AT1G27695

Keratin-associated protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
9639024 .. 9640204
1181 bp
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UTR
Exon/CDS
Intron
AT1G27695.2

Sequence Viewer

Length: 276 bp
ATGGTGCTCTCTGACTTCACTGGAGTCGGTGTTGGATTTGGGTTCGGTGTTGGTTGTGGATTTGGCGTTGGATGGGGTTTTGGAGGAATGCCTATGAACATCTTAGGTGTTGGTGCTGGTGGCGGTTGCGGGGTGGGTTTGGGCCTCGGGTGGGGTTTCGGGACTGCGTTTGGGAGTCACTATCGTTCATCTAGACTTACATTTCAAGGCATCGAGTTAGAGACTGCCGATAAACGGGAGGAGGTGGTGGCTAACATGTCCAAAAACTCCACTTAA

Protein Analysis

91

Amino Acids

9.17

Weight (kDa)

5.6

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27695 AT1G27695
fragaria_vesca FvH4_2g33370 FvH4_2g33370 FvH4_2g33370
malus_domestica MD08G1088300.v1.1
prunus_persica Prupe.1G426000_v2.0.a1 Prupe.1G426000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0309211
rosa_roxburghii Rroxscaffold_7G00159560
rosa_rugosa Rorug06G0370300
rosa_samantha Rh6BG492600 Rh6DG484100
rosa_wichuraiana Rw6G042100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 123, 129
AfiI CCNNNNNNNGG 2 cut(s) 151, 234
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 1 cut(s) 206
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 142
BmsI GCATC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 234
Bse1I ACTGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 151, 234
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 254
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 2 cut(s) 151, 234
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 175
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 9
BspACI CCGC 2 cut(s) 123, 129
BspANI GGCC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 77
BstMAI GTCTC 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 259
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 142
CviAII CATG 1 cut(s) 256
CviJI RGCY 2 cut(s) 144, 251
CviKI_1 RGCY 2 cut(s) 144, 251
DdeI CTNAG 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 146
FaeI CATG 1 cut(s) 259
FaiI YATR 2 cut(s) 95, 257
FaqI GGGAC 1 cut(s) 175
FatI CATG 1 cut(s) 255
FauI CCCGC 1 cut(s) 122
FokI GGATG 1 cut(s) 84
FspBI CTAG 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 1 cut(s) 259
HinfI GANTC 2 cut(s) 24, 175
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 160, 192
HpyF3I CTNAG 1 cut(s) 103
Hsp92II CATG 1 cut(s) 259
LpnPI CCDG 2 cut(s) 6, 102
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 9
MlyI GAGTC 2 cut(s) 33, 184
MmeI TCCRAC 2 cut(s) 13, 49
MnlI CCTC 4 cut(s) 77, 155, 232, 235
MseI TTAA 1 cut(s) 274
Mva1269I GAATGC 1 cut(s) 93
NlaIII CATG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 176
NspI RCATGY 1 cut(s) 259
PciI ACATGT 1 cut(s) 255
PctI GAATGC 1 cut(s) 93
PleI GAGTC 2 cut(s) 32, 183
PpsI GAGTC 2 cut(s) 32, 183
PscI ACATGT 1 cut(s) 255
PspPI GGNCC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 2 cut(s) 33, 184
SduI GDGCHC 1 cut(s) 9
SetI ASST 2 cut(s) 109, 246
SfaNI GCATC 1 cut(s) 219
SsiI CCGC 2 cut(s) 123, 129
SspMI CTAG 1 cut(s) 192
TaqI TCGA 1 cut(s) 213
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 110, 177
TspRI CASTG 1 cut(s) 25
XbaI TCTAGA 1 cut(s) 191
XceI RCATGY 1 cut(s) 259
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.