Rorug06G0370300

3-oxo-Delta(4,5)-steroid 5-beta-reductase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
51703595 .. 51705572
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0370300.1

Sequence Viewer

Length: 1206 bp
ATGGAGGTGGACTTGGATAGAATCAGCAACTTACCGAATGAGGTTATAGACAAAATATTGTCAAGTTTGCCATTGAAGGACAGAGCGAGGACGAGTATTTTGTCAAGCAAGTGGAGGTACAAATTCGCTATGCTTCCACGTCTGGTGTTTGATCATCAGTACACCTGCAAGGTTGTTGATCATGTACTCTTAAGTCACATTGGCCCGATAAGCAAGTTTCAGCTTACTCAAGGATCCAAAGACATCAAAGATATTGATCGGTGGATTCTTCACCTGTCAAGACACCCTATCAATGAGTTGATACTTAAATTTTCTGTAAGGCCGCGCTACAAGATGCCTTCATGTATGTTTTCATGTCAAGATTTGAGTCATTTGAATTTGAATAATTGTTTGCTAAAACCCCCTTCGGCATTCAAAGGCTTCAGGAGTCTGCAAAGGCTTATCATTAAGCGTGTTACGCTGGCCCAAGATGTGTTGGACAATATGATTGTTTGTTCTCCTCTGCTTGAGAGGTTGACTTTGGAGAACTGTGACGGTTTCAGACAACTCAAGATTGATGCACCCAATCTTCAATTCCTTCTCTGTATTGGTGCTTTTGATGATTTCAGTATTGTGAATACTTTGAATCTTGCTGTTGTTCGCATTCGTTTTACAAACCTACCAGTTCGTCGTAGTTCTGGCAATTTGCTCAATTTTTTTGCTAACCTGCCTCAGGTTCAGAGTCTCCATGTTAATTGGTTCTGTTTGAATTATCTGGCTGCTAGTCCTTTGCTAGAAAAGCTGCCCAAACCATGTCTACATTTGAAAGTTCTTGAAATATACATGTCCTTTGATGGGGTGGAGCATGTTTCAACTGCTCTTTGCCTTCTGAGAAGCTCCCCTGCTCTAGAAACACTAAATATCAACGCTATAAAGTGCCAAGACCAAGCTGATGTGGGAGCAGTGAACTCTTGGCTGGATAACAACTGGAGTTGTTCAGTCACCCAACTGCGACATGTGAAAATACAGCGCATATCTGGTGTTGAAGCTGAACTGGATTTTATCAGATTTCTGCTTATAAGTTCACCGGTACTTGAGACAATGACTGTTGTGCCTGATGCTGCTGATGAAAATCCACATCTAGTTGTTCTCCAAAATTCTTTGGATATAGTTAAAAAGTTGCTCCGGTTCAGGCGTGCCTCACCGAATCTAGAGATTATATATTAG

Protein Analysis

401

Amino Acids

45.79

Weight (kDa)

8.87

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 46 1.7e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 79 - 363 1.7e-17 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 85 - 301 5.6e-18 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24220 AT4G24220
fragaria_vesca FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1058
AarI CACCTGC 1 cut(s) 173
Acc36I ACCTGC 2 cut(s) 173, 714
AccI GTMKAC 1 cut(s) 796
AccII CGCG 1 cut(s) 325
AciI CCGC 1 cut(s) 323
AclWI GGATC 2 cut(s) 228, 241
AcsI RAATTY 4 cut(s) 122, 308, 376, 1135
AcuI CTGAAG 1 cut(s) 406
AfaI GTAC 4 cut(s) 119, 161, 186, 1071
AfiI CCNNNNNNNGG 2 cut(s) 712, 834
AflII CTTAAG 1 cut(s) 190
AflIII ACRYGT 2 cut(s) 822, 994
AgeI ACCGGT 1 cut(s) 1066
AjiI CACGTC 1 cut(s) 140
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 5 cut(s) 223, 781, 876, 929, 1028
AluI AGCT 5 cut(s) 223, 781, 876, 929, 1028
Alw26I GTCTC 2 cut(s) 728, 1070
AlwI GGATC 2 cut(s) 228, 241
AoxI GGCC 3 cut(s) 202, 320, 462
ApeKI GCWGC 3 cut(s) 758, 781, 1100
ApoI RAATTY 4 cut(s) 122, 308, 376, 1135
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AsiGI ACCGGT 1 cut(s) 1066
AspLEI GCGC 2 cut(s) 327, 1011
AspS9I GGNCC 2 cut(s) 203, 463
AsuHPI GGTGA 4 cut(s) 263, 973, 1056, 1173
AxyI CCTNAGG 1 cut(s) 711
BamHI GGATCC 1 cut(s) 233
BbvI GCAGC 3 cut(s) 745, 768, 1087
BccI CCATC 1 cut(s) 827
BclI TGATCA 2 cut(s) 151, 178
BcoDI GTCTC 2 cut(s) 728, 1070
BfaI CTAG 5 cut(s) 762, 773, 887, 1121, 1190
BfrI CTTAAG 1 cut(s) 190
BfuAI ACCTGC 2 cut(s) 173, 714
BisI GCNGC 4 cut(s) 323, 759, 782, 1101
BlsI GCNGC 4 cut(s) 324, 760, 783, 1102
BmgBI CACGTC 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 203, 463
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 3 cut(s) 324, 547, 1087
BpmI CTGGAG 1 cut(s) 988
BpuEI CTTGAG 4 cut(s) 213, 527, 533, 1094
BsaBI GATNNNNATC 2 cut(s) 255, 1110
BsaWI WCCGGW 2 cut(s) 1066, 1164
Bsc4I CCNNNNNNNGG 2 cut(s) 712, 834
Bse118I RCCGGY 1 cut(s) 1066
Bse1I ACTGG 3 cut(s) 662, 971, 1038
Bse21I CCTNAGG 1 cut(s) 711
Bse8I GATNNNNATC 2 cut(s) 255, 1110
BseJI GATNNNNATC 2 cut(s) 255, 1110
BseLI CCNNNNNNNGG 2 cut(s) 712, 834
BseMII CTCAG 2 cut(s) 725, 860
BseNI ACTGG 3 cut(s) 662, 971, 1038
BseRI GAGGAG 1 cut(s) 489
BseXI GCAGC 3 cut(s) 745, 768, 1087
Bsh1236I CGCG 1 cut(s) 325
BshFI GGCC 3 cut(s) 204, 322, 464
BshTI ACCGGT 1 cut(s) 1066
BsiSI CCGG 2 cut(s) 1067, 1165
BslI CCNNNNNNNGG 2 cut(s) 712, 834
BsmAI GTCTC 2 cut(s) 728, 1070
BsmI GAATGC 2 cut(s) 410, 642
BsnI GGCC 3 cut(s) 204, 322, 464
Bsp143I GATC 4 cut(s) 151, 178, 233, 256
BspACI CCGC 1 cut(s) 323
BspANI GGCC 3 cut(s) 204, 322, 464
BspCNI CTCAG 2 cut(s) 724, 861
BspFNI CGCG 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 235
BspMI ACCTGC 2 cut(s) 173, 714
BspPI GGATC 2 cut(s) 228, 241
BspTI CTTAAG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 1066
BsrI ACTGG 3 cut(s) 662, 971, 1038
BssAI RCCGGY 1 cut(s) 1066
BssMI GATC 4 cut(s) 151, 178, 233, 256
Bst4CI ACNGT 3 cut(s) 530, 536, 1087
BstAFI CTTAAG 1 cut(s) 190
BstC8I GCNNGC 2 cut(s) 462, 1176
BstDEI CTNAG 2 cut(s) 711, 869
BstENI CCTNNNNNAGG 1 cut(s) 710
BstFNI CGCG 1 cut(s) 325
BstHHI GCGC 2 cut(s) 327, 1011
BstKTI GATC 4 cut(s) 154, 181, 236, 259
BstMAI GTCTC 2 cut(s) 728, 1070
BstMBI GATC 4 cut(s) 151, 178, 233, 256
BstMWI GCNNNNNNNGC 3 cut(s) 210, 457, 778
BstNSI RCATGY 3 cut(s) 826, 848, 998
BstUI CGCG 1 cut(s) 325
BstV1I GCAGC 3 cut(s) 745, 768, 1087
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
Bsu36I CCTNAGG 1 cut(s) 711
BsuRI GGCC 3 cut(s) 204, 322, 464
BtrI CACGTC 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 948
BtsIMutI CAGTG 1 cut(s) 948
BveI ACCTGC 2 cut(s) 173, 714
Cac8I GCNNGC 2 cut(s) 462, 1176
CfoI GCGC 2 cut(s) 327, 1011
Cfr10I RCCGGY 1 cut(s) 1066
Cfr13I GGNCC 2 cut(s) 203, 463
Csp6I GTAC 4 cut(s) 118, 160, 185, 1070
CspAI ACCGGT 1 cut(s) 1066
CviAII CATG 8 cut(s) 182, 342, 354, 728, 792, 823, 845, 995
CviQI GTAC 4 cut(s) 118, 160, 185, 1070
DdeI CTNAG 2 cut(s) 711, 869
DpnI GATC 4 cut(s) 153, 180, 235, 258
DpnII GATC 4 cut(s) 151, 178, 233, 256
Eco57I CTGAAG 1 cut(s) 406
Eco81I CCTNAGG 1 cut(s) 711
EcoNI CCTNNNNNAGG 1 cut(s) 710
FaeI CATG 8 cut(s) 185, 345, 357, 731, 795, 826, 848, 998
FatI CATG 8 cut(s) 181, 341, 353, 727, 791, 822, 844, 994
FbaI TGATCA 2 cut(s) 151, 178
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 4 cut(s) 323, 759, 782, 1101
Fsp4HI GCNGC 4 cut(s) 323, 759, 782, 1101
FspBI CTAG 5 cut(s) 762, 773, 887, 1121, 1190
GlaI GCGC 2 cut(s) 326, 1010
GluI GCNGC 4 cut(s) 323, 759, 782, 1101
GsuI CTGGAG 1 cut(s) 988
HaeIII GGCC 3 cut(s) 204, 322, 464
HapII CCGG 2 cut(s) 1067, 1165
HhaI GCGC 2 cut(s) 327, 1011
Hin1II CATG 8 cut(s) 185, 345, 357, 731, 795, 826, 848, 998
Hin6I GCGC 2 cut(s) 325, 1009
HinP1I GCGC 2 cut(s) 325, 1009
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 7 cut(s) 21, 265, 367, 427, 625, 721, 1186
HpaII CCGG 2 cut(s) 1067, 1165
HphI GGTGA 4 cut(s) 263, 973, 1056, 1173
Hpy166II GTNNAC 6 cut(s) 10, 162, 516, 797, 946, 1064
Hpy188I TCNGA 4 cut(s) 542, 720, 870, 1046
Hpy188III TCNNGA 7 cut(s) 279, 359, 424, 550, 812, 887, 1190
Hpy8I GTNNAC 6 cut(s) 10, 162, 516, 797, 946, 1064
Hpy99I CGWCG 1 cut(s) 672
HpyAV CCTTC 5 cut(s) 70, 348, 414, 587, 875
HpyCH4III ACNGT 3 cut(s) 530, 536, 1087
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 3 cut(s) 168, 433, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 210, 457, 778
HpyF3I CTNAG 2 cut(s) 711, 869
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 8 cut(s) 185, 345, 357, 731, 795, 826, 848, 998
HspAI GCGC 2 cut(s) 325, 1009
Ksp22I TGATCA 2 cut(s) 151, 178
Kzo9I GATC 4 cut(s) 151, 178, 233, 256
LmnI GCTCC 4 cut(s) 841, 881, 938, 1167
Lsp1109I GCAGC 3 cut(s) 745, 768, 1087
LweI GCATC 3 cut(s) 324, 547, 1087
MaeI CTAG 5 cut(s) 762, 773, 887, 1121, 1190
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 4 cut(s) 194, 454, 530, 979
MalI GATC 4 cut(s) 153, 180, 235, 258
MboI GATC 4 cut(s) 151, 178, 233, 256
MboII GAAGA 2 cut(s) 260, 560
MflI RGATCY 1 cut(s) 233
MlyI GAGTC 3 cut(s) 376, 436, 730
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 7 cut(s) 34, 81, 108, 504, 510, 720, 1189
MseI TTAA 5 cut(s) 191, 306, 447, 732, 1152
MspCI CTTAAG 1 cut(s) 190
MspI CCGG 2 cut(s) 1067, 1165
Mva1269I GAATGC 2 cut(s) 410, 642
MvnI CGCG 1 cut(s) 325
MwoI GCNNNNNNNGC 3 cut(s) 210, 457, 778
NdeII GATC 4 cut(s) 151, 178, 233, 256
NlaIII CATG 8 cut(s) 185, 345, 357, 731, 795, 826, 848, 998
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 3 cut(s) 194, 530, 979
NspI RCATGY 3 cut(s) 826, 848, 998
PaqCI CACCTGC 1 cut(s) 173
PciI ACATGT 2 cut(s) 822, 994
PctI GAATGC 2 cut(s) 410, 642
PfeI GAWTC 4 cut(s) 21, 265, 625, 1186
PinAI ACCGGT 1 cut(s) 1066
PkrI GCNGC 4 cut(s) 324, 760, 783, 1102
PleI GAGTC 3 cut(s) 375, 435, 729
PpsI GAGTC 3 cut(s) 375, 435, 729
PscI ACATGT 2 cut(s) 822, 994
PsiI TTATAA 1 cut(s) 1058
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 203, 463
PsuI RGATCY 1 cut(s) 233
RsaI GTAC 4 cut(s) 119, 161, 186, 1071
RsaNI GTAC 4 cut(s) 118, 160, 185, 1070
SaqAI TTAA 5 cut(s) 191, 306, 447, 732, 1152
SatI GCNGC 4 cut(s) 323, 759, 782, 1101
Sau3AI GATC 4 cut(s) 151, 178, 233, 256
Sau96I GGNCC 2 cut(s) 203, 463
SchI GAGTC 3 cut(s) 376, 436, 730
SfaNI GCATC 3 cut(s) 324, 547, 1087
SmlI CTYRAG 5 cut(s) 190, 228, 506, 548, 1073
SmoI CTYRAG 5 cut(s) 190, 228, 506, 548, 1073
SsiI CCGC 1 cut(s) 323
SspI AATATT 1 cut(s) 57
SspMI CTAG 5 cut(s) 762, 773, 887, 1121, 1190
TaaI ACNGT 3 cut(s) 530, 536, 1087
TaiI ACGT 1 cut(s) 142
TatI WGTACW 2 cut(s) 159, 184
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 4 cut(s) 21, 265, 625, 1186
Tru1I TTAA 5 cut(s) 191, 306, 447, 732, 1152
Tru9I TTAA 5 cut(s) 191, 306, 447, 732, 1152
TscAI CASTG 1 cut(s) 948
TseFI GTSAC 3 cut(s) 194, 530, 979
TseI GCWGC 3 cut(s) 758, 781, 1100
Tsp45I GTSAC 3 cut(s) 194, 530, 979
TspDTI ATGAA 3 cut(s) 330, 342, 1122
TspRI CASTG 1 cut(s) 948
Vha464I CTTAAG 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 710
XapI RAATTY 4 cut(s) 122, 308, 376, 1135
XbaI TCTAGA 2 cut(s) 886, 1189
XceI RCATGY 3 cut(s) 826, 848, 998
XmiI GTMKAC 1 cut(s) 796
XspI CTAG 5 cut(s) 762, 773, 887, 1121, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.