DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF223 | PF02721 | 5 - 103 | 4.8e-14 | Domain of unknown function DUF223 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 667 |
| AclWI | GGATC | 3 cut(s) | 502, 842, 855 |
| AcsI | RAATTY | 4 cut(s) | 336, 365, 520, 921 |
| AcuI | CTGAAG | 1 cut(s) | 716 |
| AfaI | GTAC | 4 cut(s) | 419, 441, 647, 725 |
| AgsI | TTSAA | 7 cut(s) | 259, 292, 311, 320, 430, 781, 838 |
| AjnI | CCWGG | 2 cut(s) | 648, 804 |
| AluBI | AGCT | 2 cut(s) | 80, 865 |
| AluI | AGCT | 2 cut(s) | 80, 865 |
| Alw26I | GTCTC | 3 cut(s) | 116, 446, 707 |
| AlwI | GGATC | 3 cut(s) | 502, 842, 855 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 830 |
| ApoI | RAATTY | 4 cut(s) | 336, 365, 520, 921 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 598 |
| AspS9I | GGNCC | 1 cut(s) | 915 |
| AsuHPI | GGTGA | 2 cut(s) | 152, 887 |
| AvaII | GGWCC | 1 cut(s) | 915 |
| BamHI | GGATCC | 1 cut(s) | 847 |
| BccI | CCATC | 4 cut(s) | 101, 610, 673, 878 |
| BciT130I | CCWGG | 2 cut(s) | 650, 806 |
| BclI | TGATCA | 2 cut(s) | 268, 370 |
| BcoDI | GTCTC | 3 cut(s) | 116, 446, 707 |
| BfaI | CTAG | 1 cut(s) | 567 |
| BfuAI | ACCTGC | 1 cut(s) | 667 |
| BglII | AGATCT | 1 cut(s) | 412 |
| Bme1390I | CCNGG | 2 cut(s) | 650, 806 |
| Bme18I | GGWCC | 1 cut(s) | 915 |
| BmgT120I | GGNCC | 1 cut(s) | 915 |
| BmiI | GGNNCC | 2 cut(s) | 27, 849 |
| BmrFI | CCNGG | 2 cut(s) | 650, 806 |
| BmsI | GCATC | 1 cut(s) | 928 |
| BoxI | GACNNNNGTC | 2 cut(s) | 458, 493 |
| BpuEI | CTTGAG | 1 cut(s) | 559 |
| BsaI | GGTCTC | 1 cut(s) | 116 |
| Bse1I | ACTGG | 3 cut(s) | 608, 627, 750 |
| Bse3DI | GCAATG | 1 cut(s) | 303 |
| BseBI | CCWGG | 2 cut(s) | 650, 806 |
| BseGI | GGATG | 3 cut(s) | 10, 109, 889 |
| BseMI | GCAATG | 1 cut(s) | 303 |
| BseNI | ACTGG | 3 cut(s) | 608, 627, 750 |
| BsmAI | GTCTC | 3 cut(s) | 116, 446, 707 |
| Bso31I | GGTCTC | 1 cut(s) | 116 |
| Bsp143I | GATC | 6 cut(s) | 48, 268, 370, 412, 507, 847 |
| BspHI | TCATGA | 1 cut(s) | 16 |
| BspLI | GGNNCC | 2 cut(s) | 27, 849 |
| BspMI | ACCTGC | 1 cut(s) | 667 |
| BspPI | GGATC | 3 cut(s) | 502, 842, 855 |
| BspTNI | GGTCTC | 1 cut(s) | 116 |
| BsrDI | GCAATG | 1 cut(s) | 303 |
| BsrI | ACTGG | 3 cut(s) | 608, 627, 750 |
| BssMI | GATC | 6 cut(s) | 48, 268, 370, 412, 507, 847 |
| Bst2UI | CCWGG | 2 cut(s) | 650, 806 |
| Bst4CI | ACNGT | 3 cut(s) | 422, 460, 826 |
| BstC8I | GCNNGC | 1 cut(s) | 385 |
| BstDEI | CTNAG | 1 cut(s) | 81 |
| BstF5I | GGATG | 3 cut(s) | 10, 109, 889 |
| BstKTI | GATC | 6 cut(s) | 51, 271, 373, 415, 510, 850 |
| BstMAI | GTCTC | 3 cut(s) | 116, 446, 707 |
| BstMBI | GATC | 6 cut(s) | 48, 268, 370, 412, 507, 847 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 152 |
| BstNI | CCWGG | 2 cut(s) | 650, 806 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 458, 493 |
| BstSCI | CCNGG | 2 cut(s) | 648, 804 |
| BstX2I | RGATCY | 3 cut(s) | 412, 507, 847 |
| BstYI | RGATCY | 3 cut(s) | 412, 507, 847 |
| BtsCI | GGATG | 3 cut(s) | 10, 109, 889 |
| BtsIMutI | CAGTG | 2 cut(s) | 615, 831 |
| BveI | ACCTGC | 1 cut(s) | 667 |
| Cac8I | GCNNGC | 1 cut(s) | 385 |
| CaiI | CAGNNNCTG | 1 cut(s) | 830 |
| CciI | TCATGA | 1 cut(s) | 16 |
| Cfr13I | GGNCC | 1 cut(s) | 915 |
| CseI | GACGC | 1 cut(s) | 152 |
| Csp6I | GTAC | 4 cut(s) | 418, 440, 646, 724 |
| CviAII | CATG | 5 cut(s) | 17, 152, 388, 449, 580 |
| CviJI | RGCY | 4 cut(s) | 80, 730, 787, 865 |
| CviKI_1 | RGCY | 4 cut(s) | 80, 730, 787, 865 |
| CviQI | GTAC | 4 cut(s) | 418, 440, 646, 724 |
| DdeI | CTNAG | 1 cut(s) | 81 |
| DpnI | GATC | 6 cut(s) | 50, 270, 372, 414, 509, 849 |
| DpnII | GATC | 6 cut(s) | 48, 268, 370, 412, 507, 847 |
| DraI | TTTAAA | 2 cut(s) | 525, 633 |
| Eco31I | GGTCTC | 1 cut(s) | 116 |
| Eco47I | GGWCC | 1 cut(s) | 915 |
| Eco57I | CTGAAG | 1 cut(s) | 716 |
| EcoRII | CCWGG | 2 cut(s) | 648, 804 |
| FaeI | CATG | 5 cut(s) | 20, 155, 391, 452, 583 |
| FatI | CATG | 5 cut(s) | 16, 151, 387, 448, 579 |
| FbaI | TGATCA | 2 cut(s) | 268, 370 |
| FokI | GGATG | 3 cut(s) | 17, 116, 896 |
| FspBI | CTAG | 1 cut(s) | 567 |
| HgaI | GACGC | 1 cut(s) | 152 |
| Hin1II | CATG | 5 cut(s) | 20, 155, 391, 452, 583 |
| HincII | GTYRAC | 1 cut(s) | 577 |
| HindII | GTYRAC | 1 cut(s) | 577 |
| HindIII | AAGCTT | 1 cut(s) | 863 |
| HinfI | GANTC | 6 cut(s) | 167, 262, 277, 351, 473, 494 |
| HphI | GGTGA | 2 cut(s) | 152, 887 |
| Hpy166II | GTNNAC | 2 cut(s) | 187, 577 |
| Hpy188I | TCNGA | 5 cut(s) | 40, 53, 172, 276, 796 |
| Hpy188III | TCNNGA | 7 cut(s) | 17, 66, 124, 248, 259, 266, 341 |
| Hpy8I | GTNNAC | 2 cut(s) | 187, 577 |
| HpyAV | CCTTC | 1 cut(s) | 314 |
| HpyCH4III | ACNGT | 3 cut(s) | 422, 460, 826 |
| HpyCH4IV | ACGT | 1 cut(s) | 871 |
| HpyCH4V | TGCA | 5 cut(s) | 155, 296, 517, 760, 941 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 152 |
| HpyF3I | CTNAG | 1 cut(s) | 81 |
| HpySE526I | ACGT | 1 cut(s) | 871 |
| Hsp92II | CATG | 5 cut(s) | 20, 155, 391, 452, 583 |
| Ksp22I | TGATCA | 2 cut(s) | 268, 370 |
| Kzo9I | GATC | 6 cut(s) | 48, 268, 370, 412, 507, 847 |
| LmnI | GCTCC | 1 cut(s) | 667 |
| LweI | GCATC | 1 cut(s) | 928 |
| MaeI | CTAG | 1 cut(s) | 567 |
| MaeII | ACGT | 1 cut(s) | 871 |
| MaeIII | GTNAC | 2 cut(s) | 140, 826 |
| MalI | GATC | 6 cut(s) | 50, 270, 372, 414, 509, 849 |
| MboI | GATC | 6 cut(s) | 48, 268, 370, 412, 507, 847 |
| MboII | GAAGA | 2 cut(s) | 223, 809 |
| MfeI | CAATTG | 1 cut(s) | 435 |
| MflI | RGATCY | 3 cut(s) | 412, 507, 847 |
| MlyI | GAGTC | 2 cut(s) | 286, 503 |
| MmeI | TCCRAC | 2 cut(s) | 223, 794 |
| MnlI | CCTC | 1 cut(s) | 526 |
| MroXI | GAANNNNTTC | 1 cut(s) | 598 |
| MseI | TTAA | 5 cut(s) | 524, 623, 632, 867, 945 |
| MspR9I | CCNGG | 2 cut(s) | 650, 806 |
| MunI | CAATTG | 1 cut(s) | 435 |
| MvaI | CCWGG | 2 cut(s) | 650, 806 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 152 |
| NdeII | GATC | 6 cut(s) | 48, 268, 370, 412, 507, 847 |
| NlaIII | CATG | 5 cut(s) | 20, 155, 391, 452, 583 |
| NlaIV | GGNNCC | 2 cut(s) | 27, 849 |
| NmuCI | GTSAC | 2 cut(s) | 140, 826 |
| PagI | TCATGA | 1 cut(s) | 16 |
| PdmI | GAANNNNTTC | 1 cut(s) | 598 |
| PfeI | GAWTC | 4 cut(s) | 167, 262, 351, 473 |
| PfoI | TCCNGGA | 1 cut(s) | 804 |
| PleI | GAGTC | 2 cut(s) | 285, 502 |
| PpsI | GAGTC | 2 cut(s) | 285, 502 |
| PshAI | GACNNNNGTC | 2 cut(s) | 458, 493 |
| Psp6I | CCWGG | 2 cut(s) | 648, 804 |
| PspGI | CCWGG | 2 cut(s) | 648, 804 |
| PspN4I | GGNNCC | 2 cut(s) | 27, 849 |
| PspPI | GGNCC | 1 cut(s) | 915 |
| PstNI | CAGNNNCTG | 1 cut(s) | 830 |
| PsuI | RGATCY | 3 cut(s) | 412, 507, 847 |
| RsaI | GTAC | 4 cut(s) | 419, 441, 647, 725 |
| RsaNI | GTAC | 4 cut(s) | 418, 440, 646, 724 |
| SaqAI | TTAA | 5 cut(s) | 524, 623, 632, 867, 945 |
| Sau3AI | GATC | 6 cut(s) | 48, 268, 370, 412, 507, 847 |
| Sau96I | GGNCC | 1 cut(s) | 915 |
| SchI | GAGTC | 2 cut(s) | 286, 503 |
| ScrFI | CCNGG | 2 cut(s) | 650, 806 |
| SfaNI | GCATC | 1 cut(s) | 928 |
| SinI | GGWCC | 1 cut(s) | 915 |
| SmlI | CTYRAG | 1 cut(s) | 538 |
| SmoI | CTYRAG | 1 cut(s) | 538 |
| SspMI | CTAG | 1 cut(s) | 567 |
| StyD4I | CCNGG | 2 cut(s) | 648, 804 |
| TaaI | ACNGT | 3 cut(s) | 422, 460, 826 |
| TaiI | ACGT | 1 cut(s) | 874 |
| TaqI | TCGA | 1 cut(s) | 65 |
| TatI | WGTACW | 1 cut(s) | 723 |
| TfiI | GAWTC | 4 cut(s) | 167, 262, 351, 473 |
| Tru1I | TTAA | 5 cut(s) | 524, 623, 632, 867, 945 |
| Tru9I | TTAA | 5 cut(s) | 524, 623, 632, 867, 945 |
| TscAI | CASTG | 2 cut(s) | 615, 831 |
| TseFI | GTSAC | 2 cut(s) | 140, 826 |
| Tsp45I | GTSAC | 2 cut(s) | 140, 826 |
| TspDTI | ATGAA | 8 cut(s) | 5, 33, 140, 147, 180, 404, 682, 833 |
| TspGWI | ACGGA | 1 cut(s) | 275 |
| TspRI | CASTG | 2 cut(s) | 615, 831 |
| VpaK11BI | GGWCC | 1 cut(s) | 915 |
| XapI | RAATTY | 4 cut(s) | 336, 365, 520, 921 |
| XmnI | GAANNNNTTC | 1 cut(s) | 598 |
| XspI | CTAG | 1 cut(s) | 567 |