Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010692

Physical Location & Seq

Genomic Coordinates Forward (+)

30230226 .. 30232207

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30751.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGTGAGGTCTTCGAAGGCTACGAGCGTCAGTACTGTGAGCTCTCCGCCAACCTCTCCCGGAAATGTAACGCCGCCGCTCTTCTTCCTGACCAAGGGCAGAAGCAGCAGAGGTTTTCTGAGATTAAAGCTGGATTGGATGATGCCGATGGTTTGATTCGGAAAATGGACCTGGAAGCAAGAAGCTTGCAGCCGGGGGCGAAGGCGGCGCTGCTTGCGAAGTTGAGGGAGTACAAGTCTGATCTGAATAAGTTGAAGAGGGAGATCAAAAGAATTACATCACCGAATGCTAATGAGATTGCTCGGGATGAGCTTTTGGAGTCCGGAATGGCGGATATGCACGCGGTTTCTTCTGATCAAAGAGAGAGAGTGGCAATGTCAGTTGAGAGACTAGATCAATCAAGTGACAGAATTTCTGAGAGTAGAAGAACCATACTGGAGACCGAAGAGCTTGGTGTTTCCATTCTCCAAGATTTGCAACAACAGCGTGAAACTCTCCTACATTCCCATAAGAAACTTCACGGGGTAGATGATGCCATAGACAAGAGTAAAAAAGTCTTAACTTCCATGTCGCGGAGGATGACCAAGCATAAGTGGATAGTCGGCTCAGTTATTGGAGCTCTTGCTGTTGCAATCCTATTTGTTCTATATTTTAAGTTTTCGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005483 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005802 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

223

Amino Acids

25.13

Weight (kDa)

8.78

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 37	2.7e-09	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	74 - 139	9.9e-23	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26670
fragaria_vesca	FvH4_4g30751 FvH4_4g30751
malus_domestica	MD13G1068500.v1.1 MD16G1067300.v1.1
prunus_persica	Prupe.1G279400_v2.0.a1
pyrus_communis	pycom13g06030 pycom16g05880
rosa_chinensis	RchiOBHm_Chr4g0439151
rosa_laevigata	RLG00000006293
rosa_multiflora	Rmu_sc0002236.1_g000003 Rmu_sc0027506.1_g000004
rosa_rugosa	Rorug04G0316100 Rorug04G0316200
rosa_samantha	Rh4AG367000 Rh4BG378500 Rh4CG392800 Rh4DG373100
rosa_wichuraiana	Rw0G007520 Rw0G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	80
AccII	CGCG	2 cut(s)	344, 574
AccIII	TCCGGA	1 cut(s)	323
AciI	CCGC	7 cut(s)	48, 75, 78, 206, 332, 344, 574
AcsI	RAATTY	1 cut(s)	411
AfaI	GTAC	2 cut(s)	35, 233
AfiI	CCNNNNNNNGG	2 cut(s)	95, 573
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	6 cut(s)	43, 131, 186, 313, 451, 620
AluI	AGCT	6 cut(s)	43, 131, 186, 313, 451, 620
Alw21I	GWGCWC	2 cut(s)	45, 622
Alw26I	GTCTC	2 cut(s)	382, 434
Ama87I	CYCGRG	1 cut(s)	303
Aor13HI	TCCGGA	1 cut(s)	323
ApeKI	GCWGC	3 cut(s)	106, 190, 211
ApoI	RAATTY	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	2 cut(s)	61, 195
AsuHPI	GGTGA	1 cut(s)	273
AsuII	TTCGAA	1 cut(s)	15
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	169
BanII	GRGCYC	2 cut(s)	45, 622
BbsI	GAAGAC	1 cut(s)	4
Bbv12I	GWGCWC	2 cut(s)	45, 622
BbvI	GCAGC	3 cut(s)	118, 198, 202
BccI	CCATC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	173
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	2 cut(s)	61, 195
BcoDI	GTCTC	2 cut(s)	382, 434
BfaI	CTAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	6 cut(s)	75, 78, 107, 191, 207, 212
BlsI	GCNGC	6 cut(s)	76, 79, 108, 192, 208, 213
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	3 cut(s)	61, 173, 195
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	3 cut(s)	61, 173, 195
BmsI	GCATC	2 cut(s)	133, 523
BpiI	GAAGAC	1 cut(s)	4
BpmI	CTGGAG	1 cut(s)	458
Bpu14I	TTCGAA	1 cut(s)	15
BpuMI	CCSGG	2 cut(s)	61, 195
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	94, 194
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 573
Bse1I	ACTGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	94, 194
BseGI	GGATG	3 cut(s)	145, 313, 585
BseLI	CCNNNNNNNGG	2 cut(s)	95, 573
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	111, 408, 621
BseNI	ACTGG	1 cut(s)	441
BseXI	GCAGC	3 cut(s)	118, 198, 202
Bsh1236I	CGCG	2 cut(s)	344, 574
BsiHKAI	GWGCWC	2 cut(s)	45, 622
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	3 cut(s)	61, 194, 324
BslI	CCNNNNNNNGG	2 cut(s)	95, 573
BsmAI	GTCTC	2 cut(s)	382, 434
BsmI	GAATGC	1 cut(s)	292
Bso31I	GGTCTC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	45, 622
Bsp13I	TCCGGA	1 cut(s)	323
Bsp143I	GATC	4 cut(s)	241, 264, 355, 394
BspACI	CCGC	7 cut(s)	48, 75, 78, 206, 332, 344, 574
BspCNI	CTCAG	3 cut(s)	112, 409, 620
BspEI	TCCGGA	1 cut(s)	323
BspFNI	CGCG	2 cut(s)	344, 574
BspQI	GCTCTTC	2 cut(s)	87, 441
BspT104I	TTCGAA	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	434
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	94, 194
BssMI	GATC	4 cut(s)	241, 264, 355, 394
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	3 cut(s)	87, 251, 441
BstBI	TTCGAA	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	188, 216, 342
BstDEI	CTNAG	3 cut(s)	120, 417, 607
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	145, 313, 585
BstFNI	CGCG	2 cut(s)	344, 574
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	4 cut(s)	244, 267, 358, 397
BstMAI	GTCTC	2 cut(s)	382, 434
BstMBI	GATC	4 cut(s)	241, 264, 355, 394
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 206, 215, 484
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	3 cut(s)	59, 171, 193
BstUI	CGCG	2 cut(s)	344, 574
BstV1I	GCAGC	3 cut(s)	118, 198, 202
BstV2I	GAAGAC	1 cut(s)	4
BtsCI	GGATG	3 cut(s)	145, 313, 585
Cac8I	GCNNGC	3 cut(s)	188, 216, 342
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	169
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	34, 232
CviAII	CATG	1 cut(s)	568
CviJI	RGCY	9 cut(s)	21, 43, 131, 186, 193, 313, 451, 606, 620
CviKI_1	RGCY	9 cut(s)	21, 43, 131, 186, 193, 313, 451, 606, 620
CviQI	GTAC	2 cut(s)	34, 232
DdeI	CTNAG	3 cut(s)	120, 417, 607
DpnI	GATC	4 cut(s)	243, 266, 357, 396
DpnII	GATC	4 cut(s)	241, 264, 355, 394
Eam1104I	CTCTTC	3 cut(s)	87, 251, 441
EarI	CTCTTC	3 cut(s)	87, 251, 441
EciI	GGCGGA	2 cut(s)	37, 347
Ecl136II	GAGCTC	2 cut(s)	43, 620
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	45, 622
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	2 cut(s)	43, 620
Eco88I	CYCGRG	1 cut(s)	303
EcoICRI	GAGCTC	2 cut(s)	43, 620
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	2 cut(s)	45, 622
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	571
FaiI	YATR	7 cut(s)	338, 434, 510, 539, 569, 591, 649
FatI	CATG	1 cut(s)	567
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	6 cut(s)	75, 78, 107, 191, 207, 212
FokI	GGATG	3 cut(s)	152, 320, 592
FriOI	GRGCYC	2 cut(s)	45, 622
Fsp4HI	GCNGC	6 cut(s)	75, 78, 107, 191, 207, 212
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	6 cut(s)	75, 78, 107, 191, 207, 212
GsuI	CTGGAG	1 cut(s)	458
HaeII	RGCGCY	1 cut(s)	212
HapII	CCGG	3 cut(s)	61, 194, 324
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	571
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	2 cut(s)	157, 320
HpaII	CCGG	3 cut(s)	61, 194, 324
HphI	GGTGA	1 cut(s)	273
Hpy188I	TCNGA	6 cut(s)	121, 162, 241, 246, 355, 418
Hpy188III	TCNNGA	3 cut(s)	89, 305, 324
HpyAV	CCTTC	2 cut(s)	11, 196
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	4 cut(s)	190, 340, 478, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 206, 215, 484
HpyF3I	CTNAG	3 cut(s)	120, 417, 607
Hsp92II	CATG	1 cut(s)	571
HspAI	GCGC	1 cut(s)	209
Kpn2I	TCCGGA	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	241, 264, 355, 394
LguI	GCTCTTC	2 cut(s)	87, 441
LmnI	GCTCC	1 cut(s)	617
LpnPI	CCDG	8 cut(s)	74, 102, 117, 158, 185, 207, 337, 422
Lsp1109I	GCAGC	3 cut(s)	118, 198, 202
LweI	GCATC	2 cut(s)	133, 523
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	68, 404
MalI	GATC	4 cut(s)	243, 266, 357, 396
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	4 cut(s)	241, 264, 355, 394
MboII	GAAGA	7 cut(s)	4, 74, 77, 268, 342, 438, 458
MhlI	GDGCHC	2 cut(s)	45, 622
MluCI	AATT	2 cut(s)	273, 411
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	5 cut(s)	65, 105, 219, 252, 570
MroI	TCCGGA	1 cut(s)	323
MseI	TTAA	4 cut(s)	126, 560, 654, 667
MspI	CCGG	3 cut(s)	61, 194, 324
MspR9I	CCNGG	3 cut(s)	61, 173, 195
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	344, 574
MwoI	GCNNNNNNNGC	4 cut(s)	106, 206, 215, 484
NciI	CCSGG	2 cut(s)	61, 195
NdeII	GATC	4 cut(s)	241, 264, 355, 394
NlaIII	CATG	1 cut(s)	571
NmuCI	GTSAC	1 cut(s)	404
NspV	TTCGAA	1 cut(s)	15
PciSI	GCTCTTC	2 cut(s)	87, 441
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	157
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	6 cut(s)	76, 79, 108, 192, 208, 213
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp124BI	GAGCTC	2 cut(s)	45, 622
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	169
RsaI	GTAC	2 cut(s)	35, 233
RsaNI	GTAC	2 cut(s)	34, 232
SacI	GAGCTC	2 cut(s)	45, 622
SapI	GCTCTTC	2 cut(s)	87, 441
SaqAI	TTAA	4 cut(s)	126, 560, 654, 667
SatI	GCNGC	6 cut(s)	75, 78, 107, 191, 207, 212
Sau3AI	GATC	4 cut(s)	241, 264, 355, 394
Sau96I	GGNCC	1 cut(s)	169
ScaI	AGTACT	1 cut(s)	35
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	61, 173, 195
SduI	GDGCHC	2 cut(s)	45, 622
SfaNI	GCATC	2 cut(s)	133, 523
SfuI	TTCGAA	1 cut(s)	15
SinI	GGWCC	1 cut(s)	169
Sse9I	AATT	2 cut(s)	273, 411
SsiI	CCGC	7 cut(s)	48, 75, 78, 206, 332, 344, 574
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	2 cut(s)	45, 622
StyD4I	CCNGG	3 cut(s)	59, 171, 193
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	15
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	2 cut(s)	273, 411
TatI	WGTACW	2 cut(s)	33, 231
TauI	GCSGC	3 cut(s)	77, 80, 209
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	4 cut(s)	126, 560, 654, 667
Tru9I	TTAA	4 cut(s)	126, 560, 654, 667
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	3 cut(s)	106, 190, 211
Tsp45I	GTSAC	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	411
XspI	CTAG	1 cut(s)	392
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.