Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010692

Physical Location & Seq

Genomic Coordinates Reverse (-)

49060392 .. 49066757

Gene Structure 6366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0316200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3930 bp

ATGGTCGTTGGTGGATCCAATTGTATTGGGTGGAACAATTGCATAGAAATCGAAGAAACCCTAGGGGGTGTGATGGGCAAGGATGAGAGTAGCAAAGAGGTTGGGGATGTTGAAGAAGGTGAAATTTCCGATTCGACTTCAGTGGAGGAGATCAGTGAGGAGGATTTTGTTAAGCAGGAATTGAAGGTTGAGCCGAAATCCAATGGCGGAGGAGGAGATGCTGGTAGGGTTTGGACGATGCGGGACATCTACAACTACCCGGGGTTTCGCGGCTACGGGTCCGGTCTGGTTAACCTGGCTTGGGCTCAGGCCGTGCAGAATAAACCTCTCAATGAGCTCTTTGTGATGGATGTTGATTCCGAAGAGAAATCGAAGCAGCAGCAGCAGCAGCGATCGTCGTCTTCGCTGCCGGTGAGTTCCGGCAATGCGAAGGGAGAGGAGAGAGTGGTGATTATTGACAGTGGTGATGAGATGGATGTTGAGAAGGAGGACGGGGAGTTGGAGGAGGGGGAGATTGATTTGGATTCGGAGTCTGCCGATAACGAAAAGGCAGCTGGTGCTGGTGCTGGTGCTGATATGAATGTTGATAGTTCAGAGGGTGGTGTGAAGAATGAGGTGTGGGAGAAGCGAGTGAACTTGCTAAGGGAAGCATTGGAGTCTCTGACTATTACTGAGGCCGAGAAGTCATTTAGAGATGTATGTCTCCGGTTTCTTGGCAGTTTGGAAAGCTTGCGAGGAGTGCTTTCGGATATAACTGTGTCTACTAAAGAAGCTCTTGTTCAGCAGTTGTTCACTGCCGTACAAGCTATTAGCTCGGTTTTCTGCTCGATGAGCCCTGACCGGAAGGAGCAGAATAAAGATGTTCTAGCAAGGATACTTTCTTCTTCAAAGAGTGATCCTTCTCCTTTTTCCGCTGAGCAGCTAAAAGAGATAAAGGTGATGATATCCTCTATGGAATCCCCTGCTGTTTTCCCTCAAACTAAAGCAGGTACTAAGGGCAACGAGATACAGTCTATCAATGGGGTTAACAATATGGATTCAGATACTTCAGTTGCAAATGCCAGTCATGTGTTCACTTATTCAGCTAATAATGCTTCAGATTTTGTACCTGTATCTGTGGTTCATAGCAATCCTAATATATCATCCGAAGTTCCAAGATCAGGAACATCTAGTTTTAAGGGTAGAGGACTCATGCTACCCCTTTTAGACCTTCACATGGATCATGATGAAGATAGCCTTCCATCTCCTACACGAGAACCACCAGCAGGTTTTCCTGTCCAGAAACTATCGGTTGTTGCTGATGGGATGGTAAAAAAATCAGGGTTGGAGACAACTCGGGTGGCCCTAGATGTAGAAGGTTCAAAAATGCATGGTTATGAAACTGAGGCTCTTAAGGCTGTTTCTAGCTATCAACAAAAGTTTAGTCGGAATTCTTTTTTGACGAGTGAACTTCCAAGCCCAACTCCTTCAGAAGAGGGTGATAATGGGGATGATGATACGATTGGGGAGGTTTCTAGTTCTTCTGCGCCTAGTAATGTGAGAACTCCACGTCCCCCCATTTTGGGTCGTCAAGTTGTTTCTTCTCCTCCTCCTACCATCGTCACGGCTAGCTCTGACTTGCAAGGACCAATTACTGCAAAAAGTGCAGCCTCTGTGAGTTTGGTGTCTAATATGCCTGTTAAATCTTCAGCTAAGAGTAGAGACCCTAGGCTTCGATTTGCCAATTCTGATGTTGGTGCTTTGACCCTTAACCAACAATCCTCAATTGCGGTGCATAATGCACCTAAAGTGGATTCTGTTATCACAGTAAGCTCAAGAAAGCATAAATCCCCTGAGGAGTCTAATTTTGATGGTCCTGAATCAAAAAGACAAAGGGGTGCAAACTCAGTGGTTGGTAGGGGTGCAAAAACTTCTTTCGGAAGTGGTGGCTGGTTGGAGGACGTCAGTAGTGTTGGACCTCATTTAATTAACAGGAACCAGACTGTGGAGAAAAAAGAAGCTGATCCCAGAAAAGTGATTAATTTTTCAAGTTCTCCTGGTACCCAGACTGTGGAGAAAAAAGAAGCTGATCCCAGAAAAATGATTAATTTTTCAAGTTCTCCTGGTACTGTCGAAGGCAACGCCAATGCCCAAAATACTGCAAATGAGCAGGTGCCATTAATGGCTGCAAGCTCAGCTTCCTTGCCTGCATTATTGAAAGACATTGCTGTGAATCCGACCATGTTGATTAACATACTTAAGTTAGGACAACAACAAAGAGCAGCAGAAGCTCAGCAGAAGGCTGCTGTGCCTGCAGAAAGTATGACATATCCTCCGAGCTCAAGTTCAATACCTGGAGCAGCTGCATTGGTGAATGATCCTTCAAAGACATCTGGAGCTTTGCTGACACCAACCATTAGTTCACTAAAAGCTCCAACGGATGAGGCAGGAAAAGTCCGCATGAAACTCCGGGATCCTCGCCGACTTCTCCACGGTAATGCACTTCAAAAGAGTGGAAGCTTGGGACATGAACAGTTTAGAAATATTGTACCCCCAATGTCAAGCAGTCAGACAAACAAGGATGATATTAATGGGCAAAAGCAAGATAGTCAGGCAGATAACAATTTAGTGCCTCCTCAGTCAGTGGCTGTAGCAGCCCCTGACATTGCTAGCCAATTCACCAAGAATCTTAAAAATATTGCTGATATTATGTCTGTTTCCCAAGTATCTTCCCAAGTATCAACAAGTCCAGCAGTACCTTCTCAGAATCTATCTACGGAACCTGTTCCAATCAACCCAGACAAAGTTGATCAGAAAGCTGAGGACCAGCATACTGTAAGTATATCTGCACCCGAACCAACTGCAGCAGGTCCATCTCGTTCGCCGGCCACATGGGGAGATGTTGAGCATCTATTTGAAGGATATGATGACAAGCAAAAAGCAGCTATCCAAAGAGAGAGAGCAAGAAGGATGGAAGAACAGAAGAAAATGTTTGCAGCACGCAAGCTGTGCCTTGTGCTGGATCTAGATCACACACTTCTAAATTCAGCTAAGTTTGTAGAAGTAGATCCAGTGCATGATGAAATTTTGAGAAAGAAAGAGGAACAGGATCGTAAAGAGCCACAAAGACATCTCTTCCGGTTTCAACATATGGGAATGTGGACCAAATTGCGGCCTGGGGTGTGGAATTTTTTAGAGAAGGCTAGTCATCTTTTTGAGATGCATCTTTACACAATGGGTAACAAGCTATATGCTACAGAAATGGCAAAAGTGCTAGATCCAACAGGGGCTCTTTTTGCTGGACGAGTTATTTCTAGAGGTGATGATGGGGATCCTTATGATGGTGATGAGAGGGTACCTAAGAGTAAGGATCTGGAAGGAGTTTTGGGTATGGAATCAGCTGTTGTAATTATAGATGATTCTGTGAGGGTCTGGCCACATAACAAACTGAATTTGATAGTTGTAGAAAGGTATACCTACTTTCCTTGTAGCAGACGGCAATTTGGGCTTCTAGGTCCTTCCCTTCTTGAGATTGATCATGATGAGAGACATGAAGATGGAACTCTGGCATCCTCATTGGCGGTTATTGAAAAGATACATCAGATCTTCTTCTCCCATCCTTCCCTAGATGAAGCAGATGTTAGAAATATTCTGGCCTCTGAGCAGCAAAAGATTTTGGGTGGTTGTCGTATAGTATTTAGCAGGGTGTTTCCAGTTGGTGAGGTCAATCCTCACCTACATCCTTTGTGGCAGACAGCTGAACAGTTTGGTGCTGTGTGCACCAACCAGATAGATGATCAGGTTACCCATGTAGTTGCCAATTCTCTTGGGACTGACAAGGTGAATTGGGCACTTTCTTCTGGAAAATATGTTGTGCATCCTGGCTGGGTGGAAGCGTCAGCTTTGCTTTATCGGAGGGCAAATGAGCAAGATTTTGCCATTAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005483 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005802 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

1309

Amino Acids

141.94

Weight (kDa)

5.25

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_CPL3	PF25505	211 - 329	8.6e-41	CPL3 ARM repeat domain
NIF	PF03031	996 - 1152	9e-22	NLI interacting factor-like phosphatase
BRCT	PF00533	1244 - 1293	1e-06	BRCA1 C Terminus (BRCT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26670
fragaria_vesca	FvH4_4g30751 FvH4_4g30751
malus_domestica	MD13G1068500.v1.1 MD16G1067300.v1.1
prunus_persica	Prupe.1G279400_v2.0.a1
pyrus_communis	pycom13g06030 pycom16g05880
rosa_chinensis	RchiOBHm_Chr4g0439151
rosa_laevigata	RLG00000006293
rosa_multiflora	Rmu_sc0002236.1_g000003 Rmu_sc0027506.1_g000004
rosa_rugosa	Rorug04G0316100 Rorug04G0316200
rosa_samantha	Rh4AG367000 Rh4BG378500 Rh4CG392800 Rh4DG373100
rosa_wichuraiana	Rw0G007520 Rw0G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2140
AatII	GACGTC	1 cut(s)	1944
Acc36I	ACCTGC	4 cut(s)	977, 1256, 2140, 2837
Acc65I	GGTACC	2 cut(s)	2039, 3334
AccB1I	GGYRCC	3 cut(s)	2039, 2152, 3334
AccB7I	CCANNNNNTGG	2 cut(s)	1984, 2050
AccI	GTMKAC	2 cut(s)	761, 3452
AccII	CGCG	1 cut(s)	270
AciI	CCGC	8 cut(s)	207, 241, 270, 912, 1769, 2437, 3151, 3560
AcoI	YGGCCR	2 cut(s)	2865, 3413
AcsI	RAATTY	6 cut(s)	123, 1429, 3022, 3063, 3166, 3430
AcuI	CTGAAG	5 cut(s)	123, 1032, 1080, 1452, 1671
AcyI	GRCGYC	1 cut(s)	1941
AfaI	GTAC	8 cut(s)	801, 991, 1107, 2041, 2107, 2529, 2736, 3336
AflII	CTTAAG	2 cut(s)	1391, 2237
AjiI	CACGTC	1 cut(s)	1550
AjnI	CCWGG	6 cut(s)	294, 2035, 2101, 2332, 3154, 3859
AjuI	GAANNNNNNNTTGG	2 cut(s)	2383, 2415
AloI	GAACNNNNNNTCC	2 cut(s)	1534, 1566
Alw21I	GWGCWC	3 cut(s)	339, 2321, 3761
Alw26I	GTCTC	5 cut(s)	663, 707, 1322, 1695, 3520
Alw44I	GTGCAC	1 cut(s)	3757
AlwNI	CAGNNNCTG	3 cut(s)	1652, 2627, 2639
Ama87I	CYCGRG	2 cut(s)	259, 1335
AoxI	GGCC	7 cut(s)	309, 675, 1341, 2865, 3152, 3413, 3633
ApaLI	GTGCAC	1 cut(s)	3757
ApoI	RAATTY	6 cut(s)	123, 1429, 3022, 3063, 3166, 3430
ArsI	GACNNNNNNTTYG	2 cut(s)	1408, 1440
AseI	ATTAAT	4 cut(s)	2019, 2085, 2159, 2568
Asp700I	GAANNNNTTC	1 cut(s)	2763
Asp718I	GGTACC	2 cut(s)	2039, 3334
AspA2I	CCTAGG	2 cut(s)	61, 1706
AspLEI	GCGC	1 cut(s)	1528
AspS9I	GGNCC	9 cut(s)	279, 1342, 1625, 1853, 1955, 2803, 2849, 3141, 3494
AsuC2I	CCSGG	3 cut(s)	260, 261, 2450
AsuNHI	GCTAGC	2 cut(s)	1607, 2648
AvaI	CYCGRG	2 cut(s)	259, 1335
AvaII	GGWCC	8 cut(s)	279, 1625, 1853, 1955, 2803, 2849, 3141, 3494
AvrII	CCTAGG	2 cut(s)	61, 1706
AxyI	CCTNAGG	1 cut(s)	1833
BaeGI	GKGCMC	2 cut(s)	3761, 3832
BaeI	ACNNNNGTAYC	2 cut(s)	1035, 1068
BalI	TGGCCA	1 cut(s)	3415
BamHI	GGATCC	3 cut(s)	14, 2452, 3310
BanI	GGYRCC	3 cut(s)	2039, 2152, 3334
BanII	GRGCYC	5 cut(s)	307, 339, 836, 2321, 3271
BauI	CACGAG	1 cut(s)	1251
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	3 cut(s)	339, 2321, 3761
BbvCI	CCTCAGC	1 cut(s)	2799
BceAI	ACGGC	4 cut(s)	296, 782, 1620, 3491
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 2822, 2856
BciT130I	CCWGG	6 cut(s)	296, 2037, 2103, 2334, 3156, 3861
BciVI	GTATCC	1 cut(s)	867
BclI	TGATCA	3 cut(s)	2788, 3514, 3775
BcnI	CCSGG	3 cut(s)	260, 261, 2450
BcoDI	GTCTC	5 cut(s)	663, 707, 1322, 1695, 3520
BfmI	CTRYAG	4 cut(s)	2292, 2628, 2841, 3234
BfrI	CTTAAG	2 cut(s)	1391, 2237
BfuAI	ACCTGC	4 cut(s)	977, 1256, 2140, 2837
BfuI	GTATCC	1 cut(s)	867
BglII	AGATCT	1 cut(s)	3582
BlnI	CCTAGG	2 cut(s)	61, 1706
BlpI	GCTNAGC	3 cut(s)	915, 2173, 2271
Bme1390I	CCNGG	9 cut(s)	260, 261, 296, 2037, 2103, 2334, 2450, 3156, 3861
Bme18I	GGWCC	8 cut(s)	279, 1625, 1853, 1955, 2803, 2849, 3141, 3494
BmeT110I	CYCGRG	2 cut(s)	259, 1335
BmgBI	CACGTC	1 cut(s)	1550
BmgT120I	GGNCC	9 cut(s)	279, 1342, 1625, 1853, 1955, 2803, 2849, 3141, 3494
BmiI	GGNNCC	9 cut(s)	16, 280, 1976, 2041, 2154, 2454, 2760, 3312, 3336
BmrFI	CCNGG	9 cut(s)	260, 261, 296, 2037, 2103, 2334, 2450, 3156, 3861
BmsI	GCATC	7 cut(s)	208, 228, 2896, 3189, 3211, 3557, 3865
BmtI	GCTAGC	2 cut(s)	1611, 2652
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	2 cut(s)	2355, 2394
Bpu10I	CCTNAGC	3 cut(s)	306, 641, 2799
Bpu1102I	GCTNAGC	3 cut(s)	915, 2173, 2271
BpuEI	CTTGAG	3 cut(s)	1798, 2305, 3527
BpuMI	CCSGG	3 cut(s)	260, 261, 2450
BsaBI	GATNNNNATC	2 cut(s)	3006, 3309
BsaHI	GRCGYC	1 cut(s)	1941
BsaI	GGTCTC	1 cut(s)	1695
BsaJI	CCNNGG	6 cut(s)	61, 259, 260, 1706, 2470, 3155
BsaWI	WCCGGW	4 cut(s)	281, 705, 840, 3117
BsaXI	ACNNNNNCTCC	2 cut(s)	2296, 2326
Bse118I	RCCGGY	2 cut(s)	409, 2863
Bse1I	ACTGG	3 cut(s)	1062, 3050, 3692
Bse21I	CCTNAGG	1 cut(s)	1833
Bse3DI	GCAATG	3 cut(s)	430, 2202, 2643
Bse8I	GATNNNNATC	2 cut(s)	3006, 3309
BseBI	CCWGG	6 cut(s)	296, 2037, 2103, 2334, 3156, 3861
BseDI	CCNNGG	6 cut(s)	61, 259, 260, 1706, 2470, 3155
BseJI	GATNNNNATC	2 cut(s)	3006, 3309
BseMI	GCAATG	3 cut(s)	430, 2202, 2643
BseNI	ACTGG	3 cut(s)	1062, 3050, 3692
BseSI	GKGCMC	2 cut(s)	3761, 3832
BseYI	CCCAGC	1 cut(s)	3864
BsgI	GTGCAG	3 cut(s)	335, 1665, 2811
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	7 cut(s)	311, 677, 1343, 2867, 3154, 3415, 3635
BshNI	GGYRCC	3 cut(s)	2039, 2152, 3334
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	3 cut(s)	339, 2321, 3761
BsiHKCI	CYCGRG	2 cut(s)	259, 1335
BsiSI	CCGG	9 cut(s)	260, 282, 410, 420, 706, 841, 2449, 2864, 3118
BslFI	GGGAC	4 cut(s)	257, 1536, 2517, 3823
BsmAI	GTCTC	5 cut(s)	663, 707, 1322, 1695, 3520
BsmFI	GGGAC	4 cut(s)	257, 1536, 2517, 3823
BsnI	GGCC	7 cut(s)	311, 677, 1343, 2867, 3154, 3415, 3635
Bso31I	GGTCTC	1 cut(s)	1695
BsoBI	CYCGRG	2 cut(s)	259, 1335
Bsp1286I	GDGCHC	7 cut(s)	307, 339, 836, 2321, 3271, 3761, 3832
Bsp1720I	GCTNAGC	3 cut(s)	915, 2173, 2271
BspACI	CCGC	8 cut(s)	207, 241, 270, 912, 1769, 2437, 3151, 3560
BspANI	GGCC	7 cut(s)	311, 677, 1343, 2867, 3154, 3415, 3635
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	2 cut(s)	1222, 3517
BspLI	GGNNCC	9 cut(s)	16, 280, 1976, 2041, 2154, 2454, 2760, 3312, 3336
BspMAI	CTGCAG	2 cut(s)	2296, 2845
BspMI	ACCTGC	4 cut(s)	977, 1256, 2140, 2837
BspOI	GCTAGC	2 cut(s)	1611, 2652
BspT107I	GGYRCC	3 cut(s)	2039, 2152, 3334
BspTI	CTTAAG	2 cut(s)	1391, 2237
BspTNI	GGTCTC	1 cut(s)	1695
BsrDI	GCAATG	3 cut(s)	430, 2202, 2643
BsrFI	RCCGGY	2 cut(s)	409, 2863
BsrI	ACTGG	3 cut(s)	1062, 3050, 3692
BssAI	RCCGGY	2 cut(s)	409, 2863
BssECI	CCNNGG	6 cut(s)	61, 259, 260, 1706, 2470, 3155
BssNAI	GTATAC	1 cut(s)	3453
BssNI	GRCGYC	1 cut(s)	1941
BssSI	CACGAG	1 cut(s)	1251
BssT1I	CCWWGG	2 cut(s)	61, 1706
Bst1107I	GTATAC	1 cut(s)	3453
Bst2BI	CACGAG	1 cut(s)	1251
Bst2UI	CCWGG	6 cut(s)	296, 2037, 2103, 2334, 3156, 3861
Bst6I	CTCTTC	3 cut(s)	357, 1467, 3119
BstACI	GRCGYC	1 cut(s)	1941
BstAFI	CTTAAG	2 cut(s)	1391, 2237
BstAPI	GCANNNNNTGC	3 cut(s)	557, 1643, 2988
BstC8I	GCNNGC	9 cut(s)	731, 1609, 2170, 2187, 2292, 2650, 2865, 2980, 2984
BstDSI	CCRYGG	1 cut(s)	2470
BstEII	GGTNACC	1 cut(s)	3781
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	1528
BstMAI	GTCTC	5 cut(s)	663, 707, 1322, 1695, 3520
BstMCI	CGRYCG	1 cut(s)	395
BstNI	CCWGG	6 cut(s)	296, 2037, 2103, 2334, 3156, 3861
BstPI	GGTNACC	1 cut(s)	3781
BstSCI	CCNGG	9 cut(s)	258, 259, 294, 2035, 2101, 2332, 2448, 3154, 3859
BstSFI	CTRYAG	4 cut(s)	2292, 2628, 2841, 3234
BstSLI	GKGCMC	2 cut(s)	3761, 3832
BstUI	CGCG	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	8 cut(s)	14, 2452, 3001, 3046, 3256, 3310, 3349, 3582
BstYI	RGATCY	8 cut(s)	14, 2452, 3001, 3046, 3256, 3310, 3349, 3582
BstZ17I	GTATAC	1 cut(s)	3453
Bsu36I	CCTNAGG	1 cut(s)	1833
BsuI	GTATCC	1 cut(s)	867
BsuRI	GGCC	7 cut(s)	311, 677, 1343, 2867, 3154, 3415, 3635
BtgI	CCRYGG	1 cut(s)	2470
BtrI	CACGTC	1 cut(s)	1550
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	7 cut(s)	147, 160, 466, 792, 1893, 2628, 3057
BveI	ACCTGC	4 cut(s)	977, 1256, 2140, 2837
Cac8I	GCNNGC	9 cut(s)	731, 1609, 2170, 2187, 2292, 2650, 2865, 2980, 2984
CaiI	CAGNNNCTG	3 cut(s)	1652, 2627, 2639
CciI	TCATGA	2 cut(s)	1222, 3517
CfoI	GCGC	1 cut(s)	1528
Cfr10I	RCCGGY	2 cut(s)	409, 2863
Cfr13I	GGNCC	9 cut(s)	279, 1342, 1625, 1853, 1955, 2803, 2849, 3141, 3494
Cfr9I	CCCGGG	1 cut(s)	259
CseI	GACGC	1 cut(s)	3864
Csp6I	GTAC	8 cut(s)	800, 990, 1106, 2040, 2106, 2528, 2735, 3335
CspCI	CAANNNNNGTGG	4 cut(s)	1320, 1355, 1869, 1904
CviQI	GTAC	8 cut(s)	800, 990, 1106, 2040, 2106, 2528, 2735, 3335
EaeI	YGGCCR	2 cut(s)	2865, 3413
Eam1104I	CTCTTC	3 cut(s)	357, 1467, 3119
EarI	CTCTTC	3 cut(s)	357, 1467, 3119
EciI	GGCGGA	1 cut(s)	222
Ecl136II	GAGCTC	2 cut(s)	337, 2319
Eco130I	CCWWGG	2 cut(s)	61, 1706
Eco24I	GRGCYC	5 cut(s)	307, 339, 836, 2321, 3271
Eco31I	GGTCTC	1 cut(s)	1695
Eco32I	GATATC	1 cut(s)	945
Eco47I	GGWCC	8 cut(s)	279, 1625, 1853, 1955, 2803, 2849, 3141, 3494
Eco53kI	GAGCTC	2 cut(s)	337, 2319
Eco57I	CTGAAG	5 cut(s)	123, 1032, 1080, 1452, 1671
Eco81I	CCTNAGG	1 cut(s)	1833
Eco88I	CYCGRG	2 cut(s)	259, 1335
Eco91I	GGTNACC	1 cut(s)	3781
EcoICRI	GAGCTC	2 cut(s)	337, 2319
EcoO109I	RGGNCCY	1 cut(s)	3494
EcoO65I	GGTNACC	1 cut(s)	3781
EcoRI	GAATTC	1 cut(s)	1429
EcoRII	CCWGG	6 cut(s)	294, 2035, 2101, 2332, 3154, 3859
EcoRV	GATATC	1 cut(s)	945
EcoT14I	CCWWGG	2 cut(s)	61, 1706
EcoT22I	ATGCAT	2 cut(s)	1371, 3204
EcoT38I	GRGCYC	5 cut(s)	307, 339, 836, 2321, 3271
ErhI	CCWWGG	2 cut(s)	61, 1706
FalI	AAGNNNNNCTT	6 cut(s)	759, 791, 1221, 1253, 2161, 2193
FaqI	GGGAC	4 cut(s)	257, 1536, 2517, 3823
FauI	CCCGC	1 cut(s)	234
FauNDI	CATATG	1 cut(s)	3129
FbaI	TGATCA	3 cut(s)	2788, 3514, 3775
FblI	GTMKAC	2 cut(s)	761, 3452
FriOI	GRGCYC	5 cut(s)	307, 339, 836, 2321, 3271
GlaI	GCGC	1 cut(s)	1527
GsaI	CCCAGC	1 cut(s)	3868
GsuI	CTGGAG	2 cut(s)	2355, 2394
HaeIII	GGCC	7 cut(s)	311, 677, 1343, 2867, 3154, 3415, 3635
HapII	CCGG	9 cut(s)	260, 282, 410, 420, 706, 841, 2449, 2864, 3118
HgaI	GACGC	1 cut(s)	3864
HhaI	GCGC	1 cut(s)	1528
Hin1I	GRCGYC	1 cut(s)	1941
Hin6I	GCGC	1 cut(s)	1526
HinP1I	GCGC	1 cut(s)	1526
HincII	GTYRAC	2 cut(s)	292, 1027
HindII	GTYRAC	2 cut(s)	292, 1027
HindIII	AAGCTT	2 cut(s)	727, 2497
HpaI	GTTAAC	2 cut(s)	292, 1027
HpaII	CCGG	9 cut(s)	260, 282, 410, 420, 706, 841, 2449, 2864, 3118
Hpy99I	CGWCG	1 cut(s)	400
HpyCH4IV	ACGT	2 cut(s)	1549, 1941
HpySE526I	ACGT	2 cut(s)	1549, 1941
Hsp92I	GRCGYC	1 cut(s)	1941
HspAI	GCGC	1 cut(s)	1526
KpnI	GGTACC	2 cut(s)	2043, 3338
KroI	GCCGGC	1 cut(s)	2863
KroNI	GCCGGC	1 cut(s)	2865
Ksp22I	TGATCA	3 cut(s)	2788, 3514, 3775
KspAI	GTTAAC	2 cut(s)	292, 1027
LmnI	GCTCC	4 cut(s)	847, 2336, 2375, 2416
LweI	GCATC	7 cut(s)	208, 228, 2896, 3189, 3211, 3557, 3865
MaeII	ACGT	2 cut(s)	1549, 1941
MaeIII	GTNAC	3 cut(s)	1600, 3218, 3781
MfeI	CAATTG	3 cut(s)	19, 37, 1764
MflI	RGATCY	8 cut(s)	14, 2452, 3001, 3046, 3256, 3310, 3349, 3582
MhlI	GDGCHC	7 cut(s)	307, 339, 836, 2321, 3271, 3761, 3832
MlsI	TGGCCA	1 cut(s)	3415
MluNI	TGGCCA	1 cut(s)	3415
MlyI	GAGTC	4 cut(s)	539, 665, 1182, 1847
MmeI	TCCRAC	8 cut(s)	480, 1305, 1406, 1914, 1933, 2240, 2438, 3284
Mox20I	TGGCCA	1 cut(s)	3415
Mph1103I	ATGCAT	2 cut(s)	1371, 3204
MroNI	GCCGGC	1 cut(s)	2863
MroXI	GAANNNNTTC	1 cut(s)	2763
MscI	TGGCCA	1 cut(s)	3415
MslI	CAYNNNNRTG	4 cut(s)	1374, 2207, 2475, 3534
Msp20I	TGGCCA	1 cut(s)	3415
MspA1I	CMGCKG	5 cut(s)	554, 914, 2342, 3380, 3737
MspCI	CTTAAG	2 cut(s)	1391, 2237
MspI	CCGG	9 cut(s)	260, 282, 410, 420, 706, 841, 2449, 2864, 3118
MspR9I	CCNGG	9 cut(s)	260, 261, 296, 2037, 2103, 2334, 2450, 3156, 3861
MunI	CAATTG	3 cut(s)	19, 37, 1764
MvaI	CCWGG	6 cut(s)	296, 2037, 2103, 2334, 3156, 3861
MvnI	CGCG	1 cut(s)	270
NaeI	GCCGGC	1 cut(s)	2865
NciI	CCSGG	3 cut(s)	260, 261, 2450
NdeI	CATATG	1 cut(s)	3129
NgoMIV	GCCGGC	1 cut(s)	2863
NheI	GCTAGC	2 cut(s)	1607, 2648
NlaIV	GGNNCC	9 cut(s)	16, 280, 1976, 2041, 2154, 2454, 2760, 3312, 3336
NmeAIII	GCCGAG	1 cut(s)	703
NmuCI	GTSAC	1 cut(s)	1600
NsiI	ATGCAT	2 cut(s)	1371, 3204
PacI	TTAATTAA	1 cut(s)	1968
PagI	TCATGA	2 cut(s)	1222, 3517
PaqCI	CACCTGC	1 cut(s)	2140
PdiI	GCCGGC	1 cut(s)	2865
PdmI	GAANNNNTTC	1 cut(s)	2763
PflMI	CCANNNNNTGG	2 cut(s)	1984, 2050
PfoI	TCCNGGA	1 cut(s)	2448
Ple19I	CGATCG	1 cut(s)	395
PleI	GAGTC	4 cut(s)	538, 664, 1182, 1846
PpsI	GAGTC	4 cut(s)	538, 664, 1182, 1846
PpuMI	RGGWCCY	1 cut(s)	3494
PshBI	ATTAAT	4 cut(s)	2019, 2085, 2159, 2568
Psp124BI	GAGCTC	2 cut(s)	339, 2321
Psp5II	RGGWCCY	1 cut(s)	3494
Psp6I	CCWGG	6 cut(s)	294, 2035, 2101, 2332, 3154, 3859
PspEI	GGTNACC	1 cut(s)	3781
PspFI	CCCAGC	1 cut(s)	3864
PspGI	CCWGG	6 cut(s)	294, 2035, 2101, 2332, 3154, 3859
PspN4I	GGNNCC	9 cut(s)	16, 280, 1976, 2041, 2154, 2454, 2760, 3312, 3336
PspPI	GGNCC	9 cut(s)	279, 1342, 1625, 1853, 1955, 2803, 2849, 3141, 3494
PspPPI	RGGWCCY	1 cut(s)	3494
PsrI	GAACNNNNNNTAC	2 cut(s)	1104, 1136
PstI	CTGCAG	2 cut(s)	2296, 2845
PstNI	CAGNNNCTG	3 cut(s)	1652, 2627, 2639
PsuI	RGATCY	8 cut(s)	14, 2452, 3001, 3046, 3256, 3310, 3349, 3582
PvuI	CGATCG	1 cut(s)	395
PvuII	CAGCTG	4 cut(s)	554, 2342, 3380, 3737
RsaI	GTAC	8 cut(s)	801, 991, 1107, 2041, 2107, 2529, 2736, 3336
RsaNI	GTAC	8 cut(s)	800, 990, 1106, 2040, 2106, 2528, 2735, 3335
RseI	CAYNNNNRTG	4 cut(s)	1374, 2207, 2475, 3534
SacI	GAGCTC	2 cut(s)	339, 2321
Sau96I	GGNCC	9 cut(s)	279, 1342, 1625, 1853, 1955, 2803, 2849, 3141, 3494
SchI	GAGTC	4 cut(s)	539, 665, 1182, 1847
ScrFI	CCNGG	9 cut(s)	260, 261, 296, 2037, 2103, 2334, 2450, 3156, 3861
SduI	GDGCHC	7 cut(s)	307, 339, 836, 2321, 3271, 3761, 3832
SfaNI	GCATC	7 cut(s)	208, 228, 2896, 3189, 3211, 3557, 3865
SfcI	CTRYAG	4 cut(s)	2292, 2628, 2841, 3234
SinI	GGWCC	8 cut(s)	279, 1625, 1853, 1955, 2803, 2849, 3141, 3494
SmaI	CCCGGG	1 cut(s)	261
SmiMI	CAYNNNNRTG	4 cut(s)	1374, 2207, 2475, 3534
SmlI	CTYRAG	5 cut(s)	1391, 1813, 2237, 2320, 3506
SmoI	CTYRAG	5 cut(s)	1391, 1813, 2237, 2320, 3506
SsiI	CCGC	8 cut(s)	207, 241, 270, 912, 1769, 2437, 3151, 3560
SspI	AATATT	3 cut(s)	2524, 2677, 3628
SstI	GAGCTC	2 cut(s)	339, 2321
StyD4I	CCNGG	9 cut(s)	258, 259, 294, 2035, 2101, 2332, 2448, 3154, 3859
StyI	CCWWGG	2 cut(s)	61, 1706
TaiI	ACGT	2 cut(s)	1552, 1944
TaqI	TCGA	6 cut(s)	51, 134, 371, 827, 1714, 2112
TauI	GCSGC	2 cut(s)	273, 3154
TscAI	CASTG	7 cut(s)	147, 160, 466, 799, 1893, 2628, 3057
TseFI	GTSAC	1 cut(s)	1600
Tsp45I	GTSAC	1 cut(s)	1600
TspDTI	ATGAA	9 cut(s)	593, 1112, 1242, 1392, 2456, 2523, 3075, 3546, 3624
TspGWI	ACGGA	2 cut(s)	2432, 2771
TspMI	CCCGGG	1 cut(s)	259
TspRI	CASTG	7 cut(s)	147, 160, 466, 799, 1893, 2628, 3057
Van91I	CCANNNNNTGG	2 cut(s)	1984, 2050
Vha464I	CTTAAG	2 cut(s)	1391, 2237
VneI	GTGCAC	1 cut(s)	3757
VpaK11BI	GGWCC	8 cut(s)	279, 1625, 1853, 1955, 2803, 2849, 3141, 3494
VspI	ATTAAT	4 cut(s)	2019, 2085, 2159, 2568
XapI	RAATTY	6 cut(s)	123, 1429, 3022, 3063, 3166, 3430
XbaI	TCTAGA	2 cut(s)	3004, 3293
XmaI	CCCGGG	1 cut(s)	259
XmaJI	CCTAGG	2 cut(s)	61, 1706
XmiI	GTMKAC	2 cut(s)	761, 3452
XmnI	GAANNNNTTC	1 cut(s)	2763
ZraI	GACGTC	1 cut(s)	1942
Zsp2I	ATGCAT	2 cut(s)	1371, 3204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.