Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Reverse (-)

69520912 .. 69522206

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG492500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCTGCGCAACGTTTTGAGCTCCGTCATCCCGAACGCGCCGAATCTCCGCCACGTGTGCCTCCTCACCGGGACCAAGCACTATGACGGGCCGTTCGACGCGTACGGAAAGGTCCAGATGCATGACGCGCCGTCGACGGAAGATCTGCCAAGGTTGAATGTCCCTCTCTTCTATTACACTCTGGAGGACGTGTTGTATGAAGAGGCGGGGAAGAATGAAAACGTGACCTGGTCCGTTCACCGACCGGGACTCATATTCGGGTTGTCGCCTTATAGCATGAGCAGTATAGTGAGCATGATGTGCTCGTACGCCGCCATATGCAAGCACGAGGGGTTGCCGTTGAGGTTTCCGGGGAGGAGAGAGGGTTGGGAATCGTATTCGGAGGCTTCGGATGCGGATCTGATAGCGGAGCAGCAAATCTGGGCGGCGGTTGATCCGTACGCGCGGAACGAAGCGTTTAACATCAACAACGGGGACGTGTTCATGAAGTGGAAGCGTATGTGGAAGGTGTTGGCGGAGCAGTATGAGATTGAGGAGTATGGCTTTGATGAGGGTTTCAGCTTGGTGGAGATGATGAAGGATAAGGGTGGCGTGTGGGATGAGATAGTGAGGGAGAATCAGCTGCGGCCGACGAAGTTGGAGGAGGTGGGGATGTGGGAGCTTGTGGAGATTGTGTTGGGTGGAGGAGCCGAGTTGTCTAGCATGAACAAGAGTAAGGAGCATGGGTTTGTGGGATTCAGAAACTCTAGGAATTCCTTCGTTGCTTGGATTGATAAAGCAAAGGCTTATAAGATTGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

267

Amino Acids

30.45

Weight (kDa)

5.18

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRISE	PF22917	12 - 178	7.9e-18	PRISE-like Rossmann-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	789
Acc16I	TGCGCA	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	5 cut(s)	38, 101, 128, 443, 445
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	2 cut(s)	405, 428
AcoI	YGGCCR	1 cut(s)	626
AcsI	RAATTY	1 cut(s)	751
AcvI	CACGTG	1 cut(s)	55
AfaI	GTAC	3 cut(s)	104, 308, 440
AflIII	ACRYGT	4 cut(s)	54, 99, 189, 477
AgsI	TTSAA	1 cut(s)	157
AhdI	GACNNNNNGTC	1 cut(s)	130
AjiI	CACGTC	2 cut(s)	190, 478
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	4 cut(s)	21, 561, 622, 661
AluI	AGCT	4 cut(s)	21, 561, 622, 661
Alw21I	GWGCWC	2 cut(s)	23, 305
AlwI	GGATC	2 cut(s)	405, 428
AoxI	GGCC	2 cut(s)	89, 626
ApeKI	GCWGC	3 cut(s)	4, 412, 622
ApoI	RAATTY	1 cut(s)	751
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
Asp700I	GAANNNNTTC	1 cut(s)	755
AspLEI	GCGC	4 cut(s)	9, 40, 130, 445
AspS9I	GGNCC	4 cut(s)	72, 89, 112, 231
AsuC2I	CCSGG	3 cut(s)	70, 246, 351
AsuHPI	GGTGA	2 cut(s)	58, 230
AvaII	GGWCC	3 cut(s)	72, 112, 231
BanII	GRGCYC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	326
BbrPI	CACGTG	1 cut(s)	55
Bbv12I	GWGCWC	2 cut(s)	23, 305
BbvI	GCAGC	2 cut(s)	424, 609
BceAI	ACGGC	3 cut(s)	76, 115, 322
BciT130I	CCWGG	1 cut(s)	229
BcnI	CCSGG	3 cut(s)	70, 246, 351
BfaI	CTAG	2 cut(s)	699, 747
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	6 cut(s)	5, 312, 413, 426, 623, 626
BlsI	GCNGC	6 cut(s)	6, 313, 414, 427, 624, 627
Bme1390I	CCNGG	4 cut(s)	70, 229, 246, 351
Bme18I	GGWCC	3 cut(s)	72, 112, 231
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmgBI	CACGTC	2 cut(s)	190, 478
BmgT120I	GGNCC	4 cut(s)	72, 89, 112, 231
BmiI	GGNNCC	2 cut(s)	73, 688
BmrFI	CCNGG	4 cut(s)	70, 229, 246, 351
BmsI	GCATC	2 cut(s)	108, 382
BpmI	CTGGAG	1 cut(s)	203
BpuMI	CCSGG	3 cut(s)	70, 246, 351
BsaAI	YACGTR	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	149, 350
BsaXI	ACNNNNNCTCC	8 cut(s)	176, 206, 349, 379, 659, 689, 710, 740
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	149, 350
BseGI	GGATG	4 cut(s)	27, 397, 604, 657
BseJI	GATNNNNATC	1 cut(s)	396
BseRI	GAGGAG	5 cut(s)	53, 370, 548, 656, 699
BseX3I	CGGCCG	1 cut(s)	626
BseXI	GCAGC	2 cut(s)	424, 609
Bsh1236I	CGCG	5 cut(s)	38, 101, 128, 443, 445
Bsh1285I	CGRYCG	2 cut(s)	245, 629
BshFI	GGCC	2 cut(s)	91, 628
BsiEI	CGRYCG	2 cut(s)	245, 629
BsiHKAI	GWGCWC	2 cut(s)	23, 305
BsiSI	CCGG	3 cut(s)	69, 245, 350
BsiWI	CGTACG	3 cut(s)	102, 306, 438
BslFI	GGGAC	4 cut(s)	85, 146, 261, 488
BsmFI	GGGAC	4 cut(s)	85, 146, 261, 488
BsnI	GGCC	2 cut(s)	91, 628
Bsp1286I	GDGCHC	2 cut(s)	23, 305
Bsp143I	GATC	3 cut(s)	142, 397, 433
BspANI	GGCC	2 cut(s)	91, 628
BspFNI	CGCG	5 cut(s)	38, 101, 128, 443, 445
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	73, 688
BspPI	GGATC	2 cut(s)	405, 428
BssECI	CCNNGG	2 cut(s)	149, 350
BssMI	GATC	3 cut(s)	142, 397, 433
BssSI	CACGAG	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	173, 195
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	323
BstF5I	GGATG	4 cut(s)	27, 397, 604, 657
BstFNI	CGCG	5 cut(s)	38, 101, 128, 443, 445
BstHHI	GCGC	4 cut(s)	9, 40, 130, 445
BstKTI	GATC	3 cut(s)	145, 400, 436
BstMBI	GATC	3 cut(s)	142, 397, 433
BstMCI	CGRYCG	2 cut(s)	245, 629
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 127, 300, 392
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	4 cut(s)	68, 227, 244, 349
BstUI	CGCG	5 cut(s)	38, 101, 128, 443, 445
BstV1I	GCAGC	2 cut(s)	424, 609
BstX2I	RGATCY	2 cut(s)	142, 397
BstYI	RGATCY	2 cut(s)	142, 397
BstZI	CGGCCG	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	91, 628
BtrI	CACGTC	2 cut(s)	190, 478
BtsCI	GGATG	4 cut(s)	27, 397, 604, 657
Cac8I	GCNNGC	1 cut(s)	323
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	4 cut(s)	9, 40, 130, 445
Cfr13I	GGNCC	4 cut(s)	72, 89, 112, 231
CseI	GACGC	2 cut(s)	107, 134
CsiI	ACCWGGT	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	103, 307, 439
CviAII	CATG	6 cut(s)	122, 277, 295, 484, 703, 722
CviQI	GTAC	3 cut(s)	103, 307, 439
DpnI	GATC	3 cut(s)	144, 399, 435
DpnII	GATC	3 cut(s)	142, 397, 433
DriI	GACNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	626
EagI	CGGCCG	1 cut(s)	626
Eam1104I	CTCTTC	2 cut(s)	173, 195
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EarI	CTCTTC	2 cut(s)	173, 195
EciI	GGCGGA	2 cut(s)	38, 530
Ecl136II	GAGCTC	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	3 cut(s)	72, 112, 231
Eco52I	CGGCCG	1 cut(s)	626
Eco53kI	GAGCTC	1 cut(s)	21
Eco72I	CACGTG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	751
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	6 cut(s)	125, 280, 298, 487, 706, 725
FaqI	GGGAC	4 cut(s)	85, 146, 261, 488
FatI	CATG	6 cut(s)	121, 276, 294, 483, 702, 721
FauI	CCCGC	1 cut(s)	199
FauNDI	CATATG	1 cut(s)	317
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	6 cut(s)	5, 312, 413, 426, 623, 626
FokI	GGATG	4 cut(s)	14, 404, 611, 664
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	6 cut(s)	5, 312, 413, 426, 623, 626
FspBI	CTAG	2 cut(s)	699, 747
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	4 cut(s)	8, 39, 129, 444
GluI	GCNGC	6 cut(s)	5, 312, 413, 426, 623, 626
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	91, 628
HapII	CCGG	3 cut(s)	69, 245, 350
HgaI	GACGC	2 cut(s)	107, 134
HhaI	GCGC	4 cut(s)	9, 40, 130, 445
Hin1II	CATG	6 cut(s)	125, 280, 298, 487, 706, 725
Hin6I	GCGC	4 cut(s)	7, 38, 128, 443
HinP1I	GCGC	4 cut(s)	7, 38, 128, 443
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	5 cut(s)	43, 249, 371, 616, 735
HpaII	CCGG	3 cut(s)	69, 245, 350
HphI	GGTGA	2 cut(s)	58, 230
Hpy166II	GTNNAC	2 cut(s)	135, 238
Hpy188I	TCNGA	4 cut(s)	382, 391, 402, 740
Hpy188III	TCNNGA	4 cut(s)	31, 115, 182, 484
Hpy8I	GTNNAC	2 cut(s)	135, 238
Hpy99I	CGWCG	4 cut(s)	101, 136, 139, 634
HpyAV	CCTTC	3 cut(s)	499, 571, 766
HpyCH4IV	ACGT	5 cut(s)	12, 54, 189, 222, 477
HpyCH4V	TGCA	2 cut(s)	121, 321
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 127, 300, 392
HpySE526I	ACGT	5 cut(s)	12, 54, 189, 222, 477
Hsp92II	CATG	6 cut(s)	125, 280, 298, 487, 706, 725
HspAI	GCGC	4 cut(s)	7, 38, 128, 443
Kzo9I	GATC	3 cut(s)	142, 397, 433
LmnI	GCTCC	6 cut(s)	26, 409, 517, 658, 686, 718
LpnPI	CCDG	8 cut(s)	82, 128, 167, 214, 241, 258, 363, 406
Lsp1109I	GCAGC	2 cut(s)	424, 609
LweI	GCATC	2 cut(s)	108, 382
MabI	ACCWGGT	1 cut(s)	227
MaeI	CTAG	2 cut(s)	699, 747
MaeII	ACGT	5 cut(s)	12, 54, 189, 222, 477
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	144, 399, 435
MboI	GATC	3 cut(s)	142, 397, 433
MboII	GAAGA	4 cut(s)	152, 160, 212, 223
MflI	RGATCY	2 cut(s)	142, 397
MhlI	GDGCHC	2 cut(s)	23, 305
MluCI	AATT	1 cut(s)	751
MluI	ACGCGT	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	618
Mph1103I	ATGCAT	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	755
MseI	TTAA	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	3 cut(s)	69, 245, 350
MspR9I	CCNGG	4 cut(s)	70, 229, 246, 351
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	5 cut(s)	38, 101, 128, 443, 445
MwoI	GCNNNNNNNGC	4 cut(s)	57, 127, 300, 392
NciI	CCSGG	3 cut(s)	70, 246, 351
NdeI	CATATG	1 cut(s)	317
NdeII	GATC	3 cut(s)	142, 397, 433
NlaIII	CATG	6 cut(s)	125, 280, 298, 487, 706, 725
NlaIV	GGNNCC	2 cut(s)	73, 688
NmeAIII	GCCGAG	1 cut(s)	715
NmuCI	GTSAC	1 cut(s)	223
NsbI	TGCGCA	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	123
PagI	TCATGA	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 447
PdmI	GAANNNNTTC	1 cut(s)	755
PfeI	GAWTC	4 cut(s)	43, 371, 616, 735
Pfl23II	CGTACG	3 cut(s)	102, 306, 438
PflFI	GACNNNGTC	1 cut(s)	229
PkrI	GCNGC	6 cut(s)	6, 313, 414, 427, 624, 627
PleI	GAGTC	1 cut(s)	243
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	243
Ppu21I	YACGTR	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	789
Psp124BI	GAGCTC	1 cut(s)	23
Psp1406I	AACGTT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	227
PspLI	CGTACG	3 cut(s)	102, 306, 438
PspN4I	GGNNCC	2 cut(s)	73, 688
PspPI	GGNCC	4 cut(s)	72, 89, 112, 231
PsuI	RGATCY	2 cut(s)	142, 397
PsyI	GACNNNGTC	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	3 cut(s)	104, 308, 440
RsaNI	GTAC	3 cut(s)	103, 307, 439
SacI	GAGCTC	1 cut(s)	23
SalI	GTCGAC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	6 cut(s)	5, 312, 413, 426, 623, 626
Sau3AI	GATC	3 cut(s)	142, 397, 433
Sau96I	GGNCC	4 cut(s)	72, 89, 112, 231
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	4 cut(s)	70, 229, 246, 351
SduI	GDGCHC	2 cut(s)	23, 305
SexAI	ACCWGGT	1 cut(s)	227
SfaNI	GCATC	2 cut(s)	108, 382
SgrDI	CGTCGACG	1 cut(s)	133
SinI	GGWCC	3 cut(s)	72, 112, 231
Sse9I	AATT	1 cut(s)	751
SspMI	CTAG	2 cut(s)	699, 747
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	4 cut(s)	68, 227, 244, 349
StyI	CCWWGG	1 cut(s)	149
TaiI	ACGT	5 cut(s)	15, 57, 192, 225, 480
TaqI	TCGA	2 cut(s)	96, 134
TasI	AATT	1 cut(s)	751
TauI	GCSGC	3 cut(s)	314, 428, 628
TfiI	GAWTC	4 cut(s)	43, 371, 616, 735
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	3 cut(s)	4, 412, 622
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	6 cut(s)	213, 231, 472, 500, 590, 719
TspGWI	ACGGA	5 cut(s)	13, 120, 152, 223, 426
Tth111I	GACNNNGTC	1 cut(s)	229
VpaK11BI	GGWCC	3 cut(s)	72, 112, 231
XapI	RAATTY	1 cut(s)	751
XmiI	GTMKAC	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	755
XspI	CTAG	2 cut(s)	699, 747
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.