isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G27595 |
| fragaria_vesca | FvH4_5g33710 FvH4_5g33710 FvH4_5g33710 FvH4_5g33710 FvH4_5g33710 FvH4_5g33710 FvH4_6g26440 |
| malus_domestica | MD15G1393300.v1.1 |
| prunus_persica | Prupe.1G541600_v2.0.a1 Prupe.1G541600_v2.0.a1 Prupe.1G541600_v2.0.a1 Prupe.1G541600_v2.0.a1 |
| pyrus_communis | pycom15g35360 |
| rosa_chinensis | RchiOBHm_Chr7g0232721 |
| rosa_laevigata | RLG00000001314 |
| rosa_multiflora | Rmu_sc0002147.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00227950 |
| rosa_rugosa | Rorug07G0276100 Rorug07G0276100 Rorug07G0276100 |
| rosa_samantha | Rh7AG430900 Rh7BG403900 Rh7CG449500 Rh7DG420500 |
| rosa_wichuraiana | Rw7G035590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2489 |
| AarI | CACCTGC | 1 cut(s) | 2818 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2602 |
| Acc36I | ACCTGC | 2 cut(s) | 2818, 2917 |
| AccB1I | GGYRCC | 1 cut(s) | 140 |
| AccI | GTMKAC | 2 cut(s) | 1852, 3194 |
| AccII | CGCG | 2 cut(s) | 385, 668 |
| AccIII | TCCGGA | 1 cut(s) | 2291 |
| AciI | CCGC | 6 cut(s) | 343, 785, 1631, 2008, 3167, 3296 |
| AclWI | GGATC | 9 cut(s) | 164, 983, 995, 1008, 1010, 1023, 1473, 2531, 2788 |
| AcoI | YGGCCR | 3 cut(s) | 741, 1228, 2009 |
| AcsI | RAATTY | 7 cut(s) | 33, 43, 708, 2147, 2281, 2296, 2509 |
| AcuI | CTGAAG | 7 cut(s) | 53, 699, 903, 1287, 1470, 2373, 2759 |
| AcyI | GRCGYC | 1 cut(s) | 196 |
| AfaI | GTAC | 3 cut(s) | 256, 1721, 2392 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 437, 798, 1012, 1507, 1729, 1801, 2098, 2192, 2546 |
| AflII | CTTAAG | 1 cut(s) | 2867 |
| AjnI | CCWGG | 5 cut(s) | 444, 802, 1011, 1794, 3231 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2668, 2700 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1932, 1964 |
| Alw21I | GWGCWC | 1 cut(s) | 28 |
| Alw26I | GTCTC | 3 cut(s) | 870, 891, 2588 |
| AlwI | GGATC | 9 cut(s) | 164, 983, 995, 1008, 1010, 1023, 1473, 2531, 2788 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 926, 947, 1468, 2188 |
| Aor13HI | TCCGGA | 1 cut(s) | 2291 |
| AoxI | GGCC | 9 cut(s) | 125, 297, 741, 800, 1228, 1975, 2009, 2493, 2857 |
| ApaI | GGGCCC | 2 cut(s) | 301, 2497 |
| ApeKI | GCWGC | 9 cut(s) | 203, 326, 899, 1654, 2028, 2575, 2905, 2923, 3218 |
| ApoI | RAATTY | 7 cut(s) | 33, 43, 708, 2147, 2281, 2296, 2509 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2520 |
| AspA2I | CCTAGG | 1 cut(s) | 2497 |
| AspLEI | GCGC | 3 cut(s) | 668, 1593, 2910 |
| AsuHPI | GGTGA | 6 cut(s) | 456, 638, 643, 1047, 3315, 3326 |
| AsuII | TTCGAA | 1 cut(s) | 180 |
| AsuNHI | GCTAGC | 1 cut(s) | 3227 |
| AvaII | GGWCC | 6 cut(s) | 442, 1262, 1339, 2323, 2795, 3209 |
| AvrII | CCTAGG | 1 cut(s) | 2497 |
| AxyI | CCTNAGG | 1 cut(s) | 1473 |
| BaeGI | GKGCMC | 3 cut(s) | 301, 2443, 2497 |
| BalI | TGGCCA | 1 cut(s) | 1230 |
| BamHI | GGATCC | 2 cut(s) | 1000, 1015 |
| BanI | GGYRCC | 1 cut(s) | 140 |
| BanII | GRGCYC | 3 cut(s) | 28, 301, 2497 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3232, 3264 |
| BauI | CACGAG | 1 cut(s) | 1320 |
| BbsI | GAAGAC | 2 cut(s) | 59, 2676 |
| Bbv12I | GWGCWC | 1 cut(s) | 28 |
| BbvI | GCAGC | 9 cut(s) | 190, 313, 886, 1641, 2015, 2562, 2917, 2935, 3205 |
| BccI | CCATC | 9 cut(s) | 617, 735, 1091, 1253, 1731, 2231, 2837, 2849, 2947 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2010, 2044 |
| BciT130I | CCWGG | 5 cut(s) | 446, 804, 1013, 1796, 3233 |
| BciVI | GTATCC | 3 cut(s) | 221, 571, 1063 |
| BclI | TGATCA | 5 cut(s) | 331, 409, 1411, 1930, 2959 |
| BcoDI | GTCTC | 3 cut(s) | 870, 891, 2588 |
| BfmI | CTRYAG | 2 cut(s) | 2811, 3339 |
| BfrI | CTTAAG | 1 cut(s) | 2867 |
| BfuAI | ACCTGC | 2 cut(s) | 2818, 2917 |
| BfuI | GTATCC | 3 cut(s) | 221, 571, 1063 |
| BglII | AGATCT | 1 cut(s) | 1306 |
| BlnI | CCTAGG | 1 cut(s) | 2497 |
| BlpI | GCTNAGC | 1 cut(s) | 2890 |
| Bme1390I | CCNGG | 5 cut(s) | 446, 804, 1013, 1796, 3233 |
| Bme18I | GGWCC | 6 cut(s) | 442, 1262, 1339, 2323, 2795, 3209 |
| BmrFI | CCNGG | 5 cut(s) | 446, 804, 1013, 1796, 3233 |
| BmrI | ACTGGG | 2 cut(s) | 257, 2232 |
| BmtI | GCTAGC | 1 cut(s) | 3231 |
| BmuI | ACTGGG | 2 cut(s) | 257, 2232 |
| BpiI | GAAGAC | 2 cut(s) | 59, 2676 |
| BpmI | CTGGAG | 4 cut(s) | 873, 1748, 1838, 2011 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2890 |
| Bpu14I | TTCGAA | 1 cut(s) | 180 |
| BpuEI | CTTGAG | 2 cut(s) | 1132, 2574 |
| BsaBI | GATNNNNATC | 1 cut(s) | 168 |
| BsaHI | GRCGYC | 1 cut(s) | 196 |
| BsaI | GGTCTC | 1 cut(s) | 870 |
| BsaJI | CCNNGG | 8 cut(s) | 639, 792, 803, 1019, 1833, 1978, 2497, 2720 |
| BsaWI | WCCGGW | 1 cut(s) | 2291 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 437, 798, 1012, 1507, 1729, 1801, 2098, 2192, 2546 |
| Bse21I | CCTNAGG | 1 cut(s) | 1473 |
| Bse3DI | GCAATG | 1 cut(s) | 545 |
| Bse8I | GATNNNNATC | 1 cut(s) | 168 |
| BseAI | TCCGGA | 1 cut(s) | 2291 |
| BseBI | CCWGG | 5 cut(s) | 446, 804, 1013, 1796, 3233 |
| BseDI | CCNNGG | 8 cut(s) | 639, 792, 803, 1019, 1833, 1978, 2497, 2720 |
| BseGI | GGATG | 9 cut(s) | 328, 412, 727, 1049, 1264, 1639, 2073, 2662, 2829 |
| BseJI | GATNNNNATC | 1 cut(s) | 168 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 437, 798, 1012, 1507, 1729, 1801, 2098, 2192, 2546 |
| BseMI | GCAATG | 1 cut(s) | 545 |
| BseMII | CTCAG | 6 cut(s) | 1464, 1634, 1985, 2205, 2838, 2904 |
| BseRI | GAGGAG | 1 cut(s) | 1262 |
| BseSI | GKGCMC | 3 cut(s) | 301, 2443, 2497 |
| BseXI | GCAGC | 9 cut(s) | 190, 313, 886, 1641, 2015, 2562, 2917, 2935, 3205 |
| BseYI | CCCAGC | 2 cut(s) | 317, 3126 |
| BsgI | GTGCAG | 3 cut(s) | 138, 902, 2742 |
| Bsh1236I | CGCG | 2 cut(s) | 385, 668 |
| Bsh1285I | CGRYCG | 1 cut(s) | 398 |
| BshFI | GGCC | 9 cut(s) | 127, 299, 743, 802, 1230, 1977, 2011, 2495, 2859 |
| BshNI | GGYRCC | 1 cut(s) | 140 |
| BsiEI | CGRYCG | 1 cut(s) | 398 |
| BsiHKAI | GWGCWC | 1 cut(s) | 28 |
| BsiSI | CCGG | 1 cut(s) | 2292 |
| BslFI | GGGAC | 4 cut(s) | 455, 1352, 1967, 3195 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 437, 798, 1012, 1507, 1729, 1801, 2098, 2192, 2546 |
| BsmAI | GTCTC | 3 cut(s) | 870, 891, 2588 |
| BsmFI | GGGAC | 4 cut(s) | 455, 1352, 1967, 3195 |
| BsmI | GAATGC | 4 cut(s) | 319, 1417, 2203, 3087 |
| BsnI | GGCC | 9 cut(s) | 127, 299, 743, 802, 1230, 1977, 2011, 2495, 2859 |
| Bso31I | GGTCTC | 1 cut(s) | 870 |
| Bsp119I | TTCGAA | 1 cut(s) | 180 |
| Bsp120I | GGGCCC | 2 cut(s) | 297, 2493 |
| Bsp1286I | GDGCHC | 4 cut(s) | 28, 301, 2443, 2497 |
| Bsp13I | TCCGGA | 1 cut(s) | 2291 |
| Bsp1407I | TGTACA | 1 cut(s) | 2390 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2890 |
| BspACI | CCGC | 6 cut(s) | 343, 785, 1631, 2008, 3167, 3296 |
| BspANI | GGCC | 9 cut(s) | 127, 299, 743, 802, 1230, 1977, 2011, 2495, 2859 |
| BspCNI | CTCAG | 6 cut(s) | 1465, 1633, 1984, 2206, 2839, 2903 |
| BspEI | TCCGGA | 1 cut(s) | 2291 |
| BspFNI | CGCG | 2 cut(s) | 385, 668 |
| BspHI | TCATGA | 3 cut(s) | 496, 529, 3377 |
| BspMAI | CTGCAG | 1 cut(s) | 2815 |
| BspMI | ACCTGC | 2 cut(s) | 2818, 2917 |
| BspOI | GCTAGC | 1 cut(s) | 3231 |
| BspPI | GGATC | 9 cut(s) | 164, 983, 995, 1008, 1010, 1023, 1473, 2531, 2788 |
| BspQI | GCTCTTC | 1 cut(s) | 2739 |
| BspT104I | TTCGAA | 1 cut(s) | 180 |
| BspT107I | GGYRCC | 1 cut(s) | 140 |
| BspTI | CTTAAG | 1 cut(s) | 2867 |
| BspTNI | GGTCTC | 1 cut(s) | 870 |
| BsrDI | GCAATG | 1 cut(s) | 545 |
| BsrGI | TGTACA | 1 cut(s) | 2390 |
| BssECI | CCNNGG | 8 cut(s) | 639, 792, 803, 1019, 1833, 1978, 2497, 2720 |
| BssNAI | GTATAC | 1 cut(s) | 3195 |
| BssNI | GRCGYC | 1 cut(s) | 196 |
| BssSI | CACGAG | 1 cut(s) | 1320 |
| BssT1I | CCWWGG | 3 cut(s) | 792, 1978, 2497 |
| Bst1107I | GTATAC | 1 cut(s) | 3195 |
| Bst2BI | CACGAG | 1 cut(s) | 1320 |
| Bst2UI | CCWGG | 5 cut(s) | 446, 804, 1013, 1796, 3233 |
| Bst6I | CTCTTC | 3 cut(s) | 474, 2739, 2982 |
| BstACI | GRCGYC | 1 cut(s) | 196 |
| BstAFI | CTTAAG | 1 cut(s) | 2867 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1604, 3011 |
| BstAUI | TGTACA | 1 cut(s) | 2390 |
| BstBI | TTCGAA | 1 cut(s) | 180 |
| BstC8I | GCNNGC | 4 cut(s) | 675, 2460, 2887, 3229 |
| BstDEI | CTNAG | 8 cut(s) | 1473, 1620, 1806, 1971, 2032, 2214, 2847, 2890 |
| BstDSI | CCRYGG | 2 cut(s) | 639, 1019 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 435, 796, 2544 |
| BstF5I | GGATG | 9 cut(s) | 328, 412, 727, 1049, 1264, 1639, 2073, 2662, 2829 |
| BstFNI | CGCG | 2 cut(s) | 385, 668 |
| BstHHI | GCGC | 3 cut(s) | 668, 1593, 2910 |
| BstMAI | GTCTC | 3 cut(s) | 870, 891, 2588 |
| BstMCI | CGRYCG | 1 cut(s) | 398 |
| BstNI | CCWGG | 5 cut(s) | 446, 804, 1013, 1796, 3233 |
| BstSCI | CCNGG | 5 cut(s) | 444, 802, 1011, 1794, 3231 |
| BstSFI | CTRYAG | 2 cut(s) | 2811, 3339 |
| BstSLI | GKGCMC | 3 cut(s) | 301, 2443, 2497 |
| BstUI | CGCG | 2 cut(s) | 385, 668 |
| BstV1I | GCAGC | 9 cut(s) | 190, 313, 886, 1641, 2015, 2562, 2917, 2935, 3205 |
| BstV2I | GAAGAC | 2 cut(s) | 59, 2676 |
| BstX2I | RGATCY | 5 cut(s) | 988, 1000, 1015, 1306, 1465 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3093 |
| BstYI | RGATCY | 5 cut(s) | 988, 1000, 1015, 1306, 1465 |
| BstZ17I | GTATAC | 1 cut(s) | 3195 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1473 |
| BsuI | GTATCC | 3 cut(s) | 221, 571, 1063 |
| BsuRI | GGCC | 9 cut(s) | 127, 299, 743, 802, 1230, 1977, 2011, 2495, 2859 |
| BtgI | CCRYGG | 2 cut(s) | 639, 1019 |
| BtsCI | GGATG | 9 cut(s) | 328, 412, 727, 1049, 1264, 1639, 2073, 2662, 2829 |
| BtsI | GCAGTG | 1 cut(s) | 1806 |
| BtsIMutI | CAGTG | 6 cut(s) | 270, 1143, 1806, 2220, 2337, 2622 |
| BveI | ACCTGC | 2 cut(s) | 2818, 2917 |
| Cac8I | GCNNGC | 4 cut(s) | 675, 2460, 2887, 3229 |
| CaiI | CAGNNNCTG | 4 cut(s) | 926, 947, 1468, 2188 |
| CciI | TCATGA | 3 cut(s) | 496, 529, 3377 |
| CfoI | GCGC | 3 cut(s) | 668, 1593, 2910 |
| CseI | GACGC | 1 cut(s) | 204 |
| CsiI | ACCWGGT | 1 cut(s) | 444 |
| Csp6I | GTAC | 3 cut(s) | 255, 1720, 2391 |
| CviAII | CATG | 9 cut(s) | 7, 200, 497, 530, 1568, 1697, 1937, 3143, 3378 |
| CviQI | GTAC | 3 cut(s) | 255, 1720, 2391 |
| DdeI | CTNAG | 8 cut(s) | 1473, 1620, 1806, 1971, 2032, 2214, 2847, 2890 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2602 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2602 |
| EaeI | YGGCCR | 3 cut(s) | 741, 1228, 2009 |
| Eam1104I | CTCTTC | 3 cut(s) | 474, 2739, 2982 |
| EarI | CTCTTC | 3 cut(s) | 474, 2739, 2982 |
| EciI | GGCGGA | 1 cut(s) | 332 |
| Ecl136II | GAGCTC | 1 cut(s) | 26 |
| Eco130I | CCWWGG | 3 cut(s) | 792, 1978, 2497 |
| Eco24I | GRGCYC | 3 cut(s) | 28, 301, 2497 |
| Eco31I | GGTCTC | 1 cut(s) | 870 |
| Eco32I | GATATC | 1 cut(s) | 2038 |
| Eco47I | GGWCC | 6 cut(s) | 442, 1262, 1339, 2323, 2795, 3209 |
| Eco53kI | GAGCTC | 1 cut(s) | 26 |
| Eco57I | CTGAAG | 7 cut(s) | 53, 699, 903, 1287, 1470, 2373, 2759 |
| Eco81I | CCTNAGG | 1 cut(s) | 1473 |
| EcoICRI | GAGCTC | 1 cut(s) | 26 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 435, 796, 2544 |
| EcoO109I | RGGNCCY | 8 cut(s) | 297, 298, 442, 1339, 1975, 2493, 2494, 3209 |
| EcoRI | GAATTC | 1 cut(s) | 33 |
| EcoRII | CCWGG | 5 cut(s) | 444, 802, 1011, 1794, 3231 |
| EcoRV | GATATC | 1 cut(s) | 2038 |
| EcoT14I | CCWWGG | 3 cut(s) | 792, 1978, 2497 |
| EcoT38I | GRGCYC | 3 cut(s) | 28, 301, 2497 |
| ErhI | CCWWGG | 3 cut(s) | 792, 1978, 2497 |
| FaeI | CATG | 9 cut(s) | 10, 203, 500, 533, 1571, 1700, 1940, 3146, 3381 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1326, 1358, 3198, 3230, 3237, 3269 |
| FaqI | GGGAC | 4 cut(s) | 455, 1352, 1967, 3195 |
| FatI | CATG | 9 cut(s) | 6, 199, 496, 529, 1567, 1696, 1936, 3142, 3377 |
| FauI | CCCGC | 1 cut(s) | 3174 |
| FauNDI | CATATG | 1 cut(s) | 3223 |
| FbaI | TGATCA | 5 cut(s) | 331, 409, 1411, 1930, 2959 |
| FblI | GTMKAC | 2 cut(s) | 1852, 3194 |
| FokI | GGATG | 9 cut(s) | 335, 419, 714, 1036, 1271, 1646, 2060, 2669, 2816 |
| FriOI | GRGCYC | 3 cut(s) | 28, 301, 2497 |
| GlaI | GCGC | 3 cut(s) | 667, 1592, 2909 |
| GsaI | CCCAGC | 2 cut(s) | 321, 3130 |
| GsuI | CTGGAG | 4 cut(s) | 873, 1748, 1838, 2011 |
| HaeIII | GGCC | 9 cut(s) | 127, 299, 743, 802, 1230, 1977, 2011, 2495, 2859 |
| HapII | CCGG | 1 cut(s) | 2292 |
| HgaI | GACGC | 1 cut(s) | 204 |
| HhaI | GCGC | 3 cut(s) | 668, 1593, 2910 |
| Hin1I | GRCGYC | 1 cut(s) | 196 |
| Hin1II | CATG | 9 cut(s) | 10, 203, 500, 533, 1571, 1700, 1940, 3146, 3381 |
| Hin6I | GCGC | 3 cut(s) | 666, 1591, 2908 |
| HinP1I | GCGC | 3 cut(s) | 666, 1591, 2908 |
| HincII | GTYRAC | 3 cut(s) | 592, 1497, 2337 |
| HindII | GTYRAC | 3 cut(s) | 592, 1497, 2337 |
| HindIII | AAGCTT | 3 cut(s) | 1118, 3089, 3246 |
| HpaII | CCGG | 1 cut(s) | 2292 |
| HphI | GGTGA | 6 cut(s) | 456, 638, 643, 1047, 3315, 3326 |
| Hpy166II | GTNNAC | 9 cut(s) | 133, 255, 592, 931, 1497, 1853, 2220, 2337, 3195 |
| Hpy8I | GTNNAC | 9 cut(s) | 133, 255, 592, 931, 1497, 1853, 2220, 2337, 3195 |
| Hpy99I | CGWCG | 2 cut(s) | 1011, 2608 |
| HpyF3I | CTNAG | 8 cut(s) | 1473, 1620, 1806, 1971, 2032, 2214, 2847, 2890 |
| Hsp92I | GRCGYC | 1 cut(s) | 196 |
| Hsp92II | CATG | 9 cut(s) | 10, 203, 500, 533, 1571, 1700, 1940, 3146, 3381 |
| HspAI | GCGC | 3 cut(s) | 666, 1591, 2908 |
| Kpn2I | TCCGGA | 1 cut(s) | 2291 |
| Ksp22I | TGATCA | 5 cut(s) | 331, 409, 1411, 1930, 2959 |
| LguI | GCTCTTC | 1 cut(s) | 2739 |
| LmnI | GCTCC | 3 cut(s) | 643, 1510, 3365 |
| Lsp1109I | GCAGC | 9 cut(s) | 190, 313, 886, 1641, 2015, 2562, 2917, 2935, 3205 |
| MabI | ACCWGGT | 1 cut(s) | 444 |
| MaeIII | GTNAC | 8 cut(s) | 631, 1138, 1162, 1966, 2659, 3150, 3156, 3321 |
| MfeI | CAATTG | 5 cut(s) | 84, 97, 1211, 2582, 3006 |
| MflI | RGATCY | 5 cut(s) | 988, 1000, 1015, 1306, 1465 |
| MhlI | GDGCHC | 4 cut(s) | 28, 301, 2443, 2497 |
| MlsI | TGGCCA | 1 cut(s) | 1230 |
| MluNI | TGGCCA | 1 cut(s) | 1230 |
| MmeI | TCCRAC | 2 cut(s) | 893, 2116 |
| Mox20I | TGGCCA | 1 cut(s) | 1230 |
| MroI | TCCGGA | 1 cut(s) | 2291 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2520 |
| MscI | TGGCCA | 1 cut(s) | 1230 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1566, 2637, 2675 |
| Msp20I | TGGCCA | 1 cut(s) | 1230 |
| MspA1I | CMGCKG | 1 cut(s) | 59 |
| MspCI | CTTAAG | 1 cut(s) | 2867 |
| MspI | CCGG | 1 cut(s) | 2292 |
| MspR9I | CCNGG | 5 cut(s) | 446, 804, 1013, 1796, 3233 |
| MunI | CAATTG | 5 cut(s) | 84, 97, 1211, 2582, 3006 |
| Mva1269I | GAATGC | 4 cut(s) | 319, 1417, 2203, 3087 |
| MvaI | CCWGG | 5 cut(s) | 446, 804, 1013, 1796, 3233 |
| MvnI | CGCG | 2 cut(s) | 385, 668 |
| NdeI | CATATG | 1 cut(s) | 3223 |
| NheI | GCTAGC | 1 cut(s) | 3227 |
| NlaIII | CATG | 9 cut(s) | 10, 203, 500, 533, 1571, 1700, 1940, 3146, 3381 |
| NmeAIII | GCCGAG | 2 cut(s) | 799, 2701 |
| NmuCI | GTSAC | 6 cut(s) | 631, 1138, 1162, 1966, 2659, 3321 |
| NspV | TTCGAA | 1 cut(s) | 180 |
| PagI | TCATGA | 3 cut(s) | 496, 529, 3377 |
| PaqCI | CACCTGC | 1 cut(s) | 2818 |
| PciSI | GCTCTTC | 1 cut(s) | 2739 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3317, 3326 |
| PctI | GAATGC | 4 cut(s) | 319, 1417, 2203, 3087 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2520 |
| PpuMI | RGGWCCY | 3 cut(s) | 442, 1339, 3209 |
| PsiI | TTATAA | 1 cut(s) | 2489 |
| Psp124BI | GAGCTC | 1 cut(s) | 28 |
| Psp5II | RGGWCCY | 3 cut(s) | 442, 1339, 3209 |
| Psp6I | CCWGG | 5 cut(s) | 444, 802, 1011, 1794, 3231 |
| PspFI | CCCAGC | 2 cut(s) | 317, 3126 |
| PspGI | CCWGG | 5 cut(s) | 444, 802, 1011, 1794, 3231 |
| PspOMI | GGGCCC | 2 cut(s) | 297, 2493 |
| PspPPI | RGGWCCY | 3 cut(s) | 442, 1339, 3209 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1772, 1804 |
| PstI | CTGCAG | 1 cut(s) | 2815 |
| PstNI | CAGNNNCTG | 4 cut(s) | 926, 947, 1468, 2188 |
| PsuI | RGATCY | 5 cut(s) | 988, 1000, 1015, 1306, 1465 |
| PvuII | CAGCTG | 1 cut(s) | 59 |
| RsaI | GTAC | 3 cut(s) | 256, 1721, 2392 |
| RsaNI | GTAC | 3 cut(s) | 255, 1720, 2391 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1566, 2637, 2675 |
| SacI | GAGCTC | 1 cut(s) | 28 |
| SapI | GCTCTTC | 1 cut(s) | 2739 |
| ScrFI | CCNGG | 5 cut(s) | 446, 804, 1013, 1796, 3233 |
| SduI | GDGCHC | 4 cut(s) | 28, 301, 2443, 2497 |
| SexAI | ACCWGGT | 1 cut(s) | 444 |
| SfcI | CTRYAG | 2 cut(s) | 2811, 3339 |
| SfuI | TTCGAA | 1 cut(s) | 180 |
| SinI | GGWCC | 6 cut(s) | 442, 1262, 1339, 2323, 2795, 3209 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1566, 2637, 2675 |
| SmlI | CTYRAG | 3 cut(s) | 1111, 2589, 2867 |
| SmoI | CTYRAG | 3 cut(s) | 1111, 2589, 2867 |
| SsiI | CCGC | 6 cut(s) | 343, 785, 1631, 2008, 3167, 3296 |
| SstI | GAGCTC | 1 cut(s) | 28 |
| StyD4I | CCNGG | 5 cut(s) | 444, 802, 1011, 1794, 3231 |
| StyI | CCWWGG | 3 cut(s) | 792, 1978, 2497 |
| TaqI | TCGA | 4 cut(s) | 180, 719, 1609, 2020 |
| TaqII | GACCGA | 1 cut(s) | 384 |
| TatI | WGTACW | 2 cut(s) | 254, 2390 |
| TauI | GCSGC | 2 cut(s) | 787, 2011 |
| TscAI | CASTG | 6 cut(s) | 270, 1150, 1806, 2227, 2337, 2629 |
| TseFI | GTSAC | 6 cut(s) | 631, 1138, 1162, 1966, 2659, 3321 |
| TseI | GCWGC | 9 cut(s) | 203, 326, 899, 1654, 2028, 2575, 2905, 2923, 3218 |
| Tsp45I | GTSAC | 6 cut(s) | 631, 1138, 1162, 1966, 2659, 3321 |
| TspGWI | ACGGA | 1 cut(s) | 609 |
| TspRI | CASTG | 6 cut(s) | 270, 1150, 1806, 2227, 2337, 2629 |
| Vha464I | CTTAAG | 1 cut(s) | 2867 |
| VpaK11BI | GGWCC | 6 cut(s) | 442, 1262, 1339, 2323, 2795, 3209 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 435, 796, 2544 |
| XapI | RAATTY | 7 cut(s) | 33, 43, 708, 2147, 2281, 2296, 2509 |
| XbaI | TCTAGA | 2 cut(s) | 1402, 3257 |
| XmaJI | CCTAGG | 1 cut(s) | 2497 |
| XmiI | GTMKAC | 2 cut(s) | 1852, 3194 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2520 |