FvH4_2g33370

Keratin-associated protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
25049936 .. 25051401
1466 bp
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UTR
Exon/CDS
Intron
FvH4_2g33370.t1

Sequence Viewer

Length: 228 bp
ATGATGCTTGTGAGGTCAATGAATTTGGTTTTACTTGTAGGCAGGCACGCCTTTGAATATCTTGGGGCTTGGTGTGGAGGCTGTGGTGTTGGACTAGGTCTTGGATGGGGCTTTGGCACTGCATATGGTAGTCAGTATCATTCATCTGGGGTCACATTCCATGGTATAGAGGTTGGCAAAAAGGATCATGAACAGAAAAGCAATCAGGACGCTCATGCTTCACAATAG

Protein Analysis

76

Amino Acids

8.04

Weight (kDa)

6.95

Isoelectric Point (pI)

27.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27695 AT1G27695
fragaria_vesca FvH4_2g33370 FvH4_2g33370 FvH4_2g33370
malus_domestica MD08G1088300.v1.1
prunus_persica Prupe.1G426000_v2.0.a1 Prupe.1G426000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0309211
rosa_roxburghii Rroxscaffold_7G00159560
rosa_rugosa Rorug06G0370300
rosa_samantha Rh6BG492600 Rh6DG484100
rosa_wichuraiana Rw6G042100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 22
AgsI TTSAA 1 cut(s) 56
AlwI GGATC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 22
BccI CCATC 1 cut(s) 99
BfaI CTAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 110
Bsp143I GATC 1 cut(s) 184
Bsp19I CCATGG 1 cut(s) 160
BspHI TCATGA 1 cut(s) 187
BspPI GGATC 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 44, 48
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 110
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 110
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 44, 48
CciI TCATGA 1 cut(s) 187
CseI GACGC 1 cut(s) 218
CviAII CATG 3 cut(s) 161, 188, 215
CviJI RGCY 3 cut(s) 68, 81, 111
CviKI_1 RGCY 3 cut(s) 68, 81, 111
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 3 cut(s) 164, 191, 218
FaiI YATR 6 cut(s) 124, 126, 162, 167, 189, 216
FatI CATG 3 cut(s) 160, 187, 214
FauNDI CATATG 1 cut(s) 124
FokI GGATG 1 cut(s) 117
FspBI CTAG 1 cut(s) 95
HgaI GACGC 1 cut(s) 218
Hin1II CATG 3 cut(s) 164, 191, 218
Hpy188III TCNNGA 2 cut(s) 188, 206
HpyCH4V TGCA 1 cut(s) 122
Hsp92II CATG 3 cut(s) 164, 191, 218
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 3 cut(s) 28, 132, 191
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MluCI AATT 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 6, 71, 163
NcoI CCATGG 1 cut(s) 160
NdeI CATATG 1 cut(s) 124
NdeII GATC 1 cut(s) 184
NlaIII CATG 3 cut(s) 164, 191, 218
NmuCI GTSAC 1 cut(s) 151
PagI TCATGA 1 cut(s) 187
PflFI GACNNNGTC 1 cut(s) 96
PsyI GACNNNGTC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 184
SetI ASST 3 cut(s) 17, 100, 174
Sse9I AATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 160
TasI AATT 1 cut(s) 22
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 35, 132, 204
TspRI CASTG 1 cut(s) 124
Tth111I GACNNNGTC 1 cut(s) 96
XapI RAATTY 1 cut(s) 22
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.