DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF223 | PF02721 | 69 - 171 | 1.2e-09 | Domain of unknown function DUF223 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 424 |
| AclI | AACGTT | 1 cut(s) | 131 |
| AclWI | GGATC | 2 cut(s) | 74, 818 |
| AcsI | RAATTY | 2 cut(s) | 39, 207 |
| AcuI | CTGAAG | 1 cut(s) | 663 |
| AfaI | GTAC | 1 cut(s) | 465 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 2 cut(s) | 116, 147 |
| AgsI | TTSAA | 4 cut(s) | 44, 401, 588, 635 |
| AluBI | AGCT | 4 cut(s) | 172, 438, 453, 652 |
| AluI | AGCT | 4 cut(s) | 172, 438, 453, 652 |
| Alw26I | GTCTC | 1 cut(s) | 808 |
| AlwI | GGATC | 2 cut(s) | 74, 818 |
| AoxI | GGCC | 1 cut(s) | 307 |
| ApeKI | GCWGC | 2 cut(s) | 157, 728 |
| ApoI | RAATTY | 2 cut(s) | 39, 207 |
| AspLEI | GCGC | 1 cut(s) | 51 |
| AsuHPI | GGTGA | 3 cut(s) | 115, 127, 158 |
| AsuII | TTCGAA | 1 cut(s) | 205 |
| BanII | GRGCYC | 1 cut(s) | 225 |
| BbsI | GAAGAC | 1 cut(s) | 563 |
| BbvI | GCAGC | 2 cut(s) | 169, 715 |
| BceAI | ACGGC | 1 cut(s) | 567 |
| BcoDI | GTCTC | 1 cut(s) | 808 |
| BfmI | CTRYAG | 3 cut(s) | 155, 439, 565 |
| BfoI | RGCGCY | 1 cut(s) | 52 |
| BisI | GCNGC | 3 cut(s) | 158, 424, 729 |
| BlsI | GCNGC | 3 cut(s) | 159, 425, 730 |
| BmsI | GCATC | 2 cut(s) | 331, 395 |
| BoxI | GACNNNNGTC | 1 cut(s) | 567 |
| BpiI | GAAGAC | 1 cut(s) | 563 |
| Bpu14I | TTCGAA | 1 cut(s) | 205 |
| BpuEI | CTTGAG | 1 cut(s) | 239 |
| BsaAI | YACGTR | 2 cut(s) | 119, 150 |
| BsaJI | CCNNGG | 2 cut(s) | 349, 761 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 89 |
| Bse1I | ACTGG | 2 cut(s) | 138, 496 |
| BseDI | CCNNGG | 2 cut(s) | 349, 761 |
| BseGI | GGATG | 3 cut(s) | 237, 334, 386 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 89 |
| BseMII | CTCAG | 3 cut(s) | 24, 618, 819 |
| BseNI | ACTGG | 2 cut(s) | 138, 496 |
| BseXI | GCAGC | 2 cut(s) | 169, 715 |
| BsgI | GTGCAG | 2 cut(s) | 459, 714 |
| BshFI | GGCC | 1 cut(s) | 309 |
| BsiSI | CCGG | 1 cut(s) | 770 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 89 |
| BsmAI | GTCTC | 1 cut(s) | 808 |
| BsnI | GGCC | 1 cut(s) | 309 |
| Bsp119I | TTCGAA | 1 cut(s) | 205 |
| Bsp1286I | GDGCHC | 1 cut(s) | 225 |
| Bsp143I | GATC | 4 cut(s) | 79, 243, 558, 823 |
| BspACI | CCGC | 1 cut(s) | 424 |
| BspANI | GGCC | 1 cut(s) | 309 |
| BspCNI | CTCAG | 3 cut(s) | 25, 617, 818 |
| BspMAI | CTGCAG | 1 cut(s) | 159 |
| BspPI | GGATC | 2 cut(s) | 74, 818 |
| BspT104I | TTCGAA | 1 cut(s) | 205 |
| BsrI | ACTGG | 2 cut(s) | 138, 496 |
| BssECI | CCNNGG | 2 cut(s) | 349, 761 |
| BssMI | GATC | 4 cut(s) | 79, 243, 558, 823 |
| BssT1I | CCWWGG | 1 cut(s) | 761 |
| Bst4CI | ACNGT | 3 cut(s) | 64, 202, 569 |
| Bst6I | CTCTTC | 2 cut(s) | 9, 639 |
| BstBAI | YACGTR | 2 cut(s) | 119, 150 |
| BstBI | TTCGAA | 1 cut(s) | 205 |
| BstC8I | GCNNGC | 3 cut(s) | 263, 446, 580 |
| BstDEI | CTNAG | 3 cut(s) | 33, 604, 805 |
| BstDSI | CCRYGG | 1 cut(s) | 349 |
| BstF5I | GGATG | 3 cut(s) | 237, 334, 386 |
| BstH2I | RGCGCY | 1 cut(s) | 52 |
| BstHHI | GCGC | 1 cut(s) | 51 |
| BstKTI | GATC | 4 cut(s) | 82, 246, 561, 826 |
| BstMAI | GTCTC | 1 cut(s) | 808 |
| BstMBI | GATC | 4 cut(s) | 79, 243, 558, 823 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 55, 450 |
| BstNSI | RCATGY | 1 cut(s) | 697 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 567 |
| BstSFI | CTRYAG | 3 cut(s) | 155, 439, 565 |
| BstV1I | GCAGC | 2 cut(s) | 169, 715 |
| BstV2I | GAAGAC | 1 cut(s) | 563 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 491 |
| BsuRI | GGCC | 1 cut(s) | 309 |
| BtgI | CCRYGG | 1 cut(s) | 349 |
| BtgZI | GCGATG | 3 cut(s) | 52, 530, 694 |
| BtsCI | GGATG | 3 cut(s) | 237, 334, 386 |
| BtsIMutI | CAGTG | 3 cut(s) | 145, 198, 489 |
| Cac8I | GCNNGC | 3 cut(s) | 263, 446, 580 |
| CfoI | GCGC | 1 cut(s) | 51 |
| Csp6I | GTAC | 1 cut(s) | 464 |
| CviAII | CATG | 3 cut(s) | 187, 694, 725 |
| CviQI | GTAC | 1 cut(s) | 464 |
| DdeI | CTNAG | 3 cut(s) | 33, 604, 805 |
| DpnI | GATC | 4 cut(s) | 81, 245, 560, 825 |
| DpnII | GATC | 4 cut(s) | 79, 243, 558, 823 |
| DraI | TTTAAA | 2 cut(s) | 96, 813 |
| Eam1104I | CTCTTC | 2 cut(s) | 9, 639 |
| EarI | CTCTTC | 2 cut(s) | 9, 639 |
| Eco130I | CCWWGG | 1 cut(s) | 761 |
| Eco147I | AGGCCT | 1 cut(s) | 309 |
| Eco24I | GRGCYC | 1 cut(s) | 225 |
| Eco57I | CTGAAG | 1 cut(s) | 663 |
| EcoRI | GAATTC | 1 cut(s) | 207 |
| EcoT14I | CCWWGG | 1 cut(s) | 761 |
| EcoT38I | GRGCYC | 1 cut(s) | 225 |
| ErhI | CCWWGG | 1 cut(s) | 761 |
| FaeI | CATG | 3 cut(s) | 190, 697, 728 |
| FatI | CATG | 3 cut(s) | 186, 693, 724 |
| Fnu4HI | GCNGC | 3 cut(s) | 158, 424, 729 |
| FokI | GGATG | 3 cut(s) | 224, 341, 373 |
| FriOI | GRGCYC | 1 cut(s) | 225 |
| Fsp4HI | GCNGC | 3 cut(s) | 158, 424, 729 |
| GlaI | GCGC | 1 cut(s) | 50 |
| GluI | GCNGC | 3 cut(s) | 158, 424, 729 |
| HaeII | RGCGCY | 1 cut(s) | 52 |
| HaeIII | GGCC | 1 cut(s) | 309 |
| HapII | CCGG | 1 cut(s) | 770 |
| HhaI | GCGC | 1 cut(s) | 51 |
| Hin1II | CATG | 3 cut(s) | 190, 697, 728 |
| Hin6I | GCGC | 1 cut(s) | 49 |
| HinP1I | GCGC | 1 cut(s) | 49 |
| HinfI | GANTC | 7 cut(s) | 249, 272, 354, 621, 631, 669, 766 |
| HpaII | CCGG | 1 cut(s) | 770 |
| HphI | GGTGA | 3 cut(s) | 115, 127, 158 |
| Hpy166II | GTNNAC | 1 cut(s) | 135 |
| Hpy188I | TCNGA | 4 cut(s) | 248, 607, 661, 808 |
| Hpy188III | TCNNGA | 5 cut(s) | 44, 212, 241, 518, 641 |
| Hpy8I | GTNNAC | 1 cut(s) | 135 |
| HpyAV | CCTTC | 2 cut(s) | 173, 299 |
| HpyCH4III | ACNGT | 3 cut(s) | 64, 202, 569 |
| HpyCH4IV | ACGT | 4 cut(s) | 118, 131, 149, 674 |
| HpyCH4V | TGCA | 6 cut(s) | 157, 261, 344, 476, 697, 731 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 55, 450 |
| HpyF3I | CTNAG | 3 cut(s) | 33, 604, 805 |
| HpySE526I | ACGT | 4 cut(s) | 118, 131, 149, 674 |
| Hsp92II | CATG | 3 cut(s) | 190, 697, 728 |
| HspAI | GCGC | 1 cut(s) | 49 |
| Kzo9I | GATC | 4 cut(s) | 79, 243, 558, 823 |
| Lsp1109I | GCAGC | 2 cut(s) | 169, 715 |
| LweI | GCATC | 2 cut(s) | 331, 395 |
| MaeII | ACGT | 4 cut(s) | 118, 131, 149, 674 |
| MaeIII | GTNAC | 2 cut(s) | 212, 683 |
| MalI | GATC | 4 cut(s) | 81, 245, 560, 825 |
| MboI | GATC | 4 cut(s) | 79, 243, 558, 823 |
| MboII | GAAGA | 3 cut(s) | 26, 563, 656 |
| MhlI | GDGCHC | 1 cut(s) | 225 |
| MluCI | AATT | 6 cut(s) | 39, 85, 207, 314, 521, 776 |
| MlyI | GAGTC | 2 cut(s) | 258, 760 |
| MmeI | TCCRAC | 1 cut(s) | 414 |
| MnlI | CCTC | 5 cut(s) | 320, 541, 611, 648, 729 |
| MseI | TTAA | 3 cut(s) | 95, 507, 812 |
| MslI | CAYNNNNRTG | 1 cut(s) | 692 |
| MspI | CCGG | 1 cut(s) | 770 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 55, 450 |
| NdeII | GATC | 4 cut(s) | 79, 243, 558, 823 |
| NlaIII | CATG | 3 cut(s) | 190, 697, 728 |
| NmuCI | GTSAC | 2 cut(s) | 212, 683 |
| NspI | RCATGY | 1 cut(s) | 697 |
| NspV | TTCGAA | 1 cut(s) | 205 |
| PceI | AGGCCT | 1 cut(s) | 309 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 202 |
| PfeI | GAWTC | 5 cut(s) | 272, 354, 621, 631, 669 |
| PkrI | GCNGC | 3 cut(s) | 159, 425, 730 |
| PleI | GAGTC | 2 cut(s) | 257, 760 |
| PpsI | GAGTC | 2 cut(s) | 257, 760 |
| Ppu21I | YACGTR | 2 cut(s) | 119, 150 |
| PshAI | GACNNNNGTC | 1 cut(s) | 567 |
| Psp1406I | AACGTT | 1 cut(s) | 131 |
| PstI | CTGCAG | 1 cut(s) | 159 |
| RsaI | GTAC | 1 cut(s) | 465 |
| RsaNI | GTAC | 1 cut(s) | 464 |
| RseI | CAYNNNNRTG | 1 cut(s) | 692 |
| SaqAI | TTAA | 3 cut(s) | 95, 507, 812 |
| SatI | GCNGC | 3 cut(s) | 158, 424, 729 |
| Sau3AI | GATC | 4 cut(s) | 79, 243, 558, 823 |
| SchI | GAGTC | 2 cut(s) | 258, 760 |
| SduI | GDGCHC | 1 cut(s) | 225 |
| SfaNI | GCATC | 2 cut(s) | 331, 395 |
| SfcI | CTRYAG | 3 cut(s) | 155, 439, 565 |
| SfuI | TTCGAA | 1 cut(s) | 205 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 692 |
| SmlI | CTYRAG | 1 cut(s) | 218 |
| SmoI | CTYRAG | 1 cut(s) | 218 |
| Sse9I | AATT | 6 cut(s) | 39, 85, 207, 314, 521, 776 |
| SseBI | AGGCCT | 1 cut(s) | 309 |
| SsiI | CCGC | 1 cut(s) | 424 |
| StuI | AGGCCT | 1 cut(s) | 309 |
| StyI | CCWWGG | 1 cut(s) | 761 |
| TaaI | ACNGT | 3 cut(s) | 64, 202, 569 |
| TaiI | ACGT | 4 cut(s) | 121, 134, 152, 677 |
| TaqI | TCGA | 2 cut(s) | 205, 561 |
| TasI | AATT | 6 cut(s) | 39, 85, 207, 314, 521, 776 |
| TauI | GCSGC | 1 cut(s) | 426 |
| TfiI | GAWTC | 5 cut(s) | 272, 354, 621, 631, 669 |
| Tru1I | TTAA | 3 cut(s) | 95, 507, 812 |
| Tru9I | TTAA | 3 cut(s) | 95, 507, 812 |
| TscAI | CASTG | 3 cut(s) | 145, 205, 496 |
| TseFI | GTSAC | 2 cut(s) | 212, 683 |
| TseI | GCWGC | 2 cut(s) | 157, 728 |
| Tsp45I | GTSAC | 2 cut(s) | 212, 683 |
| TspDTI | ATGAA | 5 cut(s) | 318, 345, 346, 350, 429 |
| TspGWI | ACGGA | 2 cut(s) | 242, 366 |
| TspRI | CASTG | 3 cut(s) | 145, 205, 496 |
| XapI | RAATTY | 2 cut(s) | 39, 207 |
| XceI | RCATGY | 1 cut(s) | 697 |