Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010692

Physical Location & Seq

Genomic Coordinates Forward (+)

59103759 .. 59105970

Gene Structure 2212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG373100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGACCTGGAAGCAAGAAGCTTGCAGCCGGGGGCAAAGGCGGTGCTGCTTGCAAAGTTGAGGGAGTACAAATCTGATCTCAATAAGTTGAAGAGGGAGATCAAAAGAATCACATCACCTAATGCTAATGAGATAGCTCGTGATGAGCTTTTGGAGTCTGGGATGGCGGATATGCACGCGGTTTCTTCTGATCAAAGAGAGAGAGTAGCAATGTCAGTTGAGAGATTAAATCAGTCAAGTGACAGAATTACTGAGAGCAGAAGAACCATAATGGAGACCGAAGAGCTTGGTGTCTCCATTCTCCAAGATTTGCATCAACAGCGTGAAACTCTCCTACATTCCCATAAGAAACTTCACGGGGTAGATGATGCCATCGACAAAAGTAAAAAAGTCTTAACTTCCATGTCACGGAGGATGACCAAGCATAAATGGATCGTCGGCTCAGTCATTGGAGCCCTTGTTGTTGCAATCCTATTTGTTATGTATTTTAAGCTCTCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005483 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005802 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

167

Amino Acids

19.05

Weight (kDa)

9.65

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 37	6.2e-09	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	74 - 139	1.2e-23	Snare region anchored in the vesicle membrane C-terminus
Sec20	PF03908	82 - 162	1.9e-06	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26670
fragaria_vesca	FvH4_4g30751 FvH4_4g30751
malus_domestica	MD13G1068500.v1.1 MD16G1067300.v1.1
prunus_persica	Prupe.1G279400_v2.0.a1
pyrus_communis	pycom13g06030 pycom16g05880
rosa_chinensis	RchiOBHm_Chr4g0439151
rosa_laevigata	RLG00000006293
rosa_multiflora	Rmu_sc0002236.1_g000003 Rmu_sc0027506.1_g000004
rosa_rugosa	Rorug04G0316100 Rorug04G0316200
rosa_samantha	Rh4AG367000 Rh4BG378500 Rh4CG392800 Rh4DG373100
rosa_wichuraiana	Rw0G007520 Rw0G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	179
AciI	CCGC	3 cut(s)	41, 167, 179
AclWI	GGATC	1 cut(s)	440
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	5 cut(s)	21, 137, 148, 286, 493
AluI	AGCT	5 cut(s)	21, 137, 148, 286, 493
Alw26I	GTCTC	2 cut(s)	269, 298
AlwI	GGATC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	25, 46
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	457
BauI	CACGAG	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	33, 37
BccI	CCATC	2 cut(s)	157, 380
BciT130I	CCWGG	1 cut(s)	8
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	269, 298
BisI	GCNGC	2 cut(s)	26, 47
BlsI	GCNGC	2 cut(s)	27, 48
Bme1390I	CCNGG	2 cut(s)	8, 30
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	2 cut(s)	8, 30
BmsI	GCATC	2 cut(s)	322, 358
BpuMI	CCSGG	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	168, 420
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	243, 456
BseXI	GCAGC	2 cut(s)	33, 37
Bsh1236I	CGCG	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	269, 298
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	4 cut(s)	76, 99, 190, 432
BspACI	CCGC	3 cut(s)	41, 167, 179
BspCNI	CTCAG	2 cut(s)	244, 455
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	440
BspQI	GCTCTTC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	4 cut(s)	76, 99, 190, 432
BssSI	CACGAG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	8
Bst6I	CTCTTC	2 cut(s)	86, 276
BstC8I	GCNNGC	3 cut(s)	23, 51, 177
BstDEI	CTNAG	2 cut(s)	252, 442
BstF5I	GGATG	2 cut(s)	168, 420
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	4 cut(s)	79, 102, 193, 435
BstMAI	GTCTC	2 cut(s)	269, 298
BstMBI	GATC	4 cut(s)	76, 99, 190, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	6, 28
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	33, 37
BtsCI	GGATG	2 cut(s)	168, 420
Cac8I	GCNNGC	3 cut(s)	23, 51, 177
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	8 cut(s)	21, 28, 137, 148, 286, 441, 455, 493
CviKI_1	RGCY	8 cut(s)	21, 28, 137, 148, 286, 441, 455, 493
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	252, 442
DpnI	GATC	4 cut(s)	78, 101, 192, 434
DpnII	GATC	4 cut(s)	76, 99, 190, 432
Eam1104I	CTCTTC	2 cut(s)	86, 276
EarI	CTCTTC	2 cut(s)	86, 276
EciI	GGCGGA	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	457
FaeI	CATG	1 cut(s)	406
FaiI	YATR	6 cut(s)	173, 269, 345, 404, 426, 482
FatI	CATG	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	26, 47
FokI	GGATG	2 cut(s)	175, 427
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	2 cut(s)	26, 47
GluI	GCNGC	2 cut(s)	26, 47
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	2 cut(s)	108, 155
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	108
Hpy188I	TCNGA	2 cut(s)	76, 190
Hpy188III	TCNNGA	1 cut(s)	140
Hpy99I	CGWCG	1 cut(s)	440
HpyCH4V	TGCA	5 cut(s)	25, 53, 175, 313, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	2 cut(s)	252, 442
Hsp92II	CATG	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	76, 99, 190, 432
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	452
LpnPI	CCDG	3 cut(s)	20, 42, 144
Lsp1109I	GCAGC	2 cut(s)	33, 37
LweI	GCATC	2 cut(s)	322, 358
MaeIII	GTNAC	2 cut(s)	239, 405
MalI	GATC	4 cut(s)	78, 101, 192, 434
MboI	GATC	4 cut(s)	76, 99, 190, 432
MboII	GAAGA	4 cut(s)	103, 177, 273, 293
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	3 cut(s)	54, 87, 405
MseI	TTAA	4 cut(s)	227, 395, 489, 502
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	8, 30
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	319
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	4 cut(s)	76, 99, 190, 432
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	2 cut(s)	239, 405
PciSI	GCTCTTC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	27, 48
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	4 cut(s)	227, 395, 489, 502
SatI	GCNGC	2 cut(s)	26, 47
Sau3AI	GATC	4 cut(s)	76, 99, 190, 432
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	8, 30
SduI	GDGCHC	1 cut(s)	457
SetI	ASST	7 cut(s)	9, 23, 121, 139, 150, 288, 495
SfaNI	GCATC	2 cut(s)	322, 358
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	3 cut(s)	41, 167, 179
StyD4I	CCNGG	2 cut(s)	6, 28
TaqI	TCGA	1 cut(s)	375
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	1 cut(s)	246
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	4 cut(s)	227, 395, 489, 502
Tru9I	TTAA	4 cut(s)	227, 395, 489, 502
TseFI	GTSAC	2 cut(s)	239, 405
TseI	GCWGC	2 cut(s)	25, 46
Tsp45I	GTSAC	2 cut(s)	239, 405
TspGWI	ACGGA	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.