Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010692

Physical Location & Seq

Genomic Coordinates Forward (+)

9215770 .. 9218010

Gene Structure 2241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGCGACGTATTTGAAGGGTACGAGCGTCAATACTGCGAGCTCTCAACCAATCTCTCTAGAAAATGTCACTCTGCATCGGTTCTCTCCAACGGAGAGGAGAAGAAGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTGATGTCTTGATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCTGTGTGTCTTTCTAAACTAAGAGAGTATAAATCTGATCTGAACCAATTGAAGAAGGAATTCAAACGAGTCTCTTCCGCAGATGCTAAGCCGTCTTCCCGTGAAGAGTTGATGGAATCCGGAATGGCGGATCTGCATGCAGTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCCGTGGAGAGGCTTGACCAATCAAGTGACAGAATCAGGGAGAGTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAATTGTCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAGCTTCATGGTGTGGATGACGCCATTGACAAGAGCAAGAAGGTGTTGACGGCTATGTCAAGGAGAATGACTAGGAACAAATGGATCATTACATCGGTAATCGTGGCTCTCGTTCTCGCCATCATCTTGATCATCTCATACAAGCTTTCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005483 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005802 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

222

Amino Acids

25.06

Weight (kDa)

9.06

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 92	1.8e-31	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	129 - 194	4.3e-23	Snare region anchored in the vesicle membrane C-terminus
Sec20	PF03908	136 - 217	1.2e-06	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26670
fragaria_vesca	FvH4_4g30751 FvH4_4g30751
malus_domestica	MD13G1068500.v1.1 MD16G1067300.v1.1
prunus_persica	Prupe.1G279400_v2.0.a1
pyrus_communis	pycom13g06030 pycom16g05880
rosa_chinensis	RchiOBHm_Chr4g0439151
rosa_laevigata	RLG00000006293
rosa_multiflora	Rmu_sc0002236.1_g000003 Rmu_sc0027506.1_g000004
rosa_rugosa	Rorug04G0316100 Rorug04G0316200
rosa_samantha	Rh4AG367000 Rh4BG378500 Rh4CG392800 Rh4DG373100
rosa_wichuraiana	Rw0G007520 Rw0G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	568
Acc16I	TGCGCA	1 cut(s)	507
AccIII	TCCGGA	2 cut(s)	159, 323
AciI	CCGC	2 cut(s)	282, 332
AclWI	GGATC	4 cut(s)	151, 177, 342, 605
AcsI	RAATTY	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	534
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	166, 387
AgsI	TTSAA	3 cut(s)	17, 256, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AluBI	AGCT	5 cut(s)	43, 146, 206, 517, 658
AluI	AGCT	5 cut(s)	43, 146, 206, 517, 658
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	280, 434
AlwI	GGATC	4 cut(s)	151, 177, 342, 605
AlwNI	CAGNNNCTG	1 cut(s)	350
Aor13HI	TCCGGA	2 cut(s)	159, 323
ApeKI	GCWGC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	263
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	508
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BanII	GRGCYC	1 cut(s)	45
BbsI	GAAGAC	2 cut(s)	291, 433
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	310, 641
BceAI	ACGGC	2 cut(s)	280, 579
BclI	TGATCA	2 cut(s)	355, 642
BcoDI	GTCTC	2 cut(s)	280, 434
BfaI	CTAG	2 cut(s)	60, 585
BisI	GCNGC	1 cut(s)	191
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	192
BmsI	GCATC	3 cut(s)	86, 277, 465
BpiI	GAAGAC	2 cut(s)	291, 433
BpmI	CTGGAG	1 cut(s)	458
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	534
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	2 cut(s)	159, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 387
Bse3DI	GCAATG	1 cut(s)	381
BseAI	TCCGGA	2 cut(s)	159, 323
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	2 cut(s)	166, 387
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	160, 324
BslI	CCNNNNNNNGG	2 cut(s)	166, 387
BsmAI	GTCTC	2 cut(s)	280, 434
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp13I	TCCGGA	2 cut(s)	159, 323
Bsp143I	GATC	8 cut(s)	123, 156, 169, 241, 334, 355, 597, 642
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	2 cut(s)	282, 332
BspCNI	CTCAG	1 cut(s)	112
BspEI	TCCGGA	2 cut(s)	159, 323
BspPI	GGATC	4 cut(s)	151, 177, 342, 605
BsrDI	GCAATG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	8 cut(s)	123, 156, 169, 241, 334, 355, 597, 642
BssNI	GRCGYC	1 cut(s)	534
Bst6I	CTCTTC	3 cut(s)	283, 303, 441
BstACI	GRCGYC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	41, 342
BstDEI	CTNAG	3 cut(s)	120, 224, 291
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	8 cut(s)	126, 159, 172, 244, 337, 358, 600, 645
BstMAI	GTCTC	2 cut(s)	280, 434
BstMBI	GATC	8 cut(s)	123, 156, 169, 241, 334, 355, 597, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 514
BstNSI	RCATGY	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	2 cut(s)	291, 433
BstX2I	RGATCY	2 cut(s)	169, 334
BstYI	RGATCY	2 cut(s)	169, 334
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	41, 342
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	508
CseI	GACGC	2 cut(s)	17, 542
Csp6I	GTAC	1 cut(s)	22
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	3 cut(s)	341, 503, 521
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	3 cut(s)	120, 224, 291
DpnI	GATC	8 cut(s)	125, 158, 171, 243, 336, 357, 599, 644
DpnII	GATC	8 cut(s)	123, 156, 169, 241, 334, 355, 597, 642
DrdI	GACNNNNNNGTC	1 cut(s)	568
DseDI	GACNNNNNNGTC	1 cut(s)	568
Eam1104I	CTCTTC	3 cut(s)	283, 303, 441
EarI	CTCTTC	3 cut(s)	283, 303, 441
EciI	GGCGGA	1 cut(s)	347
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	3 cut(s)	344, 506, 524
FaiI	YATR	6 cut(s)	234, 342, 504, 522, 569, 652
FatI	CATG	3 cut(s)	340, 502, 520
FbaI	TGATCA	2 cut(s)	355, 642
Fnu4HI	GCNGC	1 cut(s)	191
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	191
FspAI	RTGCGCAY	1 cut(s)	507
FspBI	CTAG	2 cut(s)	60, 585
FspI	TGCGCA	1 cut(s)	507
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	458
HapII	CCGG	2 cut(s)	160, 324
HgaI	GACGC	2 cut(s)	17, 542
HhaI	GCGC	1 cut(s)	508
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	3 cut(s)	344, 506, 524
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HindIII	AAGCTT	2 cut(s)	515, 656
HinfI	GANTC	4 cut(s)	273, 320, 411, 478
HpaII	CCGG	2 cut(s)	160, 324
Hpy166II	GTNNAC	1 cut(s)	561
Hpy188I	TCNGA	2 cut(s)	241, 246
Hpy188III	TCNNGA	7 cut(s)	60, 132, 154, 160, 173, 324, 640
Hpy8I	GTNNAC	1 cut(s)	561
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	5 cut(s)	11, 100, 253, 509, 547
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	77, 190, 340, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 514
HpyF3I	CTNAG	3 cut(s)	120, 224, 291
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	3 cut(s)	344, 506, 524
HspAI	GCGC	1 cut(s)	506
Kpn2I	TCCGGA	2 cut(s)	159, 323
Ksp22I	TGATCA	2 cut(s)	355, 642
Kzo9I	GATC	8 cut(s)	123, 156, 169, 241, 334, 355, 597, 642
LpnPI	CCDG	5 cut(s)	117, 173, 337, 400, 422
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	3 cut(s)	86, 277, 465
MaeI	CTAG	2 cut(s)	60, 585
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	68, 404
MalI	GATC	8 cut(s)	125, 158, 171, 243, 336, 357, 599, 644
MboI	GATC	8 cut(s)	123, 156, 169, 241, 334, 355, 597, 642
MboII	GAAGA	9 cut(s)	115, 124, 268, 270, 291, 320, 378, 438, 458
MfeI	CAATTG	2 cut(s)	251, 462
MflI	RGATCY	2 cut(s)	169, 334
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	3 cut(s)	251, 263, 462
MlyI	GAGTC	2 cut(s)	282, 487
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	6 cut(s)	91, 169, 356, 381, 442, 506
MroI	TCCGGA	2 cut(s)	159, 323
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	667
MspI	CCGG	2 cut(s)	160, 324
MunI	CAATTG	2 cut(s)	251, 462
MwoI	GCNNNNNNNGC	2 cut(s)	350, 514
NdeII	GATC	8 cut(s)	123, 156, 169, 241, 334, 355, 597, 642
NlaIII	CATG	3 cut(s)	344, 506, 524
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	2 cut(s)	68, 404
NsbI	TGCGCA	1 cut(s)	507
NspI	RCATGY	1 cut(s)	344
PaeI	GCATGC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	320, 411
PkrI	GCNGC	1 cut(s)	192
PleI	GAGTC	2 cut(s)	281, 486
PpsI	GAGTC	2 cut(s)	281, 486
Psp124BI	GAGCTC	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	169, 334
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	667
SatI	GCNGC	1 cut(s)	191
Sau3AI	GATC	8 cut(s)	123, 156, 169, 241, 334, 355, 597, 642
SchI	GAGTC	2 cut(s)	282, 487
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	8 cut(s)	12, 45, 148, 208, 453, 519, 558, 660
SfaNI	GCATC	3 cut(s)	86, 277, 465
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	3 cut(s)	251, 263, 462
SsiI	CCGC	2 cut(s)	282, 332
SspMI	CTAG	2 cut(s)	60, 585
SstI	GAGCTC	1 cut(s)	45
TaiI	ACGT	1 cut(s)	12
TasI	AATT	3 cut(s)	251, 263, 462
TfiI	GAWTC	2 cut(s)	320, 411
Tru1I	TTAA	1 cut(s)	667
Tru9I	TTAA	1 cut(s)	667
TseFI	GTSAC	2 cut(s)	68, 404
TseI	GCWGC	1 cut(s)	190
Tsp45I	GTSAC	2 cut(s)	68, 404
TspDTI	ATGAA	2 cut(s)	491, 509
TspGWI	ACGGA	2 cut(s)	108, 370
XapI	RAATTY	1 cut(s)	263
XbaI	TCTAGA	1 cut(s)	59
XceI	RCATGY	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	2 cut(s)	60, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.