AT1G27595

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006768
Physical Location & Seq
Forward (+)
9592088 .. 9602917
10830 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27595.2

Sequence Viewer

Length: 3978 bp
ATGGCGGCTCCGGCTGCCGCGACAGCGAGGGCACAGGCGCTCTCTCTCCTCGCCGCTGCTAATAACCACGGCGATTTGGCAGTGAAGCTCTCGTCTCTTAGACAGGTGAAGGAGATTTTGCTGTCACTGGAGCCGTCTTTGTCTGCTGAGATTTTCCCCTATCTCGCAGAACTCCACTTGTCCCGTGAAATTCTAGTTCGCAAATCCCTTATCGAGATCATTGAAGAGGTTGGTTTGCGGATGCTGGATCATTCTTATGTTCTAGTGAGTGTCTTACTAGTCTTATCAAGGGACGAGGATCCAACTGTTGCAAAGAAATCTATTTCTGTTGGCACAACTTTCTTTTGCACCATCTTGGAGGAGATGGCAATGCAGTTCCATCACCGTGGGAAAGTTGATCGTTGGTGTGGGGAACTGTGGACATGGATGGTTAAGTTCAAAGATACTGTCTTTGCCACTGCATTGGAGCCTGGTTGTGTAGGGGTGAAAGTTCTTGCTCTAAAGTTTATGGAGACTTTTATTTTACTCTTTACTCCTGATGCATCTGATCCTGAGAAAGCTTCCAGCGAAGGAAGTAGACATATGTTCAATATTTCCTGGCTTGCTGGCGGTCACCCCATTCTGAATCCAGCAACGCTCATGTCTGAAGCAAATAGGACATTTGGCATCTTAGTAGATTTCATACAGTCAGCTAATCGTTTACCGGGTGCATTGACGATATCTGTTATTAGTTGTCTTGCAGTGGTAGCAAGGAAGAGGCCTGTCCACTACAACACTGTCCTCTCTGTTCTGCTGGAGTTTCACCCAAATCTTGAGACGGTTAAGGGGTGCCATGCTGCAAGCGTTCAGTATTCCATTAGAACTGCCTTTCTGGGATTTCTTCGATGTACTTTCTCACCAATAATAGAGTCAAGAGACAAGCTTCTTAGAGCATTTCGAGCAATGAATGCTGCAGATGTTGCTGACCAAGTTCTCCGTCAAGTTGATAAATTGGTCAGAAATAACGAACGTGCTGCACGTGAAAATTGGTCAGGCAAGAATAACCAGGTGATTAGTCATCAAAATTCTTGGGATCTGTCAAAGAAACGAATAATGCCCCAGGGTGAAGATGATACAATCAATGGAGAGGTTGCTCCGAAGCGCGTACGCCATAATACTAACATGCATTTGACCCAGCAAGTTCAAACAAATGAATCCCTACAGGGACCTGTCTCTATCAATGGCATTTCCTCTGGTAACCATCTTTCGGACAGTGAGTTGACTCCAGTGGAACAAATGGTTTCAATGATTGGTGCTTTGCTTGCTGAAGGAGACAGAGGAGCTGCCTCACTTGAAATTCTCATTTCTAAGCTTCATCCAGATATGCTTGCTGATATAGTAATAACAAGCATGAAACACTTGCCTAGTACCCCTCCCACGTTGGCAAGTTCAGTGGCTACTCCAGCAGATATTGTGGTATCTTCTTCTACAAATACCGTGCATTCTCCGACTCCTCCGGCACAACTTCCTTTTGATCCAATCCTTCCTGCTGGGTCATCGTTTTCCGAAGTGCCTAGCTTGAGTAGCTCGGTTGCCGACCCTAGACGCGACCCAAGAAGGGATCCCCGTCGCATGGATCCAAGGCGTTTAAATTCATCTGTGGGACCAACGTCACTCCCTGTAGGTGAGGGTAAAGAATCAGTTCCAGTACAGAAGGACATCTCTACCTTACTGAGTAAGCCAGTCTCAGTTTCTGCTGTCACGCCAGGGGCTACTGGTTCTGTACATTCAACAGCAGTAGAGCTTAGCCAGAATAAGATGATGGGAAGTTCAGGAATCAGAATAATTGATCCGCCTGAATGCAGAGAGGACTTGTTGACTGTTCCCAATGAGTGTTCTTACCCGTCAAAGGAAATATCATCCTTAGATGTTCCACTATCTCCTTGCAGGGATGATGAAGGCATCAGAGAGACAAAGTATTCAGTCCCAGATTTGGATATGTTGTCTGTCCCAGATTTTGATCAACATTCGCCTTCAGCATCAGTCCCAGATTTTGATCAAGATCCCCCTGCAGCATCAGACATTACTGCACCAGAAGAAAGCTATCGAGAGTTGGACCCTGTTCCGTCATATGTTGAACTTACCACAGAGCAAAGCAAAACTGTAGGAAAGTTGGCTATTGAACGGATAATTGAATCAAATAGACATGTCTTTGGGTTTGATTGTAACAAGATACGCATGGCATTGATTGCCCGATTGATTGCTAGAATCGATGCTGGCAGTGATGTTGCAACCATACTAAGAGAGCTTATTAGTGTGGACCATCGAGAATTCAAGGGGCACGATCTTGTTTTACATGTTCTCTACCATCTGCATTCAATGGCCATTCTGGACACAGATGAATCCTCTTTCTATGCTACTGTTTATGAAAATTTTCTCATATCAGTGGCAAGATCATTTCTGGATGCGCTTCCTGCTTCTGACAAGTCTTTTAGTAGACTTTTTGGAGAAGCTCCACATTTACCTGATTCTGCCATAAACCTACTGGATGAACTCTGCTCCACTCGTCATGACCCAGTTGGAAAAGAAGTTTGTGATAGTGAGCGTGTTACCCAAGGGCTTGGTGCTGTTTGGAGCTTAATTTTAGTGCGTCCAAATGAGCGAAAAGCATGCTTAGCTATAGCATTGAAGTGTTCTGTTCATTCTGAAGAAGAGGTCCGCGCAAAAGCCATCCGACTTGTCACGAACAAACTATATCACCTAACATACATAGCAGAGCATGTTGAGCAATTTGCAACAGATATGTTGCTGACTGCTGTAAACTCTGAGACAAATCTCTCACAGACTGCATCAACTGCAGAAGGAATAAAAATGGAGGCAAAAAGCCAGATAACTTTGACAACTGAGTCTCTAGGGTCTGGAAACTCCGACATTCCCTCTCAGCAGGATCTACAAACTTCTCGTGAAGTTTCAGTTATATCAATTTCTGAAGCTCAGAGACTGATTTCTCTGTTCTTTGCTTTGTGTAAAAAGAAACCTAGTCTCCTTCGACTTGTCTTTGAAGTTTATGGGAGAGCTCCAAAAATGGTAAACCAGGCTTTTCATCGACATATACCTATCCTAATACGAGAATTAGGTTCATCTTATACGGAACTACTCCAAATAATATCCGACCCTCCTAAGGGAAGTGAAAATTTATTGACATATGTGTTGCAAATATTGACACAAGAATTGGCACCTTCTTTGGATTTGATTGCTACTGTAAAACATCTATATGAAACAAAGCTAAAGGATGTTTCAATTCTTATTCCATTGCTTTCTTCACTCACTAAAGACGAGGTTTTGCCCATCTTTCCTCCCCTTCTTAATCTTCCGCCTGAAAAGTTTCAACTTGCACTTGCTCATATATTACAGGGTTCTGCTCACACAGGCCCTGCACTTACACCTGCCGAGGTACTGATTGCTATCCACGATATTGTTCCTGAGAAGGATGGGCCACCACTTAAAAAGATAACAGATGCATGCTCAGCTTGCTTTGAACAACGCACTGTTTTCACGCAGCAAGTCTTAGCAAAGGCCCTCGGTCAGATGGTTGATCGAACTCCTCTGCCTTTACTCTTCATGCGAACGGTTATCCAGGCAATCGATGCTTTTCCAACACTAGTTGATTTTGTAATGGAAATTCTTTCCAAGTTGGTGAGGAAGCAGATCTGGAGGCTGCCAAAATTGTGGCCTGGCTTCTTAAAATGTGTGTCTCAGACAAAGCCGCATTCTTTCCCTGTTTTATTGGAGTTACCAGTGCCTCAACTTGAAAGTATCATGAAGAAGTTTCCTGATCTAAGACCTTCCCTCACTGCTTATGCGAATCAGCCAACTATCAGATCTTCTCTACCAAATTCAGCTCTTTCAGTTCTTGGGCTTGACAATGGGCAAGATTCACGTTCACAAATGCACCCTTCAGATGCAACTTCGTCTATTCATGGGGCGGCCTTAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko04530 map03015 map04530
Pfam Domains
Protein Families
DUF3453 Symplekin_C

Protein Analysis

1325

Amino Acids

145.45

Weight (kDa)

5.96

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SYMPK_PTA1_N PF11935 100 - 244 1.4e-25 Symplekin/PTA1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3433
AasI GACNNNNNNGTC 1 cut(s) 2884
Acc36I ACCTGC 1 cut(s) 3433
AccB1I GGYRCC 2 cut(s) 828, 3214
AccI GTMKAC 2 cut(s) 577, 2476
AccII CGCG 4 cut(s) 20, 1143, 1587, 2700
AcoI YGGCCR 1 cut(s) 2361
AcsI RAATTY 9 cut(s) 189, 1063, 1335, 1630, 2309, 2410, 3172, 3660, 3874
AcuI CTGAAG 6 cut(s) 666, 1326, 1998, 2706, 2988, 3921
AcvI CACGTG 1 cut(s) 1019
AfaI GTAC 6 cut(s) 889, 1146, 1408, 1689, 1764, 3435
AfiI CCNNNNNNNGG 7 cut(s) 1246, 1597, 1612, 1888, 1972, 3160, 3161
AflIII ACRYGT 2 cut(s) 2185, 2335
AhlI ACTAGT 2 cut(s) 277, 3640
AjnI CCWGG 8 cut(s) 469, 596, 1044, 1098, 1744, 3072, 3615, 3712
Alw21I GWGCWC 1 cut(s) 3058
AlwNI CAGNNNCTG 3 cut(s) 1733, 2980, 3413
AoxI GGCC 7 cut(s) 758, 2361, 3409, 3473, 3555, 3710, 3966
ApeKI GCWGC 9 cut(s) 14, 56, 836, 950, 1013, 1322, 2051, 3538, 3697
ApoI RAATTY 9 cut(s) 189, 1063, 1335, 1630, 2309, 2410, 3172, 3660, 3874
ArsI GACNNNNNNTTYG 2 cut(s) 432, 464
Asp700I GAANNNNTTC 3 cut(s) 1680, 2412, 3363
AspLEI GCGC 4 cut(s) 40, 1143, 2449, 2702
AspS9I GGNCC 8 cut(s) 1205, 1643, 2095, 2299, 2695, 3410, 3473, 3556
AsuC2I CCSGG 1 cut(s) 705
AvaII GGWCC 5 cut(s) 1205, 1643, 2095, 2299, 2695
AxyI CCTNAGG 1 cut(s) 3159
BaeGI GKGCMC 2 cut(s) 34, 2322
BalI TGGCCA 1 cut(s) 2363
BamHI GGATCC 3 cut(s) 298, 1600, 1615
BanI GGYRCC 2 cut(s) 828, 3214
BanII GRGCYC 1 cut(s) 3058
BauI CACGAG 1 cut(s) 2940
BbrPI CACGTG 1 cut(s) 1019
Bbv12I GWGCWC 1 cut(s) 3058
BbvI GCAGC 8 cut(s) 43, 823, 937, 1000, 1309, 2063, 3550, 3684
BceAI ACGGC 2 cut(s) 85, 118
BcgI CGANNNNNNTGC 4 cut(s) 995, 1029, 2631, 2665
BciT130I CCWGG 8 cut(s) 471, 598, 1046, 1100, 1746, 3074, 3617, 3714
BclI TGATCA 2 cut(s) 1999, 2035
BcnI CCSGG 1 cut(s) 705
BcuI ACTAGT 2 cut(s) 277, 3640
BfmI CTRYAG 7 cut(s) 951, 1199, 1659, 2049, 2142, 2658, 2835
BfoI RGCGCY 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 3433
BglII AGATCT 2 cut(s) 3687, 3860
BlpI GCTNAGC 3 cut(s) 1784, 2653, 3505
Bme1390I CCNGG 9 cut(s) 471, 598, 705, 1046, 1100, 1746, 3074, 3617, 3714
Bme18I GGWCC 5 cut(s) 1205, 1643, 2095, 2299, 2695
BmgT120I GGNCC 8 cut(s) 1205, 1643, 2095, 2299, 2695, 3410, 3473, 3556
BmrFI CCNGG 9 cut(s) 471, 598, 705, 1046, 1100, 1746, 3074, 3617, 3714
BmrI ACTGGG 1 cut(s) 2549
BmuI ACTGGG 1 cut(s) 2549
BoxI GACNNNNGTC 1 cut(s) 1648
BpmI CTGGAG 5 cut(s) 149, 815, 1248, 1425, 3712
Bpu1102I GCTNAGC 3 cut(s) 1784, 2653, 3505
BpuEI CTTGAG 2 cut(s) 833, 1579
BpuMI CCSGG 1 cut(s) 705
Bsa29I ATCGAT 2 cut(s) 2250, 3624
BsaAI YACGTR 1 cut(s) 1019
BsaBI GATNNNNATC 4 cut(s) 1998, 2034, 2040, 3443
BsaJI CCNNGG 9 cut(s) 67, 385, 1098, 1099, 1619, 1745, 2593, 3429, 3559
BsaXI ACNNNNNCTCC 2 cut(s) 3006, 3036
Bsc4I CCNNNNNNNGG 7 cut(s) 1246, 1597, 1612, 1888, 1972, 3160, 3161
Bse1I ACTGG 8 cut(s) 132, 1265, 1685, 1721, 1759, 2529, 2555, 3776
Bse21I CCTNAGG 1 cut(s) 3159
Bse3DI GCAATG 3 cut(s) 375, 948, 3290
Bse8I GATNNNNATC 4 cut(s) 1998, 2034, 2040, 3443
BseBI CCWGG 8 cut(s) 471, 598, 1046, 1100, 1746, 3074, 3617, 3714
BseCI ATCGAT 2 cut(s) 2250, 3624
BseDI CCNNGG 9 cut(s) 67, 385, 1098, 1099, 1619, 1745, 2593, 3429, 3559
BseJI GATNNNNATC 4 cut(s) 1998, 2034, 2040, 3443
BseLI CCNNNNNNNGG 7 cut(s) 1246, 1597, 1612, 1888, 1972, 3160, 3161
BseMI GCAATG 3 cut(s) 375, 948, 3290
BseNI ACTGG 8 cut(s) 132, 1265, 1685, 1721, 1759, 2529, 2555, 3776
BseRI GAGGAG 5 cut(s) 38, 374, 1332, 1482, 3573
BseSI GKGCMC 2 cut(s) 34, 2322
BseXI GCAGC 8 cut(s) 43, 823, 937, 1000, 1309, 2063, 3550, 3684
BseYI CCCAGC 2 cut(s) 1173, 1529
BsgI GTGCAG 3 cut(s) 999, 2052, 3399
Bsh1236I CGCG 4 cut(s) 20, 1143, 1587, 2700
BshFI GGCC 7 cut(s) 760, 2363, 3411, 3475, 3557, 3712, 3968
BshNI GGYRCC 2 cut(s) 828, 3214
BshVI ATCGAT 2 cut(s) 2250, 3624
BsiHKAI GWGCWC 1 cut(s) 3058
BsiSI CCGG 3 cut(s) 11, 704, 1496
BsiWI CGTACG 1 cut(s) 1144
BslFI GGGAC 7 cut(s) 166, 305, 1218, 1656, 1949, 1973, 2009
BslI CCNNNNNNNGG 7 cut(s) 1246, 1597, 1612, 1888, 1972, 3160, 3161
BsmBI CGTCTC 2 cut(s) 99, 809
BsmFI GGGAC 7 cut(s) 166, 305, 1218, 1656, 1949, 1973, 2009
BsmI GAATGC 5 cut(s) 952, 1480, 1844, 2353, 3748
BsnI GGCC 7 cut(s) 760, 2363, 3411, 3475, 3557, 3712, 3968
Bsp1286I GDGCHC 3 cut(s) 34, 2322, 3058
Bsp1407I TGTACA 1 cut(s) 1762
Bsp1720I GCTNAGC 3 cut(s) 1784, 2653, 3505
BspANI GGCC 7 cut(s) 760, 2363, 3411, 3475, 3557, 3712, 3968
BspDI ATCGAT 2 cut(s) 2250, 3624
BspFNI CGCG 4 cut(s) 20, 1143, 1587, 2700
BspHI TCATGA 2 cut(s) 2548, 3798
BspMAI CTGCAG 3 cut(s) 955, 2053, 2839
BspMI ACCTGC 1 cut(s) 3433
BspT107I GGYRCC 2 cut(s) 828, 3214
BsrDI GCAATG 3 cut(s) 375, 948, 3290
BsrGI TGTACA 1 cut(s) 1762
BsrI ACTGG 8 cut(s) 132, 1265, 1685, 1721, 1759, 2529, 2555, 3776
BssECI CCNNGG 9 cut(s) 67, 385, 1098, 1099, 1619, 1745, 2593, 3429, 3559
BssSI CACGAG 1 cut(s) 2940
BssT1I CCWWGG 2 cut(s) 1619, 2593
Bst2BI CACGAG 1 cut(s) 2940
Bst2UI CCWGG 8 cut(s) 471, 598, 1046, 1100, 1746, 3074, 3617, 3714
Bst6I CTCTTC 4 cut(s) 219, 749, 2685, 3602
BstAPI GCANNNNNTGC 5 cut(s) 947, 959, 2228, 2834, 3626
BstAUI TGTACA 1 cut(s) 1762
BstBAI YACGTR 1 cut(s) 1019
BstC8I GCNNGC 9 cut(s) 603, 607, 841, 1302, 1368, 2257, 2650, 3502, 3511
BstDSI CCRYGG 2 cut(s) 67, 385
BstEII GGTNACC 2 cut(s) 611, 1235
BstFNI CGCG 4 cut(s) 20, 1143, 1587, 2700
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 4 cut(s) 40, 1143, 2449, 2702
BstNI CCWGG 8 cut(s) 471, 598, 1046, 1100, 1746, 3074, 3617, 3714
BstNSI RCATGY 6 cut(s) 1165, 2189, 2339, 2652, 2762, 3504
BstPAI GACNNNNGTC 1 cut(s) 1648
BstPI GGTNACC 2 cut(s) 611, 1235
BstSCI CCNGG 9 cut(s) 469, 596, 703, 1044, 1098, 1744, 3072, 3615, 3712
BstSFI CTRYAG 7 cut(s) 951, 1199, 1659, 2049, 2142, 2658, 2835
BstSLI GKGCMC 2 cut(s) 34, 2322
BstUI CGCG 4 cut(s) 20, 1143, 1587, 2700
BstV1I GCAGC 8 cut(s) 43, 823, 937, 1000, 1309, 2063, 3550, 3684
BstX2I RGATCY 8 cut(s) 298, 1072, 1600, 1615, 2041, 2926, 3687, 3860
BstXI CCANNNNNNTGG 4 cut(s) 386, 463, 2600, 3708
BstYI RGATCY 8 cut(s) 298, 1072, 1600, 1615, 2041, 2926, 3687, 3860
Bsu15I ATCGAT 2 cut(s) 2250, 3624
Bsu36I CCTNAGG 1 cut(s) 3159
BsuRI GGCC 7 cut(s) 760, 2363, 3411, 3475, 3557, 3712, 3968
BsuTUI ATCGAT 2 cut(s) 2250, 3624
BtgI CCRYGG 2 cut(s) 67, 385
BtsI GCAGTG 5 cut(s) 87, 456, 747, 2266, 3831
BveI ACCTGC 1 cut(s) 3433
Cac8I GCNNGC 9 cut(s) 603, 607, 841, 1302, 1368, 2257, 2650, 3502, 3511
CaiI CAGNNNCTG 3 cut(s) 1733, 2980, 3413
CciI TCATGA 2 cut(s) 2548, 3798
CfoI GCGC 4 cut(s) 40, 1143, 2449, 2702
Cfr13I GGNCC 8 cut(s) 1205, 1643, 2095, 2299, 2695, 3410, 3473, 3556
ClaI ATCGAT 2 cut(s) 2250, 3624
CseI GACGC 2 cut(s) 1593, 2618
CsiI ACCWGGT 1 cut(s) 1044
Csp6I GTAC 6 cut(s) 888, 1145, 1407, 1688, 1763, 3434
CspCI CAANNNNNGTGG 2 cut(s) 1413, 1448
CviQI GTAC 6 cut(s) 888, 1145, 1407, 1688, 1763, 3434
DraI TTTAAA 1 cut(s) 1629
DrdI GACNNNNNNGTC 1 cut(s) 2884
DseDI GACNNNNNNGTC 1 cut(s) 2884
EaeI YGGCCR 1 cut(s) 2361
Eam1104I CTCTTC 4 cut(s) 219, 749, 2685, 3602
EarI CTCTTC 4 cut(s) 219, 749, 2685, 3602
EciI GGCGGA 2 cut(s) 1821, 3342
Ecl136II GAGCTC 1 cut(s) 3056
Eco130I CCWWGG 2 cut(s) 1619, 2593
Eco147I AGGCCT 1 cut(s) 760
Eco24I GRGCYC 1 cut(s) 3058
Eco32I GATATC 1 cut(s) 720
Eco47I GGWCC 5 cut(s) 1205, 1643, 2095, 2299, 2695
Eco53kI GAGCTC 1 cut(s) 3056
Eco57I CTGAAG 6 cut(s) 666, 1326, 1998, 2706, 2988, 3921
Eco72I CACGTG 1 cut(s) 1019
Eco81I CCTNAGG 1 cut(s) 3159
Eco91I GGTNACC 2 cut(s) 611, 1235
EcoICRI GAGCTC 1 cut(s) 3056
EcoO109I RGGNCCY 3 cut(s) 1205, 3410, 3556
EcoO65I GGTNACC 2 cut(s) 611, 1235
EcoRI GAATTC 1 cut(s) 2309
EcoRII CCWGG 8 cut(s) 469, 596, 1044, 1098, 1744, 3072, 3615, 3712
EcoRV GATATC 1 cut(s) 720
EcoT14I CCWWGG 2 cut(s) 1619, 2593
EcoT22I ATGCAT 3 cut(s) 544, 1167, 3502
EcoT38I GRGCYC 1 cut(s) 3058
ErhI CCWWGG 2 cut(s) 1619, 2593
Esp3I CGTCTC 2 cut(s) 99, 809
FaqI GGGAC 7 cut(s) 166, 305, 1218, 1656, 1949, 1973, 2009
FauNDI CATATG 3 cut(s) 582, 2110, 3184
FbaI TGATCA 2 cut(s) 1999, 2035
FblI GTMKAC 2 cut(s) 577, 2476
FriOI GRGCYC 1 cut(s) 3058
GlaI GCGC 4 cut(s) 39, 1142, 2448, 2701
GsaI CCCAGC 2 cut(s) 1177, 1533
GsuI CTGGAG 5 cut(s) 149, 815, 1248, 1425, 3712
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 7 cut(s) 760, 2363, 3411, 3475, 3557, 3712, 3968
HapII CCGG 3 cut(s) 11, 704, 1496
HgaI GACGC 2 cut(s) 1593, 2618
HhaI GCGC 4 cut(s) 40, 1143, 2449, 2702
Hin6I GCGC 4 cut(s) 38, 1141, 2447, 2700
HinP1I GCGC 4 cut(s) 38, 1141, 2447, 2700
HincII GTYRAC 2 cut(s) 1260, 1857
HindII GTYRAC 2 cut(s) 1260, 1857
HindIII AAGCTT 3 cut(s) 558, 920, 1349
HpaII CCGG 3 cut(s) 11, 704, 1496
Hpy99I CGWCG 1 cut(s) 1611
HpyCH4IV ACGT 6 cut(s) 1009, 1018, 1418, 1649, 3919, 3974
HpySE526I ACGT 6 cut(s) 1009, 1018, 1418, 1649, 3919, 3974
HspAI GCGC 4 cut(s) 38, 1141, 2447, 2700
Ksp22I TGATCA 2 cut(s) 1999, 2035
LmnI GCTCC 9 cut(s) 13, 130, 466, 1138, 1319, 2497, 2543, 2613, 3061
Lsp1109I GCAGC 8 cut(s) 43, 823, 937, 1000, 1309, 2063, 3550, 3684
MabI ACCWGGT 1 cut(s) 1044
MaeII ACGT 6 cut(s) 1009, 1018, 1418, 1649, 3919, 3974
MaeIII GTNAC 9 cut(s) 123, 611, 1235, 1650, 1738, 2204, 2587, 2719, 3771
MflI RGATCY 8 cut(s) 298, 1072, 1600, 1615, 2041, 2926, 3687, 3860
MhlI GDGCHC 3 cut(s) 34, 2322, 3058
MlsI TGGCCA 1 cut(s) 2363
MluNI TGGCCA 1 cut(s) 2363
MlyI GAGTC 4 cut(s) 917, 1255, 1483, 2894
MmeI TCCRAC 8 cut(s) 326, 1511, 2073, 2539, 2737, 2931, 3174, 3659
Mox20I TGGCCA 1 cut(s) 2363
Mph1103I ATGCAT 3 cut(s) 544, 1167, 3502
MroXI GAANNNNTTC 3 cut(s) 1680, 2412, 3363
MscI TGGCCA 1 cut(s) 2363
MseI TTAA 8 cut(s) 432, 822, 1628, 2618, 3345, 3483, 3722, 3971
MslI CAYNNNNRTG 5 cut(s) 255, 384, 2423, 2668, 3252
Msp20I TGGCCA 1 cut(s) 2363
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 3 cut(s) 11, 704, 1496
MspR9I CCNGG 9 cut(s) 471, 598, 705, 1046, 1100, 1746, 3074, 3617, 3714
Mva1269I GAATGC 5 cut(s) 952, 1480, 1844, 2353, 3748
MvaI CCWGG 8 cut(s) 471, 598, 1046, 1100, 1746, 3074, 3617, 3714
MvnI CGCG 4 cut(s) 20, 1143, 1587, 2700
NciI CCSGG 1 cut(s) 705
NdeI CATATG 3 cut(s) 582, 2110, 3184
NmeAIII GCCGAG 1 cut(s) 3454
NmuCI GTSAC 5 cut(s) 123, 611, 1650, 1738, 2719
NsiI ATGCAT 3 cut(s) 544, 1167, 3502
NspI RCATGY 6 cut(s) 1165, 2189, 2339, 2652, 2762, 3504
PaeI GCATGC 2 cut(s) 2652, 3504
PagI TCATGA 2 cut(s) 2548, 3798
PaqCI CACCTGC 1 cut(s) 3433
PasI CCCWGGG 1 cut(s) 1099
PceI AGGCCT 1 cut(s) 760
PciI ACATGT 2 cut(s) 2185, 2335
PcsI WCGNNNNNNNCGW 1 cut(s) 1015
PctI GAATGC 5 cut(s) 952, 1480, 1844, 2353, 3748
PdmI GAANNNNTTC 3 cut(s) 1680, 2412, 3363
Pfl23II CGTACG 1 cut(s) 1144
PleI GAGTC 4 cut(s) 916, 1255, 1483, 2893
PmaCI CACGTG 1 cut(s) 1019
PmlI CACGTG 1 cut(s) 1019
PpsI GAGTC 4 cut(s) 916, 1255, 1483, 2893
Ppu21I YACGTR 1 cut(s) 1019
PpuMI RGGWCCY 1 cut(s) 1205
PscI ACATGT 2 cut(s) 2185, 2335
PshAI GACNNNNGTC 1 cut(s) 1648
Psp124BI GAGCTC 1 cut(s) 3058
Psp5II RGGWCCY 1 cut(s) 1205
Psp6I CCWGG 8 cut(s) 469, 596, 1044, 1098, 1744, 3072, 3615, 3712
PspCI CACGTG 1 cut(s) 1019
PspEI GGTNACC 2 cut(s) 611, 1235
PspFI CCCAGC 2 cut(s) 1173, 1529
PspGI CCWGG 8 cut(s) 469, 596, 1044, 1098, 1744, 3072, 3615, 3712
PspLI CGTACG 1 cut(s) 1144
PspPI GGNCC 8 cut(s) 1205, 1643, 2095, 2299, 2695, 3410, 3473, 3556
PspPPI RGGWCCY 1 cut(s) 1205
PstI CTGCAG 3 cut(s) 955, 2053, 2839
PstNI CAGNNNCTG 3 cut(s) 1733, 2980, 3413
PsuI RGATCY 8 cut(s) 298, 1072, 1600, 1615, 2041, 2926, 3687, 3860
RsaI GTAC 6 cut(s) 889, 1146, 1408, 1689, 1764, 3435
RsaNI GTAC 6 cut(s) 888, 1145, 1407, 1688, 1763, 3434
RseI CAYNNNNRTG 5 cut(s) 255, 384, 2423, 2668, 3252
SacI GAGCTC 1 cut(s) 3058
SaqAI TTAA 8 cut(s) 432, 822, 1628, 2618, 3345, 3483, 3722, 3971
Sau96I GGNCC 8 cut(s) 1205, 1643, 2095, 2299, 2695, 3410, 3473, 3556
SchI GAGTC 4 cut(s) 917, 1255, 1483, 2894
ScrFI CCNGG 9 cut(s) 471, 598, 705, 1046, 1100, 1746, 3074, 3617, 3714
SduI GDGCHC 3 cut(s) 34, 2322, 3058
SexAI ACCWGGT 1 cut(s) 1044
SfcI CTRYAG 7 cut(s) 951, 1199, 1659, 2049, 2142, 2658, 2835
SinI GGWCC 5 cut(s) 1205, 1643, 2095, 2299, 2695
SmiMI CAYNNNNRTG 5 cut(s) 255, 384, 2423, 2668, 3252
SmlI CTYRAG 2 cut(s) 812, 1558
SmoI CTYRAG 2 cut(s) 812, 1558
SpeI ACTAGT 2 cut(s) 277, 3640
SphI GCATGC 2 cut(s) 2652, 3504
SseBI AGGCCT 1 cut(s) 760
SspI AATATT 2 cut(s) 592, 3198
SstI GAGCTC 1 cut(s) 3058
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 9 cut(s) 469, 596, 703, 1044, 1098, 1744, 3072, 3615, 3712
StyI CCWWGG 2 cut(s) 1619, 2593
TaiI ACGT 6 cut(s) 1012, 1021, 1421, 1652, 3922, 3977
TaqII GACCGA 1 cut(s) 3551
TatI WGTACW 3 cut(s) 887, 1687, 1762
TauI GCSGC 5 cut(s) 8, 20, 56, 3748, 3968
Tru1I TTAA 8 cut(s) 432, 822, 1628, 2618, 3345, 3483, 3722, 3971
Tru9I TTAA 8 cut(s) 432, 822, 1628, 2618, 3345, 3483, 3722, 3971
TseFI GTSAC 5 cut(s) 123, 611, 1650, 1738, 2719
TseI GCWGC 9 cut(s) 14, 56, 836, 950, 1013, 1322, 2051, 3538, 3697
Tsp45I GTSAC 5 cut(s) 123, 611, 1650, 1738, 2719
TspGWI ACGGA 4 cut(s) 965, 2094, 2179, 3143
VpaK11BI GGWCC 5 cut(s) 1205, 1643, 2095, 2299, 2695
XapI RAATTY 9 cut(s) 189, 1063, 1335, 1630, 2309, 2410, 3172, 3660, 3874
XceI RCATGY 6 cut(s) 1165, 2189, 2339, 2652, 2762, 3504
XcmI CCANNNNNNNNNTGG 1 cut(s) 2521
XmiI GTMKAC 2 cut(s) 577, 2476
XmnI GAANNNNTTC 3 cut(s) 1680, 2412, 3363
Zsp2I ATGCAT 3 cut(s) 544, 1167, 3502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.