pycom13g22780

3-oxo-Delta(4,5)-steroid 5-beta-reductase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
20581663 .. 20582196
534 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g22780.2

Sequence Viewer

Length: 483 bp
ATGAACATAATCGTTGCGCTTTGTGTTTATGCTGCTATATGTAAGAAGGAAGGAAGACCATTGAAGTTTCCCGGTAGCAAAGCGGCTTGGGAGTGTTATGCGGTGGCTTCGGATGCAAATTTGATAGCAGAGCAACACATATGGGTGGTAGCGGATCCGTATGCGAAAAACGAAGCGTTTAATGTGAACAATGGAGATGTGTTTAAATGGCAGCATTTTTGGGAGGTGTTGGCTGAGCAGTTTGGGATCGAGGAGTATGGGTTTGATGATGAGGAGGGTGGTAGGCTGAGGGAGAATGAGTTGCAGACGACTAAGTTGGAGGAGGTGGCGGTGTGGTGGTTTGCTGACTTTGTGTTCGGCGGGGAGGCTTTGTTGGTCAGTATGAATAAGAGCAAAGAGCATGGCTTTTTGGGGTTCAGGAATTCCAAAAAGTCCTTCATTTCGTGGATTAAGAAGATGAAGGCTTACAAGATTGTTCCATGA

Protein Analysis

161

Amino Acids

18.34

Weight (kDa)

5.68

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24220 AT4G24220
fragaria_vesca FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 83, 101, 152, 329, 360
AclWI GGATC 3 cut(s) 149, 162, 254
AcsI RAATTY 2 cut(s) 118, 421
AgsI TTSAA 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AlwI GGATC 3 cut(s) 149, 162, 254
ApeKI GCWGC 2 cut(s) 32, 211
ApoI RAATTY 2 cut(s) 118, 421
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspLEI GCGC 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 72
BamHI GGATCC 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 61
BbvCI CCTCAGC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 19, 223
BcnI CCSGG 1 cut(s) 72
BisI GCNGC 3 cut(s) 33, 84, 212
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 3 cut(s) 34, 85, 213
Bme1390I CCNGG 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 287
Bpu1102I GCTNAGC 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 72
BsaXI ACNNNNNCTCC 6 cut(s) 245, 275, 284, 314, 356, 386
BseGI GGATG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 225, 278
BseRI GAGGAG 3 cut(s) 266, 287, 335
BseXI GCAGC 2 cut(s) 19, 223
BsiSI CCGG 1 cut(s) 72
Bsp143I GATC 2 cut(s) 154, 246
Bsp1720I GCTNAGC 1 cut(s) 234
BspACI CCGC 5 cut(s) 83, 101, 152, 329, 360
BspCNI CTCAG 2 cut(s) 226, 279
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 3 cut(s) 149, 162, 254
BssMI GATC 2 cut(s) 154, 246
BstDEI CTNAG 3 cut(s) 234, 287, 312
BstF5I GGATG 1 cut(s) 118
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 2 cut(s) 157, 249
BstMBI GATC 2 cut(s) 154, 246
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 19, 223
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BtsCI GGATG 1 cut(s) 118
CfoI GCGC 1 cut(s) 19
CviAII CATG 2 cut(s) 401, 480
CviJI RGCY 7 cut(s) 86, 107, 233, 286, 368, 405, 464
CviKI_1 RGCY 7 cut(s) 86, 107, 233, 286, 368, 405, 464
DdeI CTNAG 3 cut(s) 234, 287, 312
DpnI GATC 2 cut(s) 156, 248
DpnII GATC 2 cut(s) 154, 246
DraI TTTAAA 1 cut(s) 205
EcoRI GAATTC 1 cut(s) 421
FaeI CATG 2 cut(s) 404, 483
FatI CATG 2 cut(s) 400, 479
FauI CCCGC 1 cut(s) 353
FauNDI CATATG 1 cut(s) 140
Fnu4HI GCNGC 3 cut(s) 33, 84, 212
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 3 cut(s) 33, 84, 212
GlaI GCGC 1 cut(s) 18
GluI GCNGC 3 cut(s) 33, 84, 212
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 19
Hin1II CATG 2 cut(s) 404, 483
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 418
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 4 cut(s) 40, 44, 445, 454
HpyCH4V TGCA 2 cut(s) 116, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 3 cut(s) 234, 287, 312
Hsp92II CATG 2 cut(s) 404, 483
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 2 cut(s) 154, 246
LpnPI CCDG 2 cut(s) 85, 403
Lsp1109I GCAGC 2 cut(s) 19, 223
LweI GCATC 1 cut(s) 103
MalI GATC 2 cut(s) 156, 248
MboI GATC 2 cut(s) 154, 246
MboII GAAGA 2 cut(s) 66, 466
MflI RGATCY 1 cut(s) 154
MluCI AATT 2 cut(s) 118, 421
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 8 cut(s) 217, 244, 265, 268, 282, 313, 316, 358
MseI TTAA 3 cut(s) 180, 204, 450
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 72
NdeI CATATG 1 cut(s) 140
NdeII GATC 2 cut(s) 154, 246
NlaIII CATG 2 cut(s) 404, 483
NlaIV GGNNCC 1 cut(s) 156
PkrI GCNGC 3 cut(s) 34, 85, 213
PspN4I GGNNCC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 3 cut(s) 180, 204, 450
SatI GCNGC 3 cut(s) 33, 84, 212
Sau3AI GATC 2 cut(s) 154, 246
ScrFI CCNGG 1 cut(s) 72
SetI ASST 2 cut(s) 228, 327
SfaNI GCATC 1 cut(s) 103
SgeI CNNG 8 cut(s) 83, 84, 99, 262, 373, 413, 430, 456
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse9I AATT 2 cut(s) 118, 421
SsiI CCGC 5 cut(s) 83, 101, 152, 329, 360
StyD4I CCNGG 1 cut(s) 70
TaqI TCGA 1 cut(s) 249
TasI AATT 2 cut(s) 118, 421
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 3 cut(s) 180, 204, 450
Tru9I TTAA 3 cut(s) 180, 204, 450
TseI GCWGC 2 cut(s) 32, 211
TspDTI ATGAA 4 cut(s) 17, 398, 427, 473
TspGWI ACGGA 1 cut(s) 147
XapI RAATTY 2 cut(s) 118, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.