Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Reverse (-)

4987521 .. 4988834

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1073400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAGCTTGTGGTGGGCCGGAGTTGCTAGCGCTGCCACGAAAAAATTGGAAGGAGTTGACGCGTCATCATCACGAGGTCATCAAAGCGTGGCGCTAGTGGTCGGCGTGACGGGCATAGTGGGCAACAGCCTATCTGAAATCCTCCCACTCCCTGATACCCCCGGCGGTCCGTGGAAAGTGTACGGGGTCGCACGCCGCCCCCGCCCAAACTGGAACGTTGATCATCCTGTTGACTACATCCAATGTGACGTGTCTGATGCGGAAGACACCAAAATCAAGCTGTCACAATTAACCGATGTCACGCACATATTTTACGTGACATGGACCAGTAAAGCCACCGAGGTCGAGAACTGCCAGGCCAACGGGGCCATGCTCCGCAACGTCTTGCGTGCAATTATCCCCGTGGCTCCGAACCTCTGCCACGTGTCCTTGCAGACCGGGGCCAAACACTATATCGGACCGTTTGAGTCTATAGGGAAAATCAAAGCCCACGACCCGCCGTTTACGGAGGACTTGCCCAGGCTTGACGTGCCCAATTTTTACTACACTCTTGAAGACATTTTATTCGAAGAGGTTGAGAAAAAAAAGGGTTTAACTTGGTCGGTACATCGGCCTAATAATATTTTTGGGTTTTCCCCTTATAGCTTGATGAACATAATCGGTGCGCTTTGTGTTTATGCTGCTATATGTAAGAAGGAAGGAAGACCATTGAAGTTTCCCGGTAGCAAAGCGGCTTGGGAGTGTTATGCGGTGGCTTCGGATGCAAATTTGATAGCGGAGCAGCATATATGGGCGGCGGTGGATCCGTATGCGAAAAACGAAGCGTTTAATGTGAACAATGGGGATGTGTTTAAGTGGAAGCATTTTTGGAAGGTGTTGGCTGAGCAGTTTGGGATTGAGGAGTATGGGTTTGATGAGGAGGAGGGTGGTAGGCTGAGGTTGGTGGAGATGATGGAGGGGAAAGTTGGTGTGTGGGAGGAGATTGTGAGGGAGAATGAGCTGCAGCCGACCAAGTTGGAGGAGGTGGCGGTGTGGTGGTTTGCTGACTTAGTGTTTGGTGGGGAGGCTGTGTTGGACAGTACGAATAAGAGCAAAGAGCATGGCTTTTTGGGGTTCAGGAATTCCAAAAAGTCCTTCATTTCGTGGATTAAGAAGATGAAGGCTTTTGTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

392

Amino Acids

43.79

Weight (kDa)

5.87

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRISE	PF22917	88 - 335	1.1e-28	PRISE-like Rossmann-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	2 cut(s)	797, 810
AcsI	RAATTY	2 cut(s)	766, 1120
AcvI	CACGTG	1 cut(s)	424
AfaI	GTAC	3 cut(s)	182, 606, 1081
AfeI	AGCGCT	1 cut(s)	31
AflIII	ACRYGT	3 cut(s)	60, 249, 423
AgsI	TTSAA	2 cut(s)	554, 712
AjiI	CACGTC	2 cut(s)	250, 529
AjnI	CCWGG	2 cut(s)	354, 518
AjuI	GAANNNNNNNTTGG	2 cut(s)	1118, 1150
AluBI	AGCT	4 cut(s)	6, 280, 645, 1000
AluI	AGCT	4 cut(s)	6, 280, 645, 1000
AlwI	GGATC	2 cut(s)	797, 810
Aor51HI	AGCGCT	1 cut(s)	31
AoxI	GGCC	5 cut(s)	15, 357, 366, 441, 611
ApeKI	GCWGC	5 cut(s)	32, 680, 781, 1000, 1003
ApoI	RAATTY	2 cut(s)	766, 1120
ArsI	GACNNNNNNTTYG	4 cut(s)	548, 580, 1037, 1069
AspLEI	GCGC	3 cut(s)	32, 94, 667
AspS9I	GGNCC	6 cut(s)	15, 167, 324, 366, 441, 458
AsuC2I	CCSGG	3 cut(s)	162, 439, 720
AsuII	TTCGAA	1 cut(s)	567
AsuNHI	GCTAGC	1 cut(s)	26
AvaII	GGWCC	3 cut(s)	167, 324, 458
BaeGI	GKGCMC	1 cut(s)	534
BamHI	GGATCC	1 cut(s)	802
BauI	CACGAG	1 cut(s)	72
BbrPI	CACGTG	1 cut(s)	424
BbsI	GAAGAC	3 cut(s)	270, 561, 709
BbvCI	CCTCAGC	1 cut(s)	935
BbvI	GCAGC	5 cut(s)	19, 667, 793, 987, 1015
BccI	CCATC	1 cut(s)	946
BceAI	ACGGC	1 cut(s)	484
BciT130I	CCWGG	2 cut(s)	356, 520
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	3 cut(s)	162, 439, 720
BfaI	CTAG	2 cut(s)	27, 95
BfmI	CTRYAG	2 cut(s)	471, 1001
BfoI	RGCGCY	2 cut(s)	33, 95
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	8 cut(s)	33, 196, 681, 732, 782, 795, 1001, 1004
BlpI	GCTNAGC	1 cut(s)	882
BlsI	GCNGC	8 cut(s)	34, 197, 682, 733, 783, 796, 1002, 1005
Bme1390I	CCNGG	5 cut(s)	162, 356, 439, 520, 720
Bme18I	GGWCC	3 cut(s)	167, 324, 458
BmgBI	CACGTC	2 cut(s)	250, 529
BmgT120I	GGNCC	6 cut(s)	15, 167, 324, 366, 441, 458
BmiI	GGNNCC	4 cut(s)	367, 408, 442, 804
BmrFI	CCNGG	5 cut(s)	162, 356, 439, 520, 720
BmsI	GCATC	2 cut(s)	247, 751
BmtI	GCTAGC	1 cut(s)	30
BpiI	GAAGAC	3 cut(s)	270, 561, 709
Bpu10I	CCTNAGC	1 cut(s)	935
Bpu1102I	GCTNAGC	1 cut(s)	882
Bpu14I	TTCGAA	1 cut(s)	567
BpuMI	CCSGG	3 cut(s)	162, 439, 720
BsaAI	YACGTR	2 cut(s)	316, 424
BsaJI	CCNNGG	6 cut(s)	160, 170, 339, 402, 438, 518
BsaXI	ACNNNNNCTCC	4 cut(s)	893, 923, 1055, 1085
Bse1I	ACTGG	2 cut(s)	215, 327
BseBI	CCWGG	2 cut(s)	356, 520
BseDI	CCNNGG	6 cut(s)	160, 170, 339, 402, 438, 518
BseGI	GGATG	4 cut(s)	223, 237, 766, 850
BseMII	CTCAG	2 cut(s)	873, 926
BseNI	ACTGG	2 cut(s)	215, 327
BseRI	GAGGAG	5 cut(s)	914, 932, 935, 992, 1034
BseSI	GKGCMC	1 cut(s)	534
BseXI	GCAGC	5 cut(s)	19, 667, 793, 987, 1015
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	5 cut(s)	17, 359, 368, 443, 613
BsiSI	CCGG	4 cut(s)	18, 162, 438, 720
BsnI	GGCC	5 cut(s)	17, 359, 368, 443, 613
Bsp119I	TTCGAA	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	2 cut(s)	220, 802
Bsp1720I	GCTNAGC	1 cut(s)	882
BspANI	GGCC	5 cut(s)	17, 359, 368, 443, 613
BspCNI	CTCAG	2 cut(s)	874, 927
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	4 cut(s)	367, 408, 442, 804
BspMAI	CTGCAG	1 cut(s)	1005
BspOI	GCTAGC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	797, 810
BspT104I	TTCGAA	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	215, 327
BssECI	CCNNGG	6 cut(s)	160, 170, 339, 402, 438, 518
BssMI	GATC	2 cut(s)	220, 802
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	356, 520
Bst4CI	ACNGT	2 cut(s)	462, 1079
Bst6I	CTCTTC	1 cut(s)	564
BstBAI	YACGTR	2 cut(s)	316, 424
BstBI	TTCGAA	1 cut(s)	567
BstC8I	GCNNGC	3 cut(s)	28, 193, 390
BstDEI	CTNAG	3 cut(s)	882, 935, 1048
BstDSI	CCRYGG	2 cut(s)	170, 402
BstF5I	GGATG	4 cut(s)	223, 237, 766, 850
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	2 cut(s)	33, 95
BstHHI	GCGC	3 cut(s)	32, 94, 667
BstKTI	GATC	2 cut(s)	223, 805
BstMBI	GATC	2 cut(s)	220, 802
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 32, 111, 120, 201, 365, 529, 761
BstNI	CCWGG	2 cut(s)	356, 520
BstSCI	CCNGG	5 cut(s)	160, 354, 437, 518, 718
BstSFI	CTRYAG	2 cut(s)	471, 1001
BstSLI	GKGCMC	1 cut(s)	534
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	5 cut(s)	19, 667, 793, 987, 1015
BstV2I	GAAGAC	3 cut(s)	270, 561, 709
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BsuRI	GGCC	5 cut(s)	17, 359, 368, 443, 613
BtgI	CCRYGG	2 cut(s)	170, 402
BtrI	CACGTC	2 cut(s)	250, 529
BtsCI	GGATG	4 cut(s)	223, 237, 766, 850
Cac8I	GCNNGC	3 cut(s)	28, 193, 390
CfoI	GCGC	3 cut(s)	32, 94, 667
Cfr13I	GGNCC	6 cut(s)	15, 167, 324, 366, 441, 458
CpoI	CGGWCCG	2 cut(s)	167, 458
CseI	GACGC	2 cut(s)	51, 68
Csp6I	GTAC	3 cut(s)	181, 605, 1080
CspI	CGGWCCG	2 cut(s)	167, 458
CviAII	CATG	4 cut(s)	321, 370, 1100, 1173
CviQI	GTAC	3 cut(s)	181, 605, 1080
DdeI	CTNAG	3 cut(s)	882, 935, 1048
DpnI	GATC	2 cut(s)	222, 804
DpnII	GATC	2 cut(s)	220, 802
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco47I	GGWCC	3 cut(s)	167, 324, 458
Eco47III	AGCGCT	1 cut(s)	31
Eco72I	CACGTG	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	1120
EcoRII	CCWGG	2 cut(s)	354, 518
FaeI	CATG	4 cut(s)	324, 373, 1103, 1176
FatI	CATG	4 cut(s)	320, 369, 1099, 1172
FauI	CCCGC	2 cut(s)	209, 504
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	8 cut(s)	33, 196, 681, 732, 782, 795, 1001, 1004
FokI	GGATG	4 cut(s)	210, 224, 773, 857
Fsp4HI	GCNGC	8 cut(s)	33, 196, 681, 732, 782, 795, 1001, 1004
FspBI	CTAG	2 cut(s)	27, 95
GlaI	GCGC	3 cut(s)	31, 93, 666
GluI	GCNGC	8 cut(s)	33, 196, 681, 732, 782, 795, 1001, 1004
HaeII	RGCGCY	2 cut(s)	33, 95
HaeIII	GGCC	5 cut(s)	17, 359, 368, 443, 613
HapII	CCGG	4 cut(s)	18, 162, 438, 720
HgaI	GACGC	2 cut(s)	51, 68
HhaI	GCGC	3 cut(s)	32, 94, 667
Hin1II	CATG	4 cut(s)	324, 373, 1103, 1176
Hin6I	GCGC	3 cut(s)	30, 92, 665
HinP1I	GCGC	3 cut(s)	30, 92, 665
HincII	GTYRAC	2 cut(s)	58, 232
HindII	GTYRAC	2 cut(s)	58, 232
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	4 cut(s)	18, 162, 438, 720
Hpy166II	GTNNAC	5 cut(s)	58, 181, 232, 504, 835
Hpy188I	TCNGA	5 cut(s)	136, 256, 411, 458, 760
Hpy188III	TCNNGA	4 cut(s)	72, 346, 551, 1117
Hpy8I	GTNNAC	5 cut(s)	58, 181, 232, 504, 835
HpyAV	CCTTC	6 cut(s)	44, 688, 692, 865, 1144, 1153
HpyCH4III	ACNGT	2 cut(s)	462, 1079
HpyCH4IV	ACGT	6 cut(s)	216, 249, 315, 381, 423, 528
HpyCH4V	TGCA	4 cut(s)	392, 433, 764, 1003
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 32, 111, 120, 201, 365, 529, 761
HpyF3I	CTNAG	3 cut(s)	882, 935, 1048
HpySE526I	ACGT	6 cut(s)	216, 249, 315, 381, 423, 528
Hsp92II	CATG	4 cut(s)	324, 373, 1103, 1176
HspAI	GCGC	3 cut(s)	30, 92, 665
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	220, 802
LmnI	GCTCC	3 cut(s)	378, 412, 778
Lsp1109I	GCAGC	5 cut(s)	19, 667, 793, 987, 1015
LweI	GCATC	2 cut(s)	247, 751
MaeI	CTAG	2 cut(s)	27, 95
MaeII	ACGT	6 cut(s)	216, 249, 315, 381, 423, 528
MaeIII	GTNAC	5 cut(s)	106, 245, 282, 298, 316
MalI	GATC	2 cut(s)	222, 804
MboI	GATC	2 cut(s)	220, 802
MboII	GAAGA	5 cut(s)	275, 566, 581, 714, 1165
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	6 cut(s)	44, 287, 393, 535, 766, 1120
MluI	ACGCGT	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	2 cut(s)	996, 1053
MseI	TTAA	5 cut(s)	290, 593, 828, 852, 1149
MspI	CCGG	4 cut(s)	18, 162, 438, 720
MspR9I	CCNGG	5 cut(s)	162, 356, 439, 520, 720
MvaI	CCWGG	2 cut(s)	356, 520
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	8 cut(s)	23, 32, 111, 120, 201, 365, 529, 761
NciI	CCSGG	3 cut(s)	162, 439, 720
NdeII	GATC	2 cut(s)	220, 802
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	4 cut(s)	324, 373, 1103, 1176
NlaIV	GGNNCC	4 cut(s)	367, 408, 442, 804
NmuCI	GTSAC	5 cut(s)	106, 245, 282, 298, 316
NspV	TTCGAA	1 cut(s)	567
PkrI	GCNGC	8 cut(s)	34, 197, 682, 733, 783, 796, 1002, 1005
PleI	GAGTC	1 cut(s)	475
PmaCI	CACGTG	1 cut(s)	424
PmlI	CACGTG	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	475
Ppu21I	YACGTR	2 cut(s)	316, 424
Psp1406I	AACGTT	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	354, 518
PspCI	CACGTG	1 cut(s)	424
PspGI	CCWGG	2 cut(s)	354, 518
PspN4I	GGNNCC	4 cut(s)	367, 408, 442, 804
PspPI	GGNCC	6 cut(s)	15, 167, 324, 366, 441, 458
PstI	CTGCAG	1 cut(s)	1005
PsuI	RGATCY	1 cut(s)	802
RsaI	GTAC	3 cut(s)	182, 606, 1081
RsaNI	GTAC	3 cut(s)	181, 605, 1080
Rsr2I	CGGWCCG	2 cut(s)	167, 458
RsrII	CGGWCCG	2 cut(s)	167, 458
SaqAI	TTAA	5 cut(s)	290, 593, 828, 852, 1149
SatI	GCNGC	8 cut(s)	33, 196, 681, 732, 782, 795, 1001, 1004
Sau3AI	GATC	2 cut(s)	220, 802
Sau96I	GGNCC	6 cut(s)	15, 167, 324, 366, 441, 458
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	5 cut(s)	162, 356, 439, 520, 720
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	2 cut(s)	247, 751
SfcI	CTRYAG	2 cut(s)	471, 1001
SfiI	GGCCNNNNNGGCC	1 cut(s)	365
SfuI	TTCGAA	1 cut(s)	567
SinI	GGWCC	3 cut(s)	167, 324, 458
Sse9I	AATT	6 cut(s)	44, 287, 393, 535, 766, 1120
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	27, 95
StyD4I	CCNGG	5 cut(s)	160, 354, 437, 518, 718
TaaI	ACNGT	2 cut(s)	462, 1079
TaiI	ACGT	6 cut(s)	219, 252, 318, 384, 426, 531
TaqI	TCGA	2 cut(s)	345, 567
TasI	AATT	6 cut(s)	44, 287, 393, 535, 766, 1120
TauI	GCSGC	3 cut(s)	198, 734, 797
Tru1I	TTAA	5 cut(s)	290, 593, 828, 852, 1149
Tru9I	TTAA	5 cut(s)	290, 593, 828, 852, 1149
TseFI	GTSAC	5 cut(s)	106, 245, 282, 298, 316
TseI	GCWGC	5 cut(s)	32, 680, 781, 1000, 1003
Tsp45I	GTSAC	5 cut(s)	106, 245, 282, 298, 316
TspDTI	ATGAA	3 cut(s)	665, 1126, 1172
TspGWI	ACGGA	3 cut(s)	159, 521, 795
VpaK11BI	GGWCC	3 cut(s)	167, 324, 458
XapI	RAATTY	2 cut(s)	766, 1120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XspI	CTAG	2 cut(s)	27, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.