Prupe.1G426000_v2.0.a1

Keratin-associated protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
36643691 .. 36645917
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G426000.1

Sequence Viewer

Length: 285 bp
ATGGTGCTTACCAACTTCAATGGAGCTGGCGTTGGATTTGGATTCGGTGTTGGCTGCGGGTTTGGCGTTGGATGGGGTTTCGGAGGCACACCGTTGAATTTCTTGGGCCTTGGTGTAGGTGGAGGTTGTGGGGTTGGTCTAGGTCTTGGATGGGGATTTGGCACCGCCTTTGGTAGTCAGTATCATTCATCTGGGGTCACATTCCAGGGCCTAGACTTCGGCAAGAAGGATCATGATGGTTTTGCTTTACAGAAAAACCACCAGGACAATCGTGCTTCGCGGTAG

Protein Analysis

95

Amino Acids

9.49

Weight (kDa)

7.86

Isoelectric Point (pI)

11.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27695 AT1G27695
fragaria_vesca FvH4_2g33370 FvH4_2g33370 FvH4_2g33370
malus_domestica MD08G1088300.v1.1
prunus_persica Prupe.1G426000_v2.0.a1 Prupe.1G426000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0309211
rosa_roxburghii Rroxscaffold_7G00159560
rosa_rugosa Rorug06G0370300
rosa_samantha Rh6BG492600 Rh6DG484100
rosa_wichuraiana Rw6G042100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AccII CGCG 1 cut(s) 280
AciI CCGC 3 cut(s) 57, 165, 280
AclWI GGATC 1 cut(s) 237
AcsI RAATTY 1 cut(s) 97
AgsI TTSAA 2 cut(s) 19, 97
AjnI CCWGG 2 cut(s) 204, 261
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 1 cut(s) 237
AoxI GGCC 2 cut(s) 106, 208
ApeKI GCWGC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 97
AspS9I GGNCC 2 cut(s) 106, 208
BanI GGYRCC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 41
BccI CCATC 3 cut(s) 66, 144, 230
BciT130I CCWGG 2 cut(s) 206, 263
BfaI CTAG 2 cut(s) 140, 212
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 206, 263
BmgT120I GGNCC 2 cut(s) 106, 208
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 206, 263
BsaJI CCNNGG 2 cut(s) 109, 205
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
BseBI CCWGG 2 cut(s) 206, 263
BseDI CCNNGG 2 cut(s) 109, 205
BseGI GGATG 2 cut(s) 77, 155
BseXI GCAGC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 2 cut(s) 108, 210
BshNI GGYRCC 1 cut(s) 161
BsnI GGCC 2 cut(s) 108, 210
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 3 cut(s) 57, 165, 280
BspANI GGCC 2 cut(s) 108, 210
BspFNI CGCG 1 cut(s) 280
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 109, 205
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 206, 263
Bst4CI ACNGT 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 28
BstF5I GGATG 2 cut(s) 77, 155
BstFNI CGCG 1 cut(s) 280
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstNI CCWGG 2 cut(s) 206, 263
BstSCI CCNGG 2 cut(s) 204, 261
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 41
BsuRI GGCC 2 cut(s) 108, 210
BtsCI GGATG 2 cut(s) 77, 155
Cac8I GCNNGC 1 cut(s) 28
CciI TCATGA 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 106, 208
CviAII CATG 1 cut(s) 233
CviJI RGCY 4 cut(s) 26, 54, 108, 210
CviKI_1 RGCY 4 cut(s) 26, 54, 108, 210
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 204, 261
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 236
FaiI YATR 1 cut(s) 234
FatI CATG 1 cut(s) 232
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 2 cut(s) 84, 162
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 2 cut(s) 140, 212
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 2 cut(s) 108, 210
Hin1II CATG 1 cut(s) 236
HinfI GANTC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 6 cut(s) 12, 177, 191, 218, 248, 275
Lsp1109I GCAGC 1 cut(s) 41
MaeI CTAG 2 cut(s) 140, 212
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MluCI AATT 1 cut(s) 97
MmeI TCCRAC 2 cut(s) 13, 49
MnlI CCTC 2 cut(s) 77, 116
MspR9I CCNGG 2 cut(s) 206, 263
MvaI CCWGG 2 cut(s) 206, 263
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 196
PagI TCATGA 1 cut(s) 232
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 204, 261
PspGI CCWGG 2 cut(s) 204, 261
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 2 cut(s) 106, 208
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 2 cut(s) 106, 208
ScrFI CCNGG 2 cut(s) 206, 263
SetI ASST 4 cut(s) 28, 121, 127, 145
Sse9I AATT 1 cut(s) 97
SsiI CCGC 3 cut(s) 57, 165, 280
SspMI CTAG 2 cut(s) 140, 212
StyD4I CCNGG 2 cut(s) 204, 261
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 93
TasI AATT 1 cut(s) 97
TfiI GAWTC 1 cut(s) 42
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 177
XapI RAATTY 1 cut(s) 97
XspI CTAG 2 cut(s) 140, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.