DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 139 - 269 | 6.3e-09 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 43 |
| AccB1I | GGYRCC | 1 cut(s) | 43 |
| AccI | GTMKAC | 1 cut(s) | 98 |
| AciI | CCGC | 1 cut(s) | 47 |
| AclI | AACGTT | 1 cut(s) | 439 |
| AclWI | GGATC | 2 cut(s) | 383, 396 |
| AcsI | RAATTY | 4 cut(s) | 5, 339, 549, 985 |
| AfaI | GTAC | 7 cut(s) | 45, 76, 211, 349, 467, 566, 792 |
| AflIII | ACRYGT | 1 cut(s) | 449 |
| AgsI | TTSAA | 7 cut(s) | 148, 205, 318, 555, 587, 673, 778 |
| AjnI | CCWGG | 1 cut(s) | 57 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 627, 659 |
| AluBI | AGCT | 5 cut(s) | 376, 483, 629, 821, 953 |
| AluI | AGCT | 5 cut(s) | 376, 483, 629, 821, 953 |
| AlwI | GGATC | 2 cut(s) | 383, 396 |
| AoxI | GGCC | 1 cut(s) | 378 |
| ApoI | RAATTY | 4 cut(s) | 5, 339, 549, 985 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 651, 683 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 740 |
| Asp718I | GGTACC | 1 cut(s) | 43 |
| AsuC2I | CCSGG | 1 cut(s) | 248 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 66, 99, 864, 897 |
| BamHI | GGATCC | 1 cut(s) | 388 |
| BanI | GGYRCC | 1 cut(s) | 43 |
| BbsI | GAAGAC | 1 cut(s) | 594 |
| BccI | CCATC | 2 cut(s) | 23, 122 |
| BciT130I | CCWGG | 1 cut(s) | 59 |
| BcnI | CCSGG | 1 cut(s) | 248 |
| BfaI | CTAG | 2 cut(s) | 140, 480 |
| BfmI | CTRYAG | 1 cut(s) | 822 |
| BglII | AGATCT | 1 cut(s) | 843 |
| BmcAI | AGTACT | 1 cut(s) | 211 |
| Bme1390I | CCNGG | 2 cut(s) | 59, 248 |
| BmiI | GGNNCC | 3 cut(s) | 45, 217, 390 |
| BmrFI | CCNGG | 2 cut(s) | 59, 248 |
| BmsI | GCATC | 1 cut(s) | 437 |
| BpiI | GAAGAC | 1 cut(s) | 594 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 242, 274, 624, 656, 937, 969 |
| BpmI | CTGGAG | 1 cut(s) | 651 |
| BpuEI | CTTGAG | 1 cut(s) | 766 |
| BpuMI | CCSGG | 1 cut(s) | 248 |
| Bsa29I | ATCGAT | 1 cut(s) | 127 |
| BsaJI | CCNNGG | 2 cut(s) | 57, 560 |
| BsaWI | WCCGGW | 1 cut(s) | 515 |
| Bse1I | ACTGG | 3 cut(s) | 76, 217, 798 |
| BseBI | CCWGG | 1 cut(s) | 59 |
| BseCI | ATCGAT | 1 cut(s) | 127 |
| BseDI | CCNNGG | 2 cut(s) | 57, 560 |
| BseGI | GGATG | 2 cut(s) | 114, 243 |
| BseNI | ACTGG | 3 cut(s) | 76, 217, 798 |
| BseRI | GAGGAG | 1 cut(s) | 208 |
| Bsh1285I | CGRYCG | 1 cut(s) | 516 |
| BshFI | GGCC | 1 cut(s) | 380 |
| BshNI | GGYRCC | 1 cut(s) | 43 |
| BshVI | ATCGAT | 1 cut(s) | 127 |
| BsiEI | CGRYCG | 1 cut(s) | 516 |
| BsiSI | CCGG | 2 cut(s) | 248, 516 |
| BslFI | GGGAC | 1 cut(s) | 275 |
| BsmFI | GGGAC | 1 cut(s) | 275 |
| BsnI | GGCC | 1 cut(s) | 380 |
| Bsp143I | GATC | 2 cut(s) | 388, 843 |
| Bsp19I | CCATGG | 1 cut(s) | 560 |
| BspACI | CCGC | 1 cut(s) | 47 |
| BspANI | GGCC | 1 cut(s) | 380 |
| BspDI | ATCGAT | 1 cut(s) | 127 |
| BspLI | GGNNCC | 3 cut(s) | 45, 217, 390 |
| BspPI | GGATC | 2 cut(s) | 383, 396 |
| BspT107I | GGYRCC | 1 cut(s) | 43 |
| BsrI | ACTGG | 3 cut(s) | 76, 217, 798 |
| BssECI | CCNNGG | 2 cut(s) | 57, 560 |
| BssMI | GATC | 2 cut(s) | 388, 843 |
| BssT1I | CCWWGG | 1 cut(s) | 560 |
| Bst2UI | CCWGG | 1 cut(s) | 59 |
| Bst4CI | ACNGT | 6 cut(s) | 33, 82, 96, 103, 865, 880 |
| Bst6I | CTCTTC | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 3 cut(s) | 324, 378, 475 |
| BstDSI | CCRYGG | 1 cut(s) | 560 |
| BstF5I | GGATG | 2 cut(s) | 114, 243 |
| BstKTI | GATC | 2 cut(s) | 391, 846 |
| BstMBI | GATC | 2 cut(s) | 388, 843 |
| BstMCI | CGRYCG | 1 cut(s) | 516 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 332 |
| BstNI | CCWGG | 1 cut(s) | 59 |
| BstNSI | RCATGY | 1 cut(s) | 154 |
| BstSCI | CCNGG | 2 cut(s) | 57, 246 |
| BstSFI | CTRYAG | 1 cut(s) | 822 |
| BstV2I | GAAGAC | 1 cut(s) | 594 |
| BstX2I | RGATCY | 2 cut(s) | 388, 843 |
| BstYI | RGATCY | 2 cut(s) | 388, 843 |
| Bsu15I | ATCGAT | 1 cut(s) | 127 |
| BsuRI | GGCC | 1 cut(s) | 380 |
| BsuTUI | ATCGAT | 1 cut(s) | 127 |
| BtgI | CCRYGG | 1 cut(s) | 560 |
| BtsCI | GGATG | 2 cut(s) | 114, 243 |
| BtsI | GCAGTG | 1 cut(s) | 973 |
| BtsIMutI | CAGTG | 3 cut(s) | 69, 87, 973 |
| Cac8I | GCNNGC | 3 cut(s) | 324, 378, 475 |
| ClaI | ATCGAT | 1 cut(s) | 127 |
| Csp6I | GTAC | 7 cut(s) | 44, 75, 210, 348, 466, 565, 791 |
| CviAII | CATG | 3 cut(s) | 50, 151, 561 |
| CviJI | RGCY | 8 cut(s) | 216, 335, 376, 380, 483, 629, 821, 953 |
| CviKI_1 | RGCY | 8 cut(s) | 216, 335, 376, 380, 483, 629, 821, 953 |
| CviQI | GTAC | 7 cut(s) | 44, 75, 210, 348, 466, 565, 791 |
| DpnI | GATC | 2 cut(s) | 390, 845 |
| DpnII | GATC | 2 cut(s) | 388, 843 |
| DraI | TTTAAA | 1 cut(s) | 88 |
| Eam1104I | CTCTTC | 1 cut(s) | 352 |
| EarI | CTCTTC | 1 cut(s) | 352 |
| Eco130I | CCWWGG | 1 cut(s) | 560 |
| EcoRII | CCWGG | 1 cut(s) | 57 |
| EcoT14I | CCWWGG | 1 cut(s) | 560 |
| EcoT22I | ATGCAT | 1 cut(s) | 501 |
| ErhI | CCWWGG | 1 cut(s) | 560 |
| FaeI | CATG | 3 cut(s) | 53, 154, 564 |
| FaqI | GGGAC | 1 cut(s) | 275 |
| FatI | CATG | 3 cut(s) | 49, 150, 560 |
| FblI | GTMKAC | 1 cut(s) | 98 |
| FokI | GGATG | 2 cut(s) | 101, 230 |
| FspBI | CTAG | 2 cut(s) | 140, 480 |
| GsuI | CTGGAG | 1 cut(s) | 651 |
| HaeIII | GGCC | 1 cut(s) | 380 |
| HapII | CCGG | 2 cut(s) | 248, 516 |
| Hin1II | CATG | 3 cut(s) | 53, 154, 564 |
| HincII | GTYRAC | 1 cut(s) | 256 |
| HindII | GTYRAC | 1 cut(s) | 256 |
| HinfI | GANTC | 4 cut(s) | 580, 673, 917, 938 |
| HpaI | GTTAAC | 1 cut(s) | 256 |
| HpaII | CCGG | 2 cut(s) | 248, 516 |
| Hpy166II | GTNNAC | 4 cut(s) | 99, 256, 799, 971 |
| Hpy188I | TCNGA | 6 cut(s) | 26, 168, 534, 678, 811, 992 |
| Hpy188III | TCNNGA | 4 cut(s) | 202, 392, 584, 670 |
| Hpy8I | GTNNAC | 4 cut(s) | 99, 256, 799, 971 |
| HpyAV | CCTTC | 1 cut(s) | 321 |
| HpyCH4III | ACNGT | 6 cut(s) | 33, 82, 96, 103, 865, 880 |
| HpyCH4IV | ACGT | 2 cut(s) | 439, 451 |
| HpyCH4V | TGCA | 2 cut(s) | 499, 657 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 332 |
| HpySE526I | ACGT | 2 cut(s) | 439, 451 |
| Hsp92II | CATG | 3 cut(s) | 53, 154, 564 |
| KpnI | GGTACC | 1 cut(s) | 47 |
| KspAI | GTTAAC | 1 cut(s) | 256 |
| Kzo9I | GATC | 2 cut(s) | 388, 843 |
| LmnI | GCTCC | 1 cut(s) | 221 |
| LweI | GCATC | 1 cut(s) | 437 |
| MaeI | CTAG | 2 cut(s) | 140, 480 |
| MaeII | ACGT | 2 cut(s) | 439, 451 |
| MaeIII | GTNAC | 2 cut(s) | 361, 859 |
| MalI | GATC | 2 cut(s) | 390, 845 |
| MboI | GATC | 2 cut(s) | 388, 843 |
| MboII | GAAGA | 7 cut(s) | 306, 369, 599, 748, 861, 879, 993 |
| MflI | RGATCY | 2 cut(s) | 388, 843 |
| MluCI | AATT | 8 cut(s) | 5, 339, 549, 574, 603, 618, 680, 985 |
| MlyI | GAGTC | 1 cut(s) | 947 |
| Mph1103I | ATGCAT | 1 cut(s) | 501 |
| MroXI | GAANNNNTTC | 1 cut(s) | 740 |
| MseI | TTAA | 3 cut(s) | 87, 255, 573 |
| MslI | CAYNNNNRTG | 1 cut(s) | 418 |
| MspI | CCGG | 2 cut(s) | 248, 516 |
| MspR9I | CCNGG | 2 cut(s) | 59, 248 |
| MvaI | CCWGG | 1 cut(s) | 59 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 332 |
| NciI | CCSGG | 1 cut(s) | 248 |
| NcoI | CCATGG | 1 cut(s) | 560 |
| NdeII | GATC | 2 cut(s) | 388, 843 |
| NlaIII | CATG | 3 cut(s) | 53, 154, 564 |
| NlaIV | GGNNCC | 3 cut(s) | 45, 217, 390 |
| NmuCI | GTSAC | 1 cut(s) | 859 |
| NsiI | ATGCAT | 1 cut(s) | 501 |
| NspI | RCATGY | 1 cut(s) | 154 |
| PdmI | GAANNNNTTC | 1 cut(s) | 740 |
| PfeI | GAWTC | 3 cut(s) | 580, 673, 917 |
| PfoI | TCCNGGA | 1 cut(s) | 246 |
| PleI | GAGTC | 1 cut(s) | 946 |
| PpsI | GAGTC | 1 cut(s) | 946 |
| Psp1406I | AACGTT | 1 cut(s) | 439 |
| Psp6I | CCWGG | 1 cut(s) | 57 |
| PspGI | CCWGG | 1 cut(s) | 57 |
| PspN4I | GGNNCC | 3 cut(s) | 45, 217, 390 |
| PsuI | RGATCY | 2 cut(s) | 388, 843 |
| RsaI | GTAC | 7 cut(s) | 45, 76, 211, 349, 467, 566, 792 |
| RsaNI | GTAC | 7 cut(s) | 44, 75, 210, 348, 466, 565, 791 |
| RseI | CAYNNNNRTG | 1 cut(s) | 418 |
| SaqAI | TTAA | 3 cut(s) | 87, 255, 573 |
| Sau3AI | GATC | 2 cut(s) | 388, 843 |
| ScaI | AGTACT | 1 cut(s) | 211 |
| SchI | GAGTC | 1 cut(s) | 947 |
| ScrFI | CCNGG | 2 cut(s) | 59, 248 |
| SfaNI | GCATC | 1 cut(s) | 437 |
| SfcI | CTRYAG | 1 cut(s) | 822 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 418 |
| SmlI | CTYRAG | 1 cut(s) | 781 |
| SmoI | CTYRAG | 1 cut(s) | 781 |
| Sse9I | AATT | 8 cut(s) | 5, 339, 549, 574, 603, 618, 680, 985 |
| SsiI | CCGC | 1 cut(s) | 47 |
| SspMI | CTAG | 2 cut(s) | 140, 480 |
| StyD4I | CCNGG | 2 cut(s) | 57, 246 |
| StyI | CCWWGG | 1 cut(s) | 560 |
| TaaI | ACNGT | 6 cut(s) | 33, 82, 96, 103, 865, 880 |
| TaiI | ACGT | 2 cut(s) | 442, 454 |
| TaqI | TCGA | 5 cut(s) | 121, 127, 234, 512, 890 |
| TasI | AATT | 8 cut(s) | 5, 339, 549, 574, 603, 618, 680, 985 |
| TatI | WGTACW | 2 cut(s) | 209, 790 |
| TfiI | GAWTC | 3 cut(s) | 580, 673, 917 |
| Tru1I | TTAA | 3 cut(s) | 87, 255, 573 |
| Tru9I | TTAA | 3 cut(s) | 87, 255, 573 |
| TscAI | CASTG | 3 cut(s) | 76, 87, 973 |
| TseFI | GTSAC | 1 cut(s) | 859 |
| Tsp45I | GTSAC | 1 cut(s) | 859 |
| TspDTI | ATGAA | 4 cut(s) | 17, 66, 220, 615 |
| TspRI | CASTG | 3 cut(s) | 76, 87, 973 |
| XapI | RAATTY | 4 cut(s) | 5, 339, 549, 985 |
| XceI | RCATGY | 1 cut(s) | 154 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 752 |
| XmiI | GTMKAC | 1 cut(s) | 98 |
| XmnI | GAANNNNTTC | 1 cut(s) | 740 |
| XspI | CTAG | 2 cut(s) | 140, 480 |
| ZrmI | AGTACT | 1 cut(s) | 211 |
| Zsp2I | ATGCAT | 1 cut(s) | 501 |