Rh6BG492600

Keratin-associated protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
69523984 .. 69525286
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG492600.1

Sequence Viewer

Length: 273 bp
ATGGTGATTACCAACTTTAATGGAGCCGGGGTTGGATTTGGATTCGGCGTTGGCTGCGGTTTTGGGGTTGGATGGGGTTTTGGAGGCACACCTTTGAATATCTTGGGTCTTGGTGTAGGTGGAGGCTGTGGTGTTGGACTGGGTCTTGGATGGGGCTTTGGCACTGCATATGGTAGTCAGTATCATTCATCTGGGGTCACATTTCACGGTATAGAGGTCGGCAAAAAGGATCAAGAACAGAAAAACAATCAGGACGTTCATGCTTCGCAATAG

Protein Analysis

90

Amino Acids

8.98

Weight (kDa)

6.22

Isoelectric Point (pI)

21.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27695 AT1G27695
fragaria_vesca FvH4_2g33370 FvH4_2g33370 FvH4_2g33370
malus_domestica MD08G1088300.v1.1
prunus_persica Prupe.1G426000_v2.0.a1 Prupe.1G426000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0309211
rosa_roxburghii Rroxscaffold_7G00159560
rosa_rugosa Rorug06G0370300
rosa_samantha Rh6BG492600 Rh6DG484100
rosa_wichuraiana Rw6G042100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 237
AgsI TTSAA 1 cut(s) 97
AlwI GGATC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 16
BbvI GCAGC 1 cut(s) 41
BccI CCATC 2 cut(s) 66, 144
BcnI CCSGG 1 cut(s) 28
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 28
BmrI ACTGGG 1 cut(s) 149
BmuI ACTGGG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bse1I ACTGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 77, 155
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 27
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 209
BstF5I GGATG 2 cut(s) 77, 155
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 41
BtsCI GGATG 2 cut(s) 77, 155
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
CviAII CATG 1 cut(s) 260
CviJI RGCY 4 cut(s) 26, 54, 126, 156
CviKI_1 RGCY 4 cut(s) 26, 54, 126, 156
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
FaeI CATG 1 cut(s) 263
FaiI YATR 4 cut(s) 169, 171, 212, 261
FatI CATG 1 cut(s) 259
FauNDI CATATG 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 2 cut(s) 84, 162
Fsp4HI GCNGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 55
HapII CCGG 1 cut(s) 27
Hin1II CATG 1 cut(s) 263
HinfI GANTC 1 cut(s) 42
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 2 cut(s) 233, 251
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 4 cut(s) 40, 125, 177, 236
Lsp1109I GCAGC 1 cut(s) 41
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MmeI TCCRAC 3 cut(s) 13, 49, 115
MnlI CCTC 3 cut(s) 77, 116, 208
MseI TTAA 1 cut(s) 18
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 28
NdeI CATATG 1 cut(s) 169
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 42
PflFI GACNNNGTC 1 cut(s) 141
PkrI GCNGC 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 28
SetI ASST 4 cut(s) 94, 121, 219, 258
SsiI CCGC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 258
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 177, 248
TspRI CASTG 1 cut(s) 169
Tth111I GACNNNGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.