Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8060540.1

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 568

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8060540.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

tcggcgtgacgggaatagtcggcaacagcctcgccgagatcctccctctctccgacacccccggcggtccatggaaggtctacggcgtcgcccgccgtccccggcccaactggaacgccgatcaccccgtcgagtacatccagtgcgacgtctccgacgccgaggacgccaaggccaagctcacgccgttgaccgacgtcactcacctcttctacgtcacctggtccagccgatccaccgaggccgagaattgcgaggccaacgccgtgatgctgcgcaacgtcttgagctccgtgatcccaaacgcgccgaatctgaagcacatatgcctccagacgggaggcaaacactacatcgggccgttcgagtcgtgggggaagatcgagccgcacgacacgccgttcacggaggatctgccccggttgagctaccagaatttctactacacactcgaagatatattgttcgaagaggtggagaagaaagaggagctgacttggtcggtgcaccgacccgacaccattttcgggttttcgccttatagcttgatgaacattgtaggcactc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

188

Amino Acids

21.14

Weight (kDa)

4.98

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	152, 200
Acc16I	TGCGCA	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	80
AccII	CGCG	1 cut(s)	307
AciI	CCGC	3 cut(s)	65, 93, 388
AclWI	GGATC	4 cut(s)	33, 227, 291, 419
AcsI	RAATTY	1 cut(s)	435
AcuI	CTGAAG	1 cut(s)	337
AcyI	GRCGYC	5 cut(s)	86, 149, 158, 167, 197
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	336, 527
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	5 cut(s)	180, 290, 428, 492, 545
AluI	AGCT	5 cut(s)	180, 290, 428, 492, 545
Alw21I	GWGCWC	2 cut(s)	292, 509
Alw26I	GTCTC	1 cut(s)	156
Alw44I	GTGCAC	1 cut(s)	505
AlwI	GGATC	4 cut(s)	33, 227, 291, 419
AoxI	GGCC	5 cut(s)	103, 173, 242, 257, 358
ApaLI	GTGCAC	1 cut(s)	505
ApeKI	GCWGC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	435
ArsI	GACNNNNNNTTYG	2 cut(s)	508, 540
AspLEI	GCGC	2 cut(s)	278, 309
AspS9I	GGNCC	4 cut(s)	67, 104, 224, 358
AsuC2I	CCSGG	3 cut(s)	62, 102, 420
AsuHPI	GGTGA	3 cut(s)	115, 196, 210
AsuII	TTCGAA	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	67, 224
BaeGI	GKGCMC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	292
Bbv12I	GWGCWC	2 cut(s)	292, 509
BbvI	GCAGC	1 cut(s)	260
BceAI	ACGGC	6 cut(s)	80, 99, 171, 250, 345, 384
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BciT130I	CCWGG	1 cut(s)	222
BcnI	CCSGG	3 cut(s)	62, 102, 420
BcoDI	GTCTC	1 cut(s)	156
BisI	GCNGC	2 cut(s)	274, 388
BlsI	GCNGC	2 cut(s)	275, 389
Bme1390I	CCNGG	4 cut(s)	62, 102, 222, 420
Bme18I	GGWCC	2 cut(s)	67, 224
BmgT120I	GGNCC	4 cut(s)	67, 104, 224, 358
BmrFI	CCNGG	4 cut(s)	62, 102, 222, 420
BmsI	GCATC	1 cut(s)	260
BoxI	GACNNNNGTC	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	306
BpuMI	CCSGG	3 cut(s)	62, 102, 420
BsaHI	GRCGYC	5 cut(s)	86, 149, 158, 167, 197
BsaJI	CCNNGG	7 cut(s)	60, 70, 100, 161, 170, 239, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 527
Bse1I	ACTGG	2 cut(s)	115, 141
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	7 cut(s)	60, 70, 100, 161, 170, 239, 418
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	336, 527
BseNI	ACTGG	2 cut(s)	115, 141
BseRI	GAGGAG	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	509
BseXI	GCAGC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	5 cut(s)	105, 175, 244, 259, 360
BsiHKAI	GWGCWC	2 cut(s)	292, 509
BsiSI	CCGG	3 cut(s)	62, 102, 420
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	336, 527
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	5 cut(s)	105, 175, 244, 259, 360
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	292, 509
Bsp143I	GATC	6 cut(s)	38, 120, 232, 296, 380, 411
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	3 cut(s)	65, 93, 388
BspANI	GGCC	5 cut(s)	105, 175, 244, 259, 360
BspFNI	CGCG	1 cut(s)	307
BspPI	GGATC	4 cut(s)	33, 227, 291, 419
BspT104I	TTCGAA	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	115, 141
BssECI	CCNNGG	7 cut(s)	60, 70, 100, 161, 170, 239, 418
BssMI	GATC	6 cut(s)	38, 120, 232, 296, 380, 411
BssNI	GRCGYC	5 cut(s)	86, 149, 158, 167, 197
BssT1I	CCWWGG	2 cut(s)	70, 170
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	2 cut(s)	214, 464
BstACI	GRCGYC	5 cut(s)	86, 149, 158, 167, 197
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	307
BstHHI	GCGC	2 cut(s)	278, 309
BstKTI	GATC	6 cut(s)	41, 123, 235, 299, 383, 414
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	6 cut(s)	38, 120, 232, 296, 380, 411
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 166, 396
BstNI	CCWGG	1 cut(s)	222
BstPAI	GACNNNNGTC	1 cut(s)	196
BstSCI	CCNGG	4 cut(s)	60, 100, 220, 418
BstSLI	GKGCMC	1 cut(s)	509
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	2 cut(s)	38, 411
BstYI	RGATCY	2 cut(s)	38, 411
BsuRI	GGCC	5 cut(s)	105, 175, 244, 259, 360
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	2 cut(s)	278, 309
Cfr13I	GGNCC	4 cut(s)	67, 104, 224, 358
CseI	GACGC	3 cut(s)	75, 166, 175
CsiI	ACCWGGT	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	1 cut(s)	71
CviQI	GTAC	1 cut(s)	135
DpnI	GATC	6 cut(s)	40, 122, 234, 298, 382, 413
DpnII	GATC	6 cut(s)	38, 120, 232, 296, 380, 411
Eam1104I	CTCTTC	2 cut(s)	214, 464
EarI	CTCTTC	2 cut(s)	214, 464
Ecl136II	GAGCTC	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	70, 170
Eco24I	GRGCYC	1 cut(s)	292
Eco47I	GGWCC	2 cut(s)	67, 224
Eco53kI	GAGCTC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	337
EcoICRI	GAGCTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	2 cut(s)	70, 170
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	2 cut(s)	70, 170
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	1 cut(s)	74
FaiI	YATR	5 cut(s)	72, 325, 327, 460, 542
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	1 cut(s)	70
FauI	CCCGC	1 cut(s)	100
FauNDI	CATATG	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	2 cut(s)	274, 388
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	2 cut(s)	274, 388
FspI	TGCGCA	1 cut(s)	277
GlaI	GCGC	2 cut(s)	277, 308
GluI	GCNGC	2 cut(s)	274, 388
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	5 cut(s)	105, 175, 244, 259, 360
HapII	CCGG	3 cut(s)	62, 102, 420
HgaI	GACGC	3 cut(s)	75, 166, 175
HhaI	GCGC	2 cut(s)	278, 309
Hin1I	GRCGYC	5 cut(s)	86, 149, 158, 167, 197
Hin1II	CATG	1 cut(s)	74
Hin6I	GCGC	2 cut(s)	276, 307
HinP1I	GCGC	2 cut(s)	276, 307
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HinfI	GANTC	2 cut(s)	312, 367
HpaII	CCGG	3 cut(s)	62, 102, 420
HphI	GGTGA	3 cut(s)	115, 196, 210
Hpy166II	GTNNAC	4 cut(s)	81, 191, 404, 507
Hpy188I	TCNGA	3 cut(s)	54, 156, 317
Hpy188III	TCNNGA	2 cut(s)	285, 333
Hpy8I	GTNNAC	4 cut(s)	81, 191, 404, 507
Hpy99I	CGWCG	5 cut(s)	91, 133, 151, 160, 199
HpyAV	CCTTC	1 cut(s)	69
HpyCH4IV	ACGT	4 cut(s)	149, 197, 215, 281
HpyCH4V	TGCA	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 166, 396
HpySE526I	ACGT	4 cut(s)	149, 197, 215, 281
Hsp92I	GRCGYC	5 cut(s)	86, 149, 158, 167, 197
Hsp92II	CATG	1 cut(s)	74
HspAI	GCGC	2 cut(s)	276, 307
Kzo9I	GATC	6 cut(s)	38, 120, 232, 296, 380, 411
LmnI	GCTCC	2 cut(s)	295, 489
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	1 cut(s)	260
MabI	ACCWGGT	1 cut(s)	220
MaeII	ACGT	4 cut(s)	149, 197, 215, 281
MaeIII	GTNAC	3 cut(s)	6, 198, 216
MalI	GATC	6 cut(s)	40, 122, 234, 298, 382, 413
MboI	GATC	6 cut(s)	38, 120, 232, 296, 380, 411
MboII	GAAGA	5 cut(s)	201, 390, 466, 481, 492
MflI	RGATCY	2 cut(s)	38, 411
MhlI	GDGCHC	2 cut(s)	292, 509
MluCI	AATT	2 cut(s)	249, 435
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	2 cut(s)	77, 179
MspI	CCGG	3 cut(s)	62, 102, 420
MspR9I	CCNGG	4 cut(s)	62, 102, 222, 420
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	3 cut(s)	92, 166, 396
NciI	CCSGG	3 cut(s)	62, 102, 420
NcoI	CCATGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	6 cut(s)	38, 120, 232, 296, 380, 411
NlaIII	CATG	1 cut(s)	74
NmeAIII	GCCGAG	3 cut(s)	60, 186, 270
NmuCI	GTSAC	3 cut(s)	6, 198, 216
NsbI	TGCGCA	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	467
PcsI	WCGNNNNNNNCGW	2 cut(s)	362, 389
PfeI	GAWTC	1 cut(s)	312
PflFI	GACNNNGTC	1 cut(s)	498
PkrI	GCNGC	2 cut(s)	275, 389
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
PshAI	GACNNNNGTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspPI	GGNCC	4 cut(s)	67, 104, 224, 358
PsuI	RGATCY	2 cut(s)	38, 411
PsyI	GACNNNGTC	1 cut(s)	498
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	292
SatI	GCNGC	2 cut(s)	274, 388
Sau3AI	GATC	6 cut(s)	38, 120, 232, 296, 380, 411
Sau96I	GGNCC	4 cut(s)	67, 104, 224, 358
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	4 cut(s)	62, 102, 222, 420
SduI	GDGCHC	2 cut(s)	292, 509
SexAI	ACCWGGT	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	260
SfuI	TTCGAA	1 cut(s)	467
SinI	GGWCC	2 cut(s)	67, 224
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	2 cut(s)	249, 435
SsiI	CCGC	3 cut(s)	65, 93, 388
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	4 cut(s)	60, 100, 220, 418
StyI	CCWWGG	2 cut(s)	70, 170
TaiI	ACGT	4 cut(s)	152, 200, 218, 284
TaqI	TCGA	5 cut(s)	131, 365, 383, 452, 467
TaqII	GACCGA	1 cut(s)	208
TasI	AATT	2 cut(s)	249, 435
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	312
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	3 cut(s)	6, 198, 216
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	3 cut(s)	6, 198, 216
TspDTI	ATGAA	1 cut(s)	565
TspGWI	ACGGA	2 cut(s)	282, 421
TspRI	CASTG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	498
VneI	GTGCAC	1 cut(s)	505
VpaK11BI	GGWCC	2 cut(s)	67, 224
XapI	RAATTY	1 cut(s)	435
XmiI	GTMKAC	1 cut(s)	80
ZraI	GACGTC	2 cut(s)	150, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.