RLG00000006293

Vesicle transport V-snare

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
6056207 .. 6059641
3435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006293

Sequence Viewer

Length: 1176 bp
ATGAGTGAGGTCTTCGAAGGCTACGAACGTCAGTACTGTGAGCTCTCCGCCAACCTTTCCCGGAAATGTAACGCCGCCGCTCTTCTTCCTGACCAAGGGCAGAAGCAGCAGAAGTTTTCTGAGATTAGAGCTGGATTGGATGATGCTGATGGTTTGATTCGGAAAATGGACCTGGAAGCAAGAAGCTTGCAGCCGGGGGCAAAGGCGGTGCTGCTTGCAAAGTTAAGGGAGTACAAATCTGATCTCAATAAGTTGAAGAGGGAAATCAAAAGAATCACATCACCTAATGCTAATGAGATAGCGCGTGATGAGCTTTTGGAGTCTGGGATGGCGGATATGCACGCGGTTTCTTCTGATCAAAGAGAGAGAGTGGCAATGTCAGTTGAGAGATTAAATCAGTCAAGTGACAGAATTACTGAGAGCAGAAGAACCATAATGGAGACCGAAGAGCTTGGTGTCTCCATTCTCCAAGATTTGCATCAACAGCGTGAAACTCTCCTACATTCCCATAAGAAACTTCACGGGGTAGATGATGCCATCGACAAAAGTAAAAAGGTCCTAACTTCCATGTCACGGAGGATGACCAAGCATAAATGGATCGTCGGCTCAGTCATTGGAGCTCTTGTTGTTGCAATCCTATTTGTTATACTTCCAGTTAACCTTTTGCGGGAGACTGTTTGGGATCCTTCATACGAGTGTCGTGGGGAGCTCGGCACTTGGCATGACCAGTTCTTAGGTTTTAGTCCCGATTTCGATTGTGCAAAGGAGTACAAAACCACCGTCCAACAAGAGTTCGAGCAAGACTTCAGAAATGCGCACCCAAATAATTACAATAGCTTCAGAGTTGAGTGTGAGGCTATGAACTCGTTAGCGGTCACCCTGGACTTGAAGGTTACTGCGGAATCTAATTCCAACGGCATTGCGGAGTTGAAGACATGTGGGGGGTGGTTCGTTGACCCAAAGTACAGATGCCTAGTATATTTGGACGACGGTACCTGGAATGGGTTGTTCCTGCCATTGCTGCCGGAGTACGACTGTGTCGAAAAGAACCACCACTGCTGGTGGAAGCTGCATGACGGGTATTTACTTCGCCACTCGCCCAAGCGAAACAGCTGGCTTCGTCAAAATTATGGCCTCGGCTGGGTTCCGCAACCCACAGCTGAAGACATAAAATAA

Protein Analysis

392

Amino Acids

44.85

Weight (kDa)

6.21

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
V-SNARE PF05008 1 - 92 2.6e-28 Vesicle transport v-SNARE protein N-terminus
V-SNARE_C PF12352 129 - 194 6e-23 Snare region anchored in the vesicle membrane C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 816
Acc65I GGTACC 1 cut(s) 992
AccB1I GGYRCC 1 cut(s) 992
AccBSI CCGCTC 1 cut(s) 80
AccII CGCG 2 cut(s) 304, 344
AclWI GGATC 3 cut(s) 605, 677, 690
AcuI CTGAAG 2 cut(s) 790, 823
AfaI GTAC 6 cut(s) 35, 233, 770, 965, 994, 1031
AfiI CCNNNNNNNGG 5 cut(s) 95, 573, 667, 1002, 1141
AflIII ACRYGT 1 cut(s) 935
AgsI TTSAA 3 cut(s) 256, 889, 931
AjnI CCWGG 3 cut(s) 171, 879, 995
Alw21I GWGCWC 3 cut(s) 45, 622, 711
Alw26I GTCTC 3 cut(s) 434, 463, 665
AlwI GGATC 3 cut(s) 605, 677, 690
AoxI GGCC 1 cut(s) 1132
ApeKI GCWGC 5 cut(s) 106, 190, 211, 1021, 1069
ArsI GACNNNNNNTTYG 2 cut(s) 765, 797
Asp718I GGTACC 1 cut(s) 992
AspLEI GCGC 2 cut(s) 304, 817
AspS9I GGNCC 2 cut(s) 169, 556
AsuC2I CCSGG 2 cut(s) 61, 195
AsuHPI GGTGA 2 cut(s) 273, 868
AsuII TTCGAA 1 cut(s) 15
AvaII GGWCC 2 cut(s) 169, 556
BaeI ACNNNNGTAYC 2 cut(s) 976, 1009
BamHI GGATCC 1 cut(s) 682
BanI GGYRCC 1 cut(s) 992
BanII GRGCYC 3 cut(s) 45, 622, 711
BbsI GAAGAC 3 cut(s) 4, 938, 1170
Bbv12I GWGCWC 3 cut(s) 45, 622, 711
BbvI GCAGC 5 cut(s) 118, 198, 202, 1008, 1056
BccI CCATC 3 cut(s) 143, 322, 545
BceAI ACGGC 1 cut(s) 931
BciT130I CCWGG 3 cut(s) 173, 881, 997
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 2 cut(s) 61, 195
BcoDI GTCTC 3 cut(s) 434, 463, 665
BfaI CTAG 1 cut(s) 974
BisI GCNGC 7 cut(s) 75, 78, 107, 191, 212, 1022, 1070
BlsI GCNGC 7 cut(s) 76, 79, 108, 192, 213, 1023, 1071
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 5 cut(s) 61, 173, 195, 881, 997
Bme18I GGWCC 2 cut(s) 169, 556
BmgT120I GGNCC 2 cut(s) 169, 556
BmiI GGNNCC 3 cut(s) 684, 994, 1146
BmrFI CCNGG 5 cut(s) 61, 173, 195, 881, 997
BmsI GCATC 4 cut(s) 133, 487, 523, 959
BpiI GAAGAC 3 cut(s) 4, 938, 1170
Bpu14I TTCGAA 1 cut(s) 15
BpuMI CCSGG 2 cut(s) 61, 195
BsaBI GATNNNNATC 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 4 cut(s) 94, 194, 879, 1135
BsaXI ACNNNNNCTCC 2 cut(s) 609, 639
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 573, 667, 1002, 1141
Bse1I ACTGG 2 cut(s) 653, 727
Bse3DI GCAATG 3 cut(s) 381, 918, 1016
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 3 cut(s) 173, 881, 997
BseDI CCNNGG 4 cut(s) 94, 194, 879, 1135
BseGI GGATG 3 cut(s) 145, 333, 585
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 5 cut(s) 95, 573, 667, 1002, 1141
BseMI GCAATG 3 cut(s) 381, 918, 1016
BseMII CTCAG 3 cut(s) 111, 408, 621
BseNI ACTGG 2 cut(s) 653, 727
BseXI GCAGC 5 cut(s) 118, 198, 202, 1008, 1056
BseYI CCCAGC 1 cut(s) 1140
Bsh1236I CGCG 2 cut(s) 304, 344
BshFI GGCC 1 cut(s) 1134
BshNI GGYRCC 1 cut(s) 992
BsiHKAI GWGCWC 3 cut(s) 45, 622, 711
BsiSI CCGG 3 cut(s) 61, 194, 1025
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 5 cut(s) 95, 573, 667, 1002, 1141
BsmAI GTCTC 3 cut(s) 434, 463, 665
BsmFI GGGAC 1 cut(s) 729
BsnI GGCC 1 cut(s) 1134
Bso31I GGTCTC 1 cut(s) 434
Bsp119I TTCGAA 1 cut(s) 15
Bsp1286I GDGCHC 3 cut(s) 45, 622, 711
Bsp143I GATC 4 cut(s) 241, 355, 597, 682
BspANI GGCC 1 cut(s) 1134
BspCNI CTCAG 3 cut(s) 112, 409, 620
BspFNI CGCG 2 cut(s) 304, 344
BspLI GGNNCC 3 cut(s) 684, 994, 1146
BspPI GGATC 3 cut(s) 605, 677, 690
BspQI GCTCTTC 2 cut(s) 87, 441
BspT104I TTCGAA 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 992
BspTNI GGTCTC 1 cut(s) 434
BsrBI CCGCTC 1 cut(s) 80
BsrDI GCAATG 3 cut(s) 381, 918, 1016
BsrI ACTGG 2 cut(s) 653, 727
BssECI CCNNGG 4 cut(s) 94, 194, 879, 1135
BssMI GATC 4 cut(s) 241, 355, 597, 682
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 3 cut(s) 173, 881, 997
Bst4CI ACNGT 5 cut(s) 38, 676, 781, 992, 1037
Bst6I CTCTTC 3 cut(s) 87, 251, 441
BstBI TTCGAA 1 cut(s) 15
BstC8I GCNNGC 4 cut(s) 188, 216, 342, 1115
BstDEI CTNAG 4 cut(s) 120, 417, 607, 733
BstEII GGTNACC 1 cut(s) 874
BstENI CCTNNNNNAGG 1 cut(s) 93
BstF5I GGATG 3 cut(s) 145, 333, 585
BstFNI CGCG 2 cut(s) 304, 344
BstHHI GCGC 2 cut(s) 304, 817
BstKTI GATC 4 cut(s) 244, 358, 600, 685
BstMAI GTCTC 3 cut(s) 434, 463, 665
BstMBI GATC 4 cut(s) 241, 355, 597, 682
BstMWI GCNNNNNNNGC 4 cut(s) 106, 310, 484, 1021
BstNI CCWGG 3 cut(s) 173, 881, 997
BstNSI RCATGY 1 cut(s) 939
BstPI GGTNACC 1 cut(s) 874
BstSCI CCNGG 5 cut(s) 59, 171, 193, 879, 995
BstUI CGCG 2 cut(s) 304, 344
BstV1I GCAGC 5 cut(s) 118, 198, 202, 1008, 1056
BstV2I GAAGAC 3 cut(s) 4, 938, 1170
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BsuRI GGCC 1 cut(s) 1134
BtsCI GGATG 3 cut(s) 145, 333, 585
BtsI GCAGTG 1 cut(s) 1054
BtsIMutI CAGTG 1 cut(s) 1054
Cac8I GCNNGC 4 cut(s) 188, 216, 342, 1115
CfoI GCGC 2 cut(s) 304, 817
Cfr13I GGNCC 2 cut(s) 169, 556
Csp6I GTAC 6 cut(s) 34, 232, 769, 964, 993, 1030
CviAII CATG 4 cut(s) 568, 722, 936, 1073
CviQI GTAC 6 cut(s) 34, 232, 769, 964, 993, 1030
DdeI CTNAG 4 cut(s) 120, 417, 607, 733
DpnI GATC 4 cut(s) 243, 357, 599, 684
DpnII GATC 4 cut(s) 241, 355, 597, 682
Eam1104I CTCTTC 3 cut(s) 87, 251, 441
EarI CTCTTC 3 cut(s) 87, 251, 441
EciI GGCGGA 2 cut(s) 37, 347
Ecl136II GAGCTC 3 cut(s) 43, 620, 709
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 3 cut(s) 45, 622, 711
Eco31I GGTCTC 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 169, 556
Eco53kI GAGCTC 3 cut(s) 43, 620, 709
Eco57I CTGAAG 2 cut(s) 790, 823
Eco91I GGTNACC 1 cut(s) 874
EcoICRI GAGCTC 3 cut(s) 43, 620, 709
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 556
EcoO65I GGTNACC 1 cut(s) 874
EcoRII CCWGG 3 cut(s) 171, 879, 995
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 3 cut(s) 45, 622, 711
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 4 cut(s) 571, 725, 939, 1076
FaqI GGGAC 1 cut(s) 729
FatI CATG 4 cut(s) 567, 721, 935, 1072
FauI CCCGC 1 cut(s) 660
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 7 cut(s) 75, 78, 107, 191, 212, 1022, 1070
FokI GGATG 3 cut(s) 152, 340, 592
FriOI GRGCYC 3 cut(s) 45, 622, 711
Fsp4HI GCNGC 7 cut(s) 75, 78, 107, 191, 212, 1022, 1070
FspAI RTGCGCAY 1 cut(s) 816
FspBI CTAG 1 cut(s) 974
FspI TGCGCA 1 cut(s) 816
GlaI GCGC 2 cut(s) 303, 816
GluI GCNGC 7 cut(s) 75, 78, 107, 191, 212, 1022, 1070
GsaI CCCAGC 1 cut(s) 1144
HaeIII GGCC 1 cut(s) 1134
HapII CCGG 3 cut(s) 61, 194, 1025
HhaI GCGC 2 cut(s) 304, 817
Hin1II CATG 4 cut(s) 571, 725, 939, 1076
Hin6I GCGC 2 cut(s) 302, 815
HinP1I GCGC 2 cut(s) 302, 815
HincII GTYRAC 2 cut(s) 658, 955
HindII GTYRAC 2 cut(s) 658, 955
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 4 cut(s) 157, 273, 320, 902
HpaI GTTAAC 1 cut(s) 658
HpaII CCGG 3 cut(s) 61, 194, 1025
HphI GGTGA 2 cut(s) 273, 868
Hpy166II GTNNAC 2 cut(s) 658, 955
Hpy188I TCNGA 6 cut(s) 121, 162, 241, 355, 809, 842
Hpy188III TCNNGA 2 cut(s) 89, 746
Hpy8I GTNNAC 2 cut(s) 658, 955
Hpy99I CGWCG 2 cut(s) 605, 992
HpyAV CCTTC 3 cut(s) 11, 696, 883
HpyCH4III ACNGT 5 cut(s) 38, 676, 781, 992, 1037
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 7 cut(s) 190, 218, 340, 478, 632, 761, 1072
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 310, 484, 1021
HpyF3I CTNAG 4 cut(s) 120, 417, 607, 733
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 4 cut(s) 571, 725, 939, 1076
HspAI GCGC 2 cut(s) 302, 815
KpnI GGTACC 1 cut(s) 996
Ksp22I TGATCA 1 cut(s) 355
KspAI GTTAAC 1 cut(s) 658
Kzo9I GATC 4 cut(s) 241, 355, 597, 682
LguI GCTCTTC 2 cut(s) 87, 441
LmnI GCTCC 2 cut(s) 617, 706
Lsp1109I GCAGC 5 cut(s) 118, 198, 202, 1008, 1056
LweI GCATC 4 cut(s) 133, 487, 523, 959
MaeI CTAG 1 cut(s) 974
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 5 cut(s) 68, 404, 570, 874, 892
MalI GATC 4 cut(s) 243, 357, 599, 684
MbiI CCGCTC 1 cut(s) 80
MboI GATC 4 cut(s) 241, 355, 597, 682
MboII GAAGA 9 cut(s) 4, 74, 77, 268, 342, 438, 458, 943, 1175
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 3 cut(s) 45, 622, 711
MluCI AATT 4 cut(s) 411, 826, 907, 1126
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 2 cut(s) 808, 936
MnlI CCTC 4 cut(s) 252, 570, 847, 1145
MseI TTAA 3 cut(s) 224, 392, 657
MslI CAYNNNNRTG 1 cut(s) 694
MspA1I CMGCKG 2 cut(s) 1113, 1160
MspI CCGG 3 cut(s) 61, 194, 1025
MspR9I CCNGG 5 cut(s) 61, 173, 195, 881, 997
MvaI CCWGG 3 cut(s) 173, 881, 997
MvnI CGCG 2 cut(s) 304, 344
MwoI GCNNNNNNNGC 4 cut(s) 106, 310, 484, 1021
NciI CCSGG 2 cut(s) 61, 195
NdeII GATC 4 cut(s) 241, 355, 597, 682
NlaIII CATG 4 cut(s) 571, 725, 939, 1076
NlaIV GGNNCC 3 cut(s) 684, 994, 1146
NmeAIII GCCGAG 2 cut(s) 690, 1116
NmuCI GTSAC 3 cut(s) 404, 570, 874
NsbI TGCGCA 1 cut(s) 816
NspI RCATGY 1 cut(s) 939
NspV TTCGAA 1 cut(s) 15
PciI ACATGT 1 cut(s) 935
PciSI GCTCTTC 2 cut(s) 87, 441
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 1038
PfeI GAWTC 3 cut(s) 157, 273, 902
PflFI GACNNNGTC 1 cut(s) 1037
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 7 cut(s) 76, 79, 108, 192, 213, 1023, 1071
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PpuMI RGGWCCY 1 cut(s) 556
PscI ACATGT 1 cut(s) 935
Psp124BI GAGCTC 3 cut(s) 45, 622, 711
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 3 cut(s) 171, 879, 995
PspEI GGTNACC 1 cut(s) 874
PspFI CCCAGC 1 cut(s) 1140
PspGI CCWGG 3 cut(s) 171, 879, 995
PspN4I GGNNCC 3 cut(s) 684, 994, 1146
PspPI GGNCC 2 cut(s) 169, 556
PspPPI RGGWCCY 1 cut(s) 556
PsuI RGATCY 1 cut(s) 682
PsyI GACNNNGTC 1 cut(s) 1037
PvuII CAGCTG 2 cut(s) 1113, 1160
RsaI GTAC 6 cut(s) 35, 233, 770, 965, 994, 1031
RsaNI GTAC 6 cut(s) 34, 232, 769, 964, 993, 1030
RseI CAYNNNNRTG 1 cut(s) 694
SacI GAGCTC 3 cut(s) 45, 622, 711
SapI GCTCTTC 2 cut(s) 87, 441
SaqAI TTAA 3 cut(s) 224, 392, 657
SatI GCNGC 7 cut(s) 75, 78, 107, 191, 212, 1022, 1070
Sau3AI GATC 4 cut(s) 241, 355, 597, 682
Sau96I GGNCC 2 cut(s) 169, 556
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 5 cut(s) 61, 173, 195, 881, 997
SduI GDGCHC 3 cut(s) 45, 622, 711
SfaNI GCATC 4 cut(s) 133, 487, 523, 959
SfuI TTCGAA 1 cut(s) 15
SinI GGWCC 2 cut(s) 169, 556
SmiMI CAYNNNNRTG 1 cut(s) 694
Sse9I AATT 4 cut(s) 411, 826, 907, 1126
SspMI CTAG 1 cut(s) 974
SstI GAGCTC 3 cut(s) 45, 622, 711
StyD4I CCNGG 5 cut(s) 59, 171, 193, 879, 995
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 5 cut(s) 38, 676, 781, 992, 1037
TaiI ACGT 1 cut(s) 31
TaqI TCGA 5 cut(s) 15, 540, 753, 795, 1041
TaqII GACCGA 1 cut(s) 458
TasI AATT 4 cut(s) 411, 826, 907, 1126
TatI WGTACW 4 cut(s) 33, 231, 768, 963
TauI GCSGC 2 cut(s) 77, 80
TfiI GAWTC 3 cut(s) 157, 273, 902
Tru1I TTAA 3 cut(s) 224, 392, 657
Tru9I TTAA 3 cut(s) 224, 392, 657
TscAI CASTG 1 cut(s) 1061
TseFI GTSAC 3 cut(s) 404, 570, 874
TseI GCWGC 5 cut(s) 106, 190, 211, 1021, 1069
Tsp45I GTSAC 3 cut(s) 404, 570, 874
TspDTI ATGAA 2 cut(s) 678, 875
TspGWI ACGGA 1 cut(s) 589
TspRI CASTG 1 cut(s) 1061
Tth111I GACNNNGTC 1 cut(s) 1037
VpaK11BI GGWCC 2 cut(s) 169, 556
XagI CCTNNNNNAGG 1 cut(s) 93
XceI RCATGY 1 cut(s) 939
XspI CTAG 1 cut(s) 974
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.