Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Reverse (-)

66243802 .. 66244485

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG497400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCACGACGCGCCGTCGACGGAAGATCTGCCAAGGTTGAATGTCCCTCTCTTCTATTACACTCTGGAGGACGTGTTGTATGAAGAGGCGGGGAAGAATGAAAACGTGACCTGGTCCGTTCACCGACCGGGACTCATATTCGGGTTGTCGCCTTATAGCATGAGCAGTATAGTGAGCATGATGTGCTCGTACGCCGCCATATGCAAGCACGAGGGGTTGCCGTTGAGGTTTCCGGGGAGGAGAGAGGGTTGGGAATCGTATTCGGAGGCTTCGGATGCGGATCTGATAGCGGAGCAGCAAATCTGGGCGGCGGTTGATCCGTACGCGCGGAACGAAGCGTTTAACATCAACAACGGGGACGTGTTCAAGTGGAAGCGTATGTGGAAGGTGTTGGCGGAGCAGTATGAGATTGAGGAGTATGGCTTTGATGAGGGTTTCAGCTTGGTGGAGATGATGAAGGATAAGGGTGGCGTGTGGGATGAGATAGTGAGGGAGAATCAGCTGCGGCCGACGAAGTTGGAGGAGGTGGGGATGTGGGAGCTTGTGGAGATTGTGTTGGGTGGAGGAGCCGAGTTGTCTAGCATGAACAAGAGTAAGGAGCATGGGTTTGTGGGATTCAGAAACTCTAGGAATTCCTTCGTTGCTTGGATTGATAAAGCAAAGGCTTATAAGATTGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

227

Amino Acids

26.01

Weight (kDa)

4.88

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRISE	PF22917	3 - 139	9.4e-12	PRISE-like Rossmann-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AccI	GTMKAC	1 cut(s)	17
AccII	CGCG	3 cut(s)	11, 326, 328
AciI	CCGC	9 cut(s)	89, 195, 278, 290, 308, 311, 328, 395, 505
AclWI	GGATC	2 cut(s)	288, 311
AcoI	YGGCCR	1 cut(s)	506
AcsI	RAATTY	1 cut(s)	631
AfaI	GTAC	2 cut(s)	191, 323
AflIII	ACRYGT	2 cut(s)	72, 360
AgsI	TTSAA	2 cut(s)	40, 367
AhdI	GACNNNNNGTC	1 cut(s)	13
AjiI	CACGTC	2 cut(s)	73, 361
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	3 cut(s)	441, 502, 541
AluI	AGCT	3 cut(s)	441, 502, 541
Alw21I	GWGCWC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	288, 311
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	2 cut(s)	295, 502
ApoI	RAATTY	1 cut(s)	631
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	2 cut(s)	13, 328
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	2 cut(s)	129, 234
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	114
BauI	CACGAG	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	307, 489
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	129, 234
BfaI	CTAG	2 cut(s)	579, 627
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	5 cut(s)	195, 296, 309, 503, 506
BlsI	GCNGC	5 cut(s)	196, 297, 310, 504, 507
Bme1390I	CCNGG	3 cut(s)	112, 129, 234
Bme18I	GGWCC	1 cut(s)	114
BmeRI	GACNNNNNGTC	1 cut(s)	13
BmgBI	CACGTC	2 cut(s)	73, 361
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	3 cut(s)	112, 129, 234
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	129, 234
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	32, 233
BsaXI	ACNNNNNCTCC	8 cut(s)	59, 89, 232, 262, 539, 569, 590, 620
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	32, 233
BseGI	GGATG	3 cut(s)	280, 484, 537
BseJI	GATNNNNATC	1 cut(s)	279
BseRI	GAGGAG	4 cut(s)	253, 428, 536, 579
BseX3I	CGGCCG	1 cut(s)	506
BseXI	GCAGC	2 cut(s)	307, 489
Bsh1236I	CGCG	3 cut(s)	11, 326, 328
Bsh1285I	CGRYCG	2 cut(s)	128, 509
BshFI	GGCC	1 cut(s)	508
BsiEI	CGRYCG	2 cut(s)	128, 509
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	128, 233
BsiWI	CGTACG	2 cut(s)	189, 321
BslFI	GGGAC	3 cut(s)	29, 144, 371
BsmFI	GGGAC	3 cut(s)	29, 144, 371
BsnI	GGCC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	25, 280, 316
BspACI	CCGC	9 cut(s)	89, 195, 278, 290, 308, 311, 328, 395, 505
BspANI	GGCC	1 cut(s)	508
BspFNI	CGCG	3 cut(s)	11, 326, 328
BspLI	GGNNCC	1 cut(s)	568
BspPI	GGATC	2 cut(s)	288, 311
BssECI	CCNNGG	2 cut(s)	32, 233
BssMI	GATC	3 cut(s)	25, 280, 316
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	56, 78
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	206
BstF5I	GGATG	3 cut(s)	280, 484, 537
BstFNI	CGCG	3 cut(s)	11, 326, 328
BstHHI	GCGC	2 cut(s)	13, 328
BstKTI	GATC	3 cut(s)	28, 283, 319
BstMBI	GATC	3 cut(s)	25, 280, 316
BstMCI	CGRYCG	2 cut(s)	128, 509
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 183, 275
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	3 cut(s)	110, 127, 232
BstUI	CGCG	3 cut(s)	11, 326, 328
BstV1I	GCAGC	2 cut(s)	307, 489
BstX2I	RGATCY	2 cut(s)	25, 280
BstYI	RGATCY	2 cut(s)	25, 280
BstZI	CGGCCG	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	508
BtrI	CACGTC	2 cut(s)	73, 361
BtsCI	GGATG	3 cut(s)	280, 484, 537
Cac8I	GCNNGC	1 cut(s)	206
CfoI	GCGC	2 cut(s)	13, 328
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	17
CsiI	ACCWGGT	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	190, 322
CviAII	CATG	4 cut(s)	160, 178, 583, 602
CviJI	RGCY	8 cut(s)	269, 423, 441, 502, 508, 541, 569, 665
CviKI_1	RGCY	8 cut(s)	269, 423, 441, 502, 508, 541, 569, 665
CviQI	GTAC	2 cut(s)	190, 322
DpnI	GATC	3 cut(s)	27, 282, 318
DpnII	GATC	3 cut(s)	25, 280, 316
DriI	GACNNNNNGTC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	506
EagI	CGGCCG	1 cut(s)	506
Eam1104I	CTCTTC	2 cut(s)	56, 78
Eam1105I	GACNNNNNGTC	1 cut(s)	13
EarI	CTCTTC	2 cut(s)	56, 78
EciI	GGCGGA	1 cut(s)	410
EclXI	CGGCCG	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	114
Eco52I	CGGCCG	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	4 cut(s)	163, 181, 586, 605
FaqI	GGGAC	3 cut(s)	29, 144, 371
FatI	CATG	4 cut(s)	159, 177, 582, 601
FauI	CCCGC	1 cut(s)	82
FauNDI	CATATG	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	5 cut(s)	195, 296, 309, 503, 506
FokI	GGATG	3 cut(s)	287, 491, 544
Fsp4HI	GCNGC	5 cut(s)	195, 296, 309, 503, 506
FspBI	CTAG	2 cut(s)	579, 627
GlaI	GCGC	2 cut(s)	12, 327
GluI	GCNGC	5 cut(s)	195, 296, 309, 503, 506
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	2 cut(s)	128, 233
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	2 cut(s)	13, 328
Hin1II	CATG	4 cut(s)	163, 181, 586, 605
Hin6I	GCGC	2 cut(s)	11, 326
HinP1I	GCGC	2 cut(s)	11, 326
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	4 cut(s)	132, 254, 496, 615
HpaII	CCGG	2 cut(s)	128, 233
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	18, 121
Hpy188I	TCNGA	4 cut(s)	265, 274, 285, 620
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	2 cut(s)	18, 121
Hpy99I	CGWCG	4 cut(s)	11, 19, 22, 514
HpyAV	CCTTC	3 cut(s)	379, 451, 646
HpyCH4IV	ACGT	3 cut(s)	72, 105, 360
HpyCH4V	TGCA	2 cut(s)	4, 204
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 183, 275
HpySE526I	ACGT	3 cut(s)	72, 105, 360
Hsp92II	CATG	4 cut(s)	163, 181, 586, 605
HspAI	GCGC	2 cut(s)	11, 326
Kzo9I	GATC	3 cut(s)	25, 280, 316
LmnI	GCTCC	5 cut(s)	292, 397, 538, 566, 598
LpnPI	CCDG	6 cut(s)	50, 97, 124, 141, 246, 289
Lsp1109I	GCAGC	2 cut(s)	307, 489
LweI	GCATC	1 cut(s)	265
MabI	ACCWGGT	1 cut(s)	110
MaeI	CTAG	2 cut(s)	579, 627
MaeII	ACGT	3 cut(s)	72, 105, 360
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	3 cut(s)	27, 282, 318
MboI	GATC	3 cut(s)	25, 280, 316
MboII	GAAGA	4 cut(s)	35, 43, 95, 106
MflI	RGATCY	2 cut(s)	25, 280
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	1 cut(s)	631
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	2 cut(s)	128, 233
MspR9I	CCNGG	3 cut(s)	112, 129, 234
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	3 cut(s)	11, 326, 328
MwoI	GCNNNNNNNGC	3 cut(s)	10, 183, 275
NciI	CCSGG	2 cut(s)	129, 234
NdeI	CATATG	1 cut(s)	200
NdeII	GATC	3 cut(s)	25, 280, 316
NlaIII	CATG	4 cut(s)	163, 181, 586, 605
NlaIV	GGNNCC	1 cut(s)	568
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	3 cut(s)	254, 496, 615
Pfl23II	CGTACG	2 cut(s)	189, 321
PflFI	GACNNNGTC	1 cut(s)	112
PkrI	GCNGC	5 cut(s)	196, 297, 310, 504, 507
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PsiI	TTATAA	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspLI	CGTACG	2 cut(s)	189, 321
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	1 cut(s)	114
PsuI	RGATCY	2 cut(s)	25, 280
PsyI	GACNNNGTC	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	502
RsaI	GTAC	2 cut(s)	191, 323
RsaNI	GTAC	2 cut(s)	190, 322
SalI	GTCGAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	5 cut(s)	195, 296, 309, 503, 506
Sau3AI	GATC	3 cut(s)	25, 280, 316
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	3 cut(s)	112, 129, 234
SduI	GDGCHC	1 cut(s)	188
SexAI	ACCWGGT	1 cut(s)	110
SfaNI	GCATC	1 cut(s)	265
SgrDI	CGTCGACG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	114
Sse9I	AATT	1 cut(s)	631
SsiI	CCGC	9 cut(s)	89, 195, 278, 290, 308, 311, 328, 395, 505
SspMI	CTAG	2 cut(s)	579, 627
StyD4I	CCNGG	3 cut(s)	110, 127, 232
StyI	CCWWGG	1 cut(s)	32
TaiI	ACGT	3 cut(s)	75, 108, 363
TaqI	TCGA	1 cut(s)	17
TasI	AATT	1 cut(s)	631
TauI	GCSGC	3 cut(s)	197, 311, 508
TfiI	GAWTC	3 cut(s)	254, 496, 615
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	2 cut(s)	295, 502
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	4 cut(s)	96, 114, 470, 599
TspGWI	ACGGA	3 cut(s)	35, 106, 309
Tth111I	GACNNNGTC	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	2 cut(s)	579, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.