Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Forward (+)

69514812 .. 69515621

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG492200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCTCCGCAACGTGCTACGTGTCGTTATCCCAGCGGCTCCAAATCTCCGCCACATCAGCCTCCAAACTGGAACCAAACACTATGTTGGGCCGTTCGAAACTCTTGGTAAGATCCAAGCCCATGATCCGCCTTTCACGGAGGAGTTGCCTAGACTTGATGTGCCCAATTTCTACTACACCCTAGAGGACATCCTTTTCGAAGAGGCTAACAAGAAAGAGGGCCTGACTTGGTCGGTGCACCGGCCCAATCATATATTCGGGTTTTCCCCATATAGCTTGATGAACATAATTGGCGCTCTTTGTGTTTATGCTTCAATATGTAAGCACGAGGGGAAACCATTGCTATTTCCAGGCAGCAAAGAAGCTTGGGAATATTACGCGGTGGCTTCGGATGCAGATCTGATTGCGGAGCAGCATATATGGGCCGCGGTGGATCCAAATGCCAAAAACGAAGCCTTTAACATCAACAATGGGGATGTGTTTATGTGGAAGAAACTTTGGAAGGTGTTGGCTGAGGAATTTGGGATTGAGGAGTATGGTTTTGAGGAGAAGGGTGAGAAGTTGAGCTTGGTGGATGAGATGAAGGACAAAAGTGGTGTGTGGGAAGAGATAGTGAGGAAGAATCAGCTGCAGCCCACCAAATTGGAGGAGGTTGCGGTTTGGTGGTTTGCTGACCTTGTTTTGGGTATGATGCCCGTGTTGGACAGTATGAATAAGAGCAAAGAGCATGGCTTTTTGGGGTTCAGGAATTCCGAAAAGTCATTCGCATCGTGGATTGAAAAAATGAAAGCTCACAAGATTGTGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

269

Amino Acids

30.86

Weight (kDa)

5.65

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRISE	PF22917	12 - 269	8e-25	PRISE-like Rossmann-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	380, 428
AciI	CCGC	9 cut(s)	7, 35, 49, 128, 380, 407, 426, 428, 656
AclWI	GGATC	4 cut(s)	106, 119, 428, 441
AcsI	RAATTY	2 cut(s)	518, 748
AfiI	CCNNNNNNNGG	1 cut(s)	682
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	315, 779
AjnI	CCWGG	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	4 cut(s)	239, 271, 551, 583
AluBI	AGCT	5 cut(s)	276, 365, 567, 628, 791
AluI	AGCT	5 cut(s)	276, 365, 567, 628, 791
Alw21I	GWGCWC	1 cut(s)	240
Alw44I	GTGCAC	1 cut(s)	236
AlwI	GGATC	4 cut(s)	106, 119, 428, 441
AoxI	GGCC	4 cut(s)	89, 220, 242, 423
ApaLI	GTGCAC	1 cut(s)	236
ApeKI	GCWGC	4 cut(s)	354, 412, 628, 631
ApoI	RAATTY	2 cut(s)	518, 748
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	4 cut(s)	89, 220, 243, 423
AsuHPI	GGTGA	1 cut(s)	566
AsuII	TTCGAA	2 cut(s)	96, 198
BaeGI	GKGCMC	2 cut(s)	165, 240
BamHI	GGATCC	1 cut(s)	433
BauI	CACGAG	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	4 cut(s)	366, 424, 615, 643
BceAI	ACGGC	2 cut(s)	76, 790
BciT130I	CCWGG	1 cut(s)	351
BfaI	CTAG	2 cut(s)	150, 182
BfmI	CTRYAG	1 cut(s)	629
BfoI	RGCGCY	1 cut(s)	297
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	6 cut(s)	36, 355, 413, 426, 629, 632
BlsI	GCNGC	6 cut(s)	37, 356, 414, 427, 630, 633
Bme1390I	CCNGG	1 cut(s)	351
BmgT120I	GGNCC	4 cut(s)	89, 220, 243, 423
BmiI	GGNNCC	3 cut(s)	39, 73, 435
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	3 cut(s)	382, 681, 776
Bpu10I	CCTNAGC	1 cut(s)	513
Bpu14I	TTCGAA	2 cut(s)	96, 198
BsaAI	YACGTR	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	1 cut(s)	682
Bse118I	RCCGGY	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	4 cut(s)	189, 397, 481, 580
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	682
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	4 cut(s)	155, 545, 560, 662
BseSI	GKGCMC	2 cut(s)	165, 240
BseXI	GCAGC	4 cut(s)	366, 424, 615, 643
BseYI	CCCAGC	1 cut(s)	31
Bsh1236I	CGCG	2 cut(s)	380, 428
BshFI	GGCC	4 cut(s)	91, 222, 244, 425
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	682
BsnI	GGCC	4 cut(s)	91, 222, 244, 425
Bsp119I	TTCGAA	2 cut(s)	96, 198
Bsp1286I	GDGCHC	2 cut(s)	165, 240
Bsp143I	GATC	4 cut(s)	111, 124, 397, 433
BspACI	CCGC	9 cut(s)	7, 35, 49, 128, 380, 407, 426, 428, 656
BspANI	GGCC	4 cut(s)	91, 222, 244, 425
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	2 cut(s)	380, 428
BspLI	GGNNCC	3 cut(s)	39, 73, 435
BspMAI	CTGCAG	1 cut(s)	633
BspPI	GGATC	4 cut(s)	106, 119, 428, 441
BspT104I	TTCGAA	2 cut(s)	96, 198
BsrDI	GCAATG	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	4 cut(s)	111, 124, 397, 433
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	707
Bst6I	CTCTTC	2 cut(s)	195, 600
BstBAI	YACGTR	1 cut(s)	20
BstBI	TTCGAA	2 cut(s)	96, 198
BstDEI	CTNAG	1 cut(s)	513
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	4 cut(s)	189, 397, 481, 580
BstFNI	CGCG	2 cut(s)	380, 428
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	4 cut(s)	114, 127, 400, 436
BstMBI	GATC	4 cut(s)	111, 124, 397, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 392
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	629
BstSLI	GKGCMC	2 cut(s)	165, 240
BstUI	CGCG	2 cut(s)	380, 428
BstV1I	GCAGC	4 cut(s)	366, 424, 615, 643
BstX2I	RGATCY	3 cut(s)	111, 397, 433
BstXI	CCANNNNNNTGG	1 cut(s)	643
BstYI	RGATCY	3 cut(s)	111, 397, 433
BsuRI	GGCC	4 cut(s)	91, 222, 244, 425
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	4 cut(s)	189, 397, 481, 580
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	240
Cfr13I	GGNCC	4 cut(s)	89, 220, 243, 423
Cfr42I	CCGCGG	1 cut(s)	429
CviAII	CATG	2 cut(s)	122, 728
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	4 cut(s)	113, 126, 399, 435
DpnII	GATC	4 cut(s)	111, 124, 397, 433
Eam1104I	CTCTTC	2 cut(s)	195, 600
EarI	CTCTTC	2 cut(s)	195, 600
EciI	GGCGGA	2 cut(s)	38, 117
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	748
EcoRII	CCWGG	1 cut(s)	349
FaeI	CATG	2 cut(s)	125, 731
FalI	AAGNNNNNCTT	2 cut(s)	551, 583
FatI	CATG	2 cut(s)	121, 727
Fnu4HI	GCNGC	6 cut(s)	36, 355, 413, 426, 629, 632
FokI	GGATG	4 cut(s)	176, 404, 488, 587
Fsp4HI	GCNGC	6 cut(s)	36, 355, 413, 426, 629, 632
FspBI	CTAG	2 cut(s)	150, 182
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	6 cut(s)	36, 355, 413, 426, 629, 632
GsaI	CCCAGC	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	4 cut(s)	91, 222, 244, 425
HapII	CCGG	1 cut(s)	241
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	125, 731
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	1 cut(s)	622
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	391, 402, 754
Hpy188III	TCNNGA	1 cut(s)	745
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	3 cut(s)	496, 544, 577
HpyCH4III	ACNGT	1 cut(s)	707
HpyCH4IV	ACGT	2 cut(s)	12, 19
HpyCH4V	TGCA	3 cut(s)	238, 395, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 392
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	2 cut(s)	12, 19
Hsp92II	CATG	2 cut(s)	125, 731
HspAI	GCGC	1 cut(s)	294
KspI	CCGCGG	1 cut(s)	429
Kzo9I	GATC	4 cut(s)	111, 124, 397, 433
LmnI	GCTCC	3 cut(s)	9, 43, 409
LpnPI	CCDG	7 cut(s)	45, 54, 236, 254, 336, 363, 730
Lsp1109I	GCAGC	4 cut(s)	366, 424, 615, 643
LweI	GCATC	3 cut(s)	382, 681, 776
MaeI	CTAG	2 cut(s)	150, 182
MaeII	ACGT	2 cut(s)	12, 19
MalI	GATC	4 cut(s)	113, 126, 399, 435
MboI	GATC	4 cut(s)	111, 124, 397, 433
MboII	GAAGA	4 cut(s)	212, 502, 617, 631
MflI	RGATCY	3 cut(s)	111, 397, 433
MhlI	GDGCHC	2 cut(s)	165, 240
MluCI	AATT	5 cut(s)	166, 288, 518, 641, 748
MmeI	TCCRAC	1 cut(s)	681
MseI	TTAA	1 cut(s)	459
MspA1I	CMGCKG	3 cut(s)	35, 428, 628
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	2 cut(s)	380, 428
MwoI	GCNNNNNNNGC	2 cut(s)	57, 392
NdeII	GATC	4 cut(s)	111, 124, 397, 433
NlaIII	CATG	2 cut(s)	125, 731
NlaIV	GGNNCC	3 cut(s)	39, 73, 435
NspV	TTCGAA	2 cut(s)	96, 198
PfeI	GAWTC	1 cut(s)	622
PflFI	GACNNNGTC	1 cut(s)	229
PkrI	GCNGC	6 cut(s)	37, 356, 414, 427, 630, 633
Ppu21I	YACGTR	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	3 cut(s)	39, 73, 435
PspPI	GGNCC	4 cut(s)	89, 220, 243, 423
PstI	CTGCAG	1 cut(s)	633
PsuI	RGATCY	3 cut(s)	111, 397, 433
PsyI	GACNNNGTC	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	628
SacII	CCGCGG	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	6 cut(s)	36, 355, 413, 426, 629, 632
Sau3AI	GATC	4 cut(s)	111, 124, 397, 433
Sau96I	GGNCC	4 cut(s)	89, 220, 243, 423
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	165, 240
SfaNI	GCATC	3 cut(s)	382, 681, 776
SfcI	CTRYAG	1 cut(s)	629
Sfr303I	CCGCGG	1 cut(s)	429
SfuI	TTCGAA	2 cut(s)	96, 198
SgrBI	CCGCGG	1 cut(s)	429
Sse9I	AATT	5 cut(s)	166, 288, 518, 641, 748
SsiI	CCGC	9 cut(s)	7, 35, 49, 128, 380, 407, 426, 428, 656
SspI	AATATT	1 cut(s)	374
SspMI	CTAG	2 cut(s)	150, 182
StyD4I	CCNGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	707
TaiI	ACGT	2 cut(s)	15, 22
TaqI	TCGA	2 cut(s)	96, 198
TasI	AATT	5 cut(s)	166, 288, 518, 641, 748
TauI	GCSGC	2 cut(s)	38, 428
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TseI	GCWGC	4 cut(s)	354, 412, 628, 631
TspDTI	ATGAA	4 cut(s)	296, 596, 725, 800
TspGWI	ACGGA	1 cut(s)	152
Tth111I	GACNNNGTC	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	518, 748
XspI	CTAG	2 cut(s)	150, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.