Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Forward (+)

66230764 .. 66231294

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG497000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAACATAATTGGCGCTCTTTGTGTTTATGCTTCAATATGTAAGCACGAGGGGAAACCATTGATATTTCCAGGCAGCAAAGAAGCTTGGGAATATTACGCGGTGGCTTCGGATGCAGATCTGATTGCGGAGCAACATATATGGGCCTCGGTGGATCCAAATGCCAAAAACGAAGCCTTTAACATCAACAATGGGGATGTGTTTAGGTGGAAGAAACTTTGGAAGGTGTTGGCTGAGGAATTTGGGATTGAGGAGTACGGTTTTGAGGAGAAGAGTGAGAAGTTGAGCTTGGTGGATGAGATGAAGGACAAAAGTGGTGTGTGGGAAGAGATAGTGAGGAAGAATCAGCTGCAGCCCACCAAATTGGAGGAGGTTGCGGTTTGGTGGTTTGCTGACCTTGTTTTGGGTGTGATGCCCGTGTTGGACAGTATGAATAAGAGCAAAGAGCATGGCTTTTTGGGGTTCAGGAATTCCGAAAAGTCATTCGCATCGTGGATTGAAAAAATGAAAGCTCACAAGATTGTGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

176

Amino Acids

20.18

Weight (kDa)

5.33

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRISE	PF22917	7 - 176	3.5e-11	PRISE-like Rossmann-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	101
AciI	CCGC	3 cut(s)	101, 128, 377
AclWI	GGATC	2 cut(s)	149, 162
AcsI	RAATTY	2 cut(s)	239, 469
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	36, 500
AjnI	CCWGG	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	4 cut(s)	86, 288, 349, 512
AluI	AGCT	4 cut(s)	86, 288, 349, 512
AlwI	GGATC	2 cut(s)	149, 162
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	75, 349, 352
ApoI	RAATTY	2 cut(s)	239, 469
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	154
BauI	CACGAG	1 cut(s)	47
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	87, 336, 364
BceAI	ACGGC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	350
BfoI	RGCGCY	1 cut(s)	18
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	3 cut(s)	76, 350, 353
BlsI	GCNGC	3 cut(s)	77, 351, 354
Bme1390I	CCNGG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	3 cut(s)	103, 402, 497
Bpu10I	CCTNAGC	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	3 cut(s)	118, 202, 301
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	225
BseRI	GAGGAG	3 cut(s)	266, 281, 383
BseXI	GCAGC	3 cut(s)	87, 336, 364
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	403
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	118, 154
BspACI	CCGC	3 cut(s)	101, 128, 377
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	354
BspPI	GGATC	2 cut(s)	149, 162
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	118, 154
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	260, 428
Bst6I	CTCTTC	2 cut(s)	266, 321
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	3 cut(s)	118, 202, 301
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	121, 157
BstMBI	GATC	2 cut(s)	118, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstSFI	CTRYAG	1 cut(s)	350
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	87, 336, 364
BstX2I	RGATCY	2 cut(s)	118, 154
BstXI	CCANNNNNNTGG	1 cut(s)	364
BstYI	RGATCY	2 cut(s)	118, 154
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	118, 202, 301
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	449
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	120, 156
DpnII	GATC	2 cut(s)	118, 154
Eam1104I	CTCTTC	2 cut(s)	266, 321
EarI	CTCTTC	2 cut(s)	266, 321
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	70
FaeI	CATG	1 cut(s)	452
FaiI	YATR	8 cut(s)	8, 30, 40, 138, 140, 142, 431, 450
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	1 cut(s)	448
Fnu4HI	GCNGC	3 cut(s)	76, 350, 353
FokI	GGATG	3 cut(s)	125, 209, 308
Fsp4HI	GCNGC	3 cut(s)	76, 350, 353
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	3 cut(s)	76, 350, 353
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	452
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	112, 123, 475
Hpy188III	TCNNGA	1 cut(s)	466
HpyAV	CCTTC	2 cut(s)	217, 298
HpyCH4III	ACNGT	2 cut(s)	260, 428
HpyCH4V	TGCA	2 cut(s)	116, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	452
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	118, 154
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	57, 84, 451
Lsp1109I	GCAGC	3 cut(s)	87, 336, 364
LweI	GCATC	3 cut(s)	103, 402, 497
MalI	GATC	2 cut(s)	120, 156
MboI	GATC	2 cut(s)	118, 154
MboII	GAAGA	4 cut(s)	223, 283, 338, 352
MflI	RGATCY	2 cut(s)	118, 154
MluCI	AATT	4 cut(s)	9, 239, 362, 469
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	8 cut(s)	43, 157, 229, 244, 259, 330, 361, 364
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	118, 154
NlaIII	CATG	1 cut(s)	452
NlaIV	GGNNCC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	77, 351, 354
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	354
PsuI	RGATCY	2 cut(s)	118, 154
PvuII	CAGCTG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	3 cut(s)	76, 350, 353
Sau3AI	GATC	2 cut(s)	118, 154
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	8 cut(s)	88, 209, 228, 290, 351, 375, 399, 514
SfaNI	GCATC	3 cut(s)	103, 402, 497
SfcI	CTRYAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	9, 239, 362, 469
SsiI	CCGC	3 cut(s)	101, 128, 377
SspI	AATATT	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	260, 428
TasI	AATT	4 cut(s)	9, 239, 362, 469
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseI	GCWGC	3 cut(s)	75, 349, 352
TspDTI	ATGAA	4 cut(s)	17, 317, 446, 521
XapI	RAATTY	2 cut(s)	239, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.