut(s) | 1675 |
| Tru1I | TTAA | 5 cut(s) | 53, 726, 1221, 1485, 1773 |
| Tru9I | TTAA | 5 cut(s) | 53, 726, 1221, 1485, 1773 |
| TscAI | CASTG | 5 cut(s) | 51, 740, 1504, 1976, 2136 |
| TseFI | GTSAC | 4 cut(s) | 46, 526, 1396, 1707 |
| TseI | GCWGC | 7 cut(s) | 1418, 1877, 2234, 2237, 2240, 2243, 2246 |
| Tsp45I | GTSAC | 4 cut(s) | 46, 526, 1396, 1707 |
| TspDTI | ATGAA | 5 cut(s) | 761, 998, 1595, 1616, 2078 |
| TspGWI | ACGGA | 8 cut(s) | 454, 674, 719, 890, 1290, 1364, 1769, 2225 |
| TspRI | CASTG | 5 cut(s) | 51, 740, 1504, 1976, 2136 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1249 |
| VneI | GTGCAC | 1 cut(s) | 184 |
| VpaK11BI | GGWCC | 7 cut(s) | 146, 151, 545, 661, 953, 1057, 1135 |
| XapI | RAATTY | 2 cut(s) | 1004, 2161 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1250, 1366 |
| XmiI | GTMKAC | 3 cut(s) | 507, 1992, 2075 |
| XmnI | GAANNNNTTC | 2 cut(s) | 200, 1721 |
| XspI | CTAG | 6 cut(s) | 293, 1701, 1737, 1881, 2018, 2139 |