Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Forward (+)

66310305 .. 66310691

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG483200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATCGATGTAACGGGAATAGTAGGCAACAGCCTAATTGAGATTCTTCCACTCGCAGATACTCCCGGCGGTCCATGGAAGGTCTATGGTGTTGCATGCCGTCCGCGCCCAAATTGGAACACTGACCATCCTGTTGACTACATCCACTGCAATATCTCAGACCCAGAAGACACCAAATTCGAACTCTCCCCGTTAACCGATGTCACGCACATCTTTTACGTGACATGGACCAATAAAGCCACTGAAATTGAGAATTGTGAGGCCAACGGTGCTATGTTCCGGAATGTGCTACAGGTCATTATCCCAGTGGCTCCGAATCTCCGTCACATCTGCCTCCAAACTGGGAGCAAACACTATGTTGGGCCGTTCGAGTCTCTTATAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

128

Amino Acids

14.24

Weight (kDa)

5.16

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	106
AccIII	TCCGGA	1 cut(s)	279
AciI	CCGC	2 cut(s)	69, 104
AcsI	RAATTY	1 cut(s)	176
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	378
Aor13HI	TCCGGA	1 cut(s)	279
AoxI	GGCC	2 cut(s)	261, 362
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	71, 228, 362
AsuC2I	CCSGG	1 cut(s)	66
AsuII	TTCGAA	1 cut(s)	180
AvaII	GGWCC	2 cut(s)	71, 228
BbsI	GAAGAC	1 cut(s)	174
BccI	CCATC	1 cut(s)	135
BceAI	ACGGC	2 cut(s)	84, 349
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	2 cut(s)	71, 228
BmgT120I	GGNCC	3 cut(s)	71, 228, 362
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	66
BmrI	ACTGGG	2 cut(s)	299, 351
BmuI	ACTGGG	2 cut(s)	299, 351
BpiI	GAAGAC	1 cut(s)	174
Bpu14I	TTCGAA	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	305, 346
BseAI	TCCGGA	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	2 cut(s)	127, 141
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	2 cut(s)	305, 346
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	2 cut(s)	263, 364
BshVI	ATCGAT	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	66, 280
BsmAI	GTCTC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	263, 364
Bsp119I	TTCGAA	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	2 cut(s)	69, 104
BspANI	GGCC	2 cut(s)	263, 364
BspCNI	CTCAG	1 cut(s)	170
BspDI	ATCGAT	1 cut(s)	6
BspEI	TCCGGA	1 cut(s)	279
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	312
BspT104I	TTCGAA	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	305, 346
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	157
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	127, 141
BstFNI	CGCG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 269
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	290
BstUI	CGCG	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	263, 364
BsuTUI	ATCGAT	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	127, 141
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	4 cut(s)	120, 145, 240, 312
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	3 cut(s)	71, 228, 362
ClaI	ATCGAT	1 cut(s)	6
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviAII	CATG	3 cut(s)	75, 96, 225
CviJI	RGCY	6 cut(s)	33, 239, 263, 311, 364, 383
CviKI_1	RGCY	6 cut(s)	33, 239, 263, 311, 364, 383
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	2 cut(s)	71, 228
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	3 cut(s)	78, 99, 228
FaiI	YATR	7 cut(s)	76, 87, 97, 226, 275, 357, 380
FatI	CATG	3 cut(s)	74, 95, 224
FokI	GGATG	2 cut(s)	114, 128
GlaI	GCGC	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	263, 364
HapII	CCGG	2 cut(s)	66, 280
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	78, 99, 228
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	2 cut(s)	136, 195
HindII	GTYRAC	2 cut(s)	136, 195
HinfI	GANTC	3 cut(s)	43, 316, 371
HpaI	GTTAAC	1 cut(s)	195
HpaII	CCGG	2 cut(s)	66, 280
Hpy166II	GTNNAC	2 cut(s)	136, 195
Hpy188I	TCNGA	2 cut(s)	160, 315
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	2 cut(s)	136, 195
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	2 cut(s)	95, 150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 269
HpyF3I	CTNAG	1 cut(s)	157
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	78, 99, 228
HspAI	GCGC	1 cut(s)	106
Kpn2I	TCCGGA	1 cut(s)	279
KspAI	GTTAAC	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	316, 345
LpnPI	CCDG	7 cut(s)	79, 144, 177, 278, 293, 318, 327
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	4 cut(s)	10, 202, 220, 323
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	38, 179
MluCI	AATT	5 cut(s)	36, 112, 176, 246, 253
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	2 cut(s)	253, 344
MroI	TCCGGA	1 cut(s)	279
MseI	TTAA	1 cut(s)	194
MspI	CCGG	2 cut(s)	66, 280
MspR9I	CCNGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	2 cut(s)	105, 269
NciI	CCSGG	1 cut(s)	66
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	3 cut(s)	78, 99, 228
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	3 cut(s)	202, 220, 323
NspI	RCATGY	1 cut(s)	99
NspV	TTCGAA	1 cut(s)	180
PaeI	GCATGC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	43, 316
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Ppu21I	YACGTR	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	3 cut(s)	71, 228, 362
SaqAI	TTAA	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	3 cut(s)	71, 228, 362
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	4 cut(s)	84, 222, 297, 385
SfcI	CTRYAG	1 cut(s)	290
SfuI	TTCGAA	1 cut(s)	180
SinI	GGWCC	2 cut(s)	71, 228
SphI	GCATGC	1 cut(s)	99
Sse9I	AATT	5 cut(s)	36, 112, 176, 246, 253
SsiI	CCGC	2 cut(s)	69, 104
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	3 cut(s)	6, 180, 369
TasI	AATT	5 cut(s)	36, 112, 176, 246, 253
TfiI	GAWTC	2 cut(s)	43, 316
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	4 cut(s)	127, 152, 247, 312
TseFI	GTSAC	3 cut(s)	202, 220, 323
Tsp45I	GTSAC	3 cut(s)	202, 220, 323
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	4 cut(s)	127, 152, 247, 312
VpaK11BI	GGWCC	2 cut(s)	71, 228
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.