Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Reverse (-)

36662589 .. 36664251

Gene Structure 1663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G426400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAGCTGGTGGTGGGCTGGAGCTGTTGGGGCTGCTAAGAAAAAGTTGGAAGGAGCTGATACCACAGCACCAGAAGGCTACCAAAGCGTGGCGCTAGTGATCGGCTTGACGGGCATCGTGGGCAACAGCCTGGCGGAGATCCTCCCGCTCCACGACACGCCCGGCGGTCCCTGGAAGGTGTACGGCGTCGCGCGCCGTGCCCGGCCCGATTGGAGCGTTGACCACCCCGTTGACTACATCCAATGCGACATCTCGGACCCGGAAGACACCCAAGCCAAGCTCTCCGAATTAACCGACGTCACCCACATCTTCTACGTGACGTGGACGAGCAGAGCCAATGAGATCGAGAATTGCGAGGCCAACGGCGCAATGTTCCGCAACCTCCTACGTGTCGTGATCCCAGTGGCTCCTAATCTCCGCCACGTCAGCCTTCAAACCGGCACGAAACACTACCTTGGGCCGTTCGAGTGCATTGGCAAGATTAAAGCCCATGACCCGCCTTTCACCGAGGACCTGCCGAGGCTGGACGTGCCCAATTTTTACTACACGTTGGAGGACATATTGTTTGAAGAGGTCCAGAAAAAAGAGGGCCTGACTTGGTCCGTCCACAGGCCCTATAACATTTTTGGGTTTTCTCCTCACAGCTTGATGAACATAATTGGGACGCTTTGTGTCTACGCTGCTATATGCAAGAAAGAGGGCAAACCCCTGAAGTTTCCCGGCAGCAAAGTGGCTTGGGAGTGTTATGCGATGGCCTCGGACGCTGACCTGATAGCGGAGCAGCACATATGGGCGGCGGTGGACCCGAATGCCGCAAACGAAGCGTTTAATATAAACAATGGGGATGTGTTTAAGTGGAAGCAGTTTTGGAAGGGGTTGGCGGAGCAGTTTGGGATTGAGGAGCATGGGTTTTATGAGGAGGAGGAGGGTGAGGGGAGGTTGAGCTTGGTGGAGATGATGAAGGGGAAGGAGGGCGTGTGGGAGGAGATTGTGAAGGAGAATGAGCTGCAGCCTACGAAGCTGGAGGAGGTGGGGGTGTGGTGGTTTGCTGACTATGTGTTGGGCGGGGAGGCTGTTTTGGACAGTATGAATAAGAGCAAGGAGCATGGGTTTTTGGGGTTTAGGAACTCCTACAAGTCTTTCATTTCATGGATTGAGAAGATGAAATCTTACAAGATTGTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

396

Amino Acids

44.59

Weight (kDa)

5.16

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	300
Acc36I	ACCTGC	1 cut(s)	522
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	2 cut(s)	191, 193
AclWI	GGATC	2 cut(s)	133, 391
AcuI	CTGAAG	1 cut(s)	731
AcyI	GRCGYC	2 cut(s)	186, 297
AfaI	GTAC	2 cut(s)	182, 1182
AfiI	CCNNNNNNNGG	3 cut(s)	88, 609, 775
AflIII	ACRYGT	2 cut(s)	388, 546
AgsI	TTSAA	2 cut(s)	434, 569
AjiI	CACGTC	3 cut(s)	321, 424, 529
AjnI	CCWGG	2 cut(s)	129, 170
AluBI	AGCT	8 cut(s)	6, 23, 56, 280, 645, 945, 1006, 1021
AluI	AGCT	8 cut(s)	6, 23, 56, 280, 645, 945, 1006, 1021
AlwI	GGATC	2 cut(s)	133, 391
AoxI	GGCC	6 cut(s)	203, 357, 458, 589, 611, 753
ApeKI	GCWGC	6 cut(s)	32, 680, 723, 781, 1006, 1009
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
AspLEI	GCGC	4 cut(s)	94, 193, 195, 368
AsuC2I	CCSGG	4 cut(s)	162, 202, 260, 720
AsuHPI	GGTGA	3 cut(s)	292, 496, 941
AvaII	GGWCC	6 cut(s)	167, 256, 511, 574, 600, 802
BaeGI	GKGCMC	2 cut(s)	202, 534
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	6 cut(s)	19, 667, 735, 793, 993, 1021
BccI	CCATC	1 cut(s)	745
BceAI	ACGGC	4 cut(s)	180, 199, 379, 445
BciT130I	CCWGG	2 cut(s)	131, 172
BcnI	CCSGG	4 cut(s)	162, 202, 260, 720
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	1007
BfoI	RGCGCY	1 cut(s)	95
BfuAI	ACCTGC	1 cut(s)	522
BisI	GCNGC	8 cut(s)	33, 681, 724, 782, 795, 813, 1007, 1010
BlsI	GCNGC	8 cut(s)	34, 682, 725, 783, 796, 814, 1008, 1011
Bme1390I	CCNGG	6 cut(s)	131, 162, 172, 202, 260, 720
Bme18I	GGWCC	6 cut(s)	167, 256, 511, 574, 600, 802
BmgBI	CACGTC	3 cut(s)	321, 424, 529
BmiI	GGNNCC	4 cut(s)	169, 258, 408, 804
BmrFI	CCNGG	6 cut(s)	131, 162, 172, 202, 260, 720
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	2 cut(s)	39, 1043
BpuMI	CCSGG	4 cut(s)	162, 202, 260, 720
BsaAI	YACGTR	2 cut(s)	316, 389
BsaHI	GRCGYC	2 cut(s)	186, 297
BsaJI	CCNNGG	5 cut(s)	170, 454, 507, 518, 756
BsaXI	ACNNNNNCTCC	6 cut(s)	893, 923, 962, 992, 1094, 1124
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 609, 775
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	131, 172
BseDI	CCNNGG	5 cut(s)	170, 454, 507, 518, 756
BseGI	GGATG	2 cut(s)	237, 850
BseLI	CCNNNNNNNGG	3 cut(s)	88, 609, 775
BseMI	GCAATG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	401
BsePI	GCGCGC	1 cut(s)	191
BseRI	GAGGAG	7 cut(s)	627, 914, 932, 935, 938, 998, 1040
BseSI	GKGCMC	2 cut(s)	202, 534
BseXI	GCAGC	6 cut(s)	19, 667, 735, 793, 993, 1021
Bsh1236I	CGCG	2 cut(s)	191, 193
BshFI	GGCC	6 cut(s)	205, 359, 460, 591, 613, 755
BsiSI	CCGG	5 cut(s)	162, 202, 260, 438, 720
BslFI	GGGAC	2 cut(s)	153, 676
BslI	CCNNNNNNNGG	3 cut(s)	88, 609, 775
BsmFI	GGGAC	2 cut(s)	153, 676
BsmI	GAATGC	1 cut(s)	814
BsnI	GGCC	6 cut(s)	205, 359, 460, 591, 613, 755
Bsp1286I	GDGCHC	2 cut(s)	202, 534
Bsp143I	GATC	4 cut(s)	99, 138, 342, 396
BspANI	GGCC	6 cut(s)	205, 359, 460, 591, 613, 755
BspFNI	CGCG	2 cut(s)	191, 193
BspLI	GGNNCC	4 cut(s)	169, 258, 408, 804
BspMAI	CTGCAG	1 cut(s)	1011
BspMI	ACCTGC	1 cut(s)	522
BspPI	GGATC	2 cut(s)	133, 391
BsrBI	CCGCTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	5 cut(s)	170, 454, 507, 518, 756
BssHII	GCGCGC	1 cut(s)	191
BssMI	GATC	4 cut(s)	99, 138, 342, 396
BssNI	GRCGYC	2 cut(s)	186, 297
BssT1I	CCWWGG	1 cut(s)	454
Bst2UI	CCWGG	2 cut(s)	131, 172
Bst4CI	ACNGT	1 cut(s)	1085
Bst6I	CTCTTC	1 cut(s)	564
BstACI	GRCGYC	2 cut(s)	186, 297
BstBAI	YACGTR	2 cut(s)	316, 389
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	237, 850
BstFNI	CGCG	2 cut(s)	191, 193
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	4 cut(s)	94, 193, 195, 368
BstKTI	GATC	4 cut(s)	102, 141, 345, 399
BstMBI	GATC	4 cut(s)	99, 138, 342, 396
BstNI	CCWGG	2 cut(s)	131, 172
BstSCI	CCNGG	6 cut(s)	129, 160, 170, 200, 258, 718
BstSFI	CTRYAG	1 cut(s)	1007
BstSLI	GKGCMC	2 cut(s)	202, 534
BstUI	CGCG	2 cut(s)	191, 193
BstV1I	GCAGC	6 cut(s)	19, 667, 735, 793, 993, 1021
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	6 cut(s)	205, 359, 460, 591, 613, 755
BtgZI	GCGATG	1 cut(s)	764
BtrI	CACGTC	3 cut(s)	321, 424, 529
BtsCI	GGATG	2 cut(s)	237, 850
BtsIMutI	CAGTG	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	4 cut(s)	94, 193, 195, 368
Cfr10I	RCCGGY	1 cut(s)	437
CseI	GACGC	3 cut(s)	175, 673, 770
Csp6I	GTAC	2 cut(s)	181, 1181
CviAII	CATG	5 cut(s)	491, 905, 1106, 1149, 1185
CviQI	GTAC	2 cut(s)	181, 1181
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	4 cut(s)	101, 140, 344, 398
DpnII	GATC	4 cut(s)	99, 138, 342, 396
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	3 cut(s)	149, 407, 896
Eco130I	CCWWGG	1 cut(s)	454
Eco47I	GGWCC	6 cut(s)	167, 256, 511, 574, 600, 802
Eco57I	CTGAAG	1 cut(s)	731
EcoO109I	RGGNCCY	3 cut(s)	511, 589, 612
EcoRII	CCWGG	2 cut(s)	129, 170
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	5 cut(s)	494, 908, 1109, 1152, 1188
FaqI	GGGAC	2 cut(s)	153, 676
FatI	CATG	5 cut(s)	490, 904, 1105, 1148, 1184
FauI	CCCGC	3 cut(s)	153, 504, 1058
FauNDI	CATATG	1 cut(s)	788
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	8 cut(s)	33, 681, 724, 782, 795, 813, 1007, 1010
FokI	GGATG	2 cut(s)	224, 857
Fsp4HI	GCNGC	8 cut(s)	33, 681, 724, 782, 795, 813, 1007, 1010
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	4 cut(s)	93, 192, 194, 367
GluI	GCNGC	8 cut(s)	33, 681, 724, 782, 795, 813, 1007, 1010
GsuI	CTGGAG	2 cut(s)	39, 1043
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	6 cut(s)	205, 359, 460, 591, 613, 755
HapII	CCGG	5 cut(s)	162, 202, 260, 438, 720
HgaI	GACGC	3 cut(s)	175, 673, 770
HhaI	GCGC	4 cut(s)	94, 193, 195, 368
Hin1I	GRCGYC	2 cut(s)	186, 297
Hin1II	CATG	5 cut(s)	494, 908, 1109, 1152, 1188
Hin6I	GCGC	4 cut(s)	92, 191, 193, 366
HinP1I	GCGC	4 cut(s)	92, 191, 193, 366
HincII	GTYRAC	2 cut(s)	220, 232
HindII	GTYRAC	2 cut(s)	220, 232
HpaII	CCGG	5 cut(s)	162, 202, 260, 438, 720
HphI	GGTGA	3 cut(s)	292, 496, 941
Hpy166II	GTNNAC	7 cut(s)	181, 220, 232, 324, 607, 676, 802
Hpy188I	TCNGA	3 cut(s)	256, 286, 760
Hpy188III	TCNNGA	3 cut(s)	346, 394, 577
Hpy8I	GTNNAC	7 cut(s)	181, 220, 232, 324, 607, 676, 802
Hpy99I	CGWCG	2 cut(s)	191, 299
HpyAV	CCTTC	8 cut(s)	44, 68, 169, 440, 865, 955, 961, 988
HpyCH4III	ACNGT	1 cut(s)	1085
HpyCH4IV	ACGT	7 cut(s)	297, 315, 320, 388, 423, 528, 548
HpyCH4V	TGCA	3 cut(s)	471, 690, 1009
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	7 cut(s)	297, 315, 320, 388, 423, 528, 548
Hsp92I	GRCGYC	2 cut(s)	186, 297
Hsp92II	CATG	5 cut(s)	494, 908, 1109, 1152, 1188
HspAI	GCGC	4 cut(s)	92, 191, 193, 366
Kzo9I	GATC	4 cut(s)	99, 138, 342, 396
LmnI	GCTCC	9 cut(s)	20, 53, 153, 213, 412, 778, 883, 901, 1102
Lsp1109I	GCAGC	6 cut(s)	19, 667, 735, 793, 993, 1021
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	7 cut(s)	297, 315, 320, 388, 423, 528, 548
MaeIII	GTNAC	2 cut(s)	298, 316
MalI	GATC	4 cut(s)	101, 140, 344, 398
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	4 cut(s)	99, 138, 342, 396
MboII	GAAGA	4 cut(s)	275, 301, 581, 1171
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	2 cut(s)	202, 534
MluCI	AATT	4 cut(s)	287, 349, 535, 657
MmeI	TCCRAC	2 cut(s)	27, 531
MseI	TTAA	4 cut(s)	290, 483, 828, 852
MspI	CCGG	5 cut(s)	162, 202, 260, 438, 720
MspR9I	CCNGG	6 cut(s)	131, 162, 172, 202, 260, 720
Mva1269I	GAATGC	1 cut(s)	814
MvaI	CCWGG	2 cut(s)	131, 172
MvnI	CGCG	2 cut(s)	191, 193
NciI	CCSGG	4 cut(s)	162, 202, 260, 720
NdeI	CATATG	1 cut(s)	788
NdeII	GATC	4 cut(s)	99, 138, 342, 396
NlaIII	CATG	5 cut(s)	494, 908, 1109, 1152, 1188
NlaIV	GGNNCC	4 cut(s)	169, 258, 408, 804
NmeAIII	GCCGAG	1 cut(s)	543
NmuCI	GTSAC	2 cut(s)	298, 316
PauI	GCGCGC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PctI	GAATGC	1 cut(s)	814
PflFI	GACNNNGTC	1 cut(s)	598
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	8 cut(s)	34, 682, 725, 783, 796, 814, 1008, 1011
Ppu21I	YACGTR	2 cut(s)	316, 389
PpuMI	RGGWCCY	1 cut(s)	511
Psp5II	RGGWCCY	1 cut(s)	511
Psp6I	CCWGG	2 cut(s)	129, 170
PspGI	CCWGG	2 cut(s)	129, 170
PspN4I	GGNNCC	4 cut(s)	169, 258, 408, 804
PspPPI	RGGWCCY	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	1011
PsuI	RGATCY	1 cut(s)	138
PsyI	GACNNNGTC	1 cut(s)	598
PteI	GCGCGC	1 cut(s)	191
RsaI	GTAC	2 cut(s)	182, 1182
RsaNI	GTAC	2 cut(s)	181, 1181
SaqAI	TTAA	4 cut(s)	290, 483, 828, 852
SatI	GCNGC	8 cut(s)	33, 681, 724, 782, 795, 813, 1007, 1010
Sau3AI	GATC	4 cut(s)	99, 138, 342, 396
ScrFI	CCNGG	6 cut(s)	131, 162, 172, 202, 260, 720
SduI	GDGCHC	2 cut(s)	202, 534
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	1007
SinI	GGWCC	6 cut(s)	167, 256, 511, 574, 600, 802
Sse9I	AATT	4 cut(s)	287, 349, 535, 657
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	6 cut(s)	129, 160, 170, 200, 258, 718
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	1085
TaiI	ACGT	7 cut(s)	300, 318, 323, 391, 426, 531, 551
TaqI	TCGA	2 cut(s)	345, 465
TasI	AATT	4 cut(s)	287, 349, 535, 657
TauI	GCSGC	2 cut(s)	797, 815
Tru1I	TTAA	4 cut(s)	290, 483, 828, 852
Tru9I	TTAA	4 cut(s)	290, 483, 828, 852
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	298, 316
TseI	GCWGC	6 cut(s)	32, 680, 723, 781, 1006, 1009
Tsp45I	GTSAC	2 cut(s)	298, 316
TspDTI	ATGAA	6 cut(s)	665, 974, 1103, 1132, 1137, 1178
TspGWI	ACGGA	1 cut(s)	592
TspRI	CASTG	1 cut(s)	408
Tth111I	GACNNNGTC	1 cut(s)	598
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	6 cut(s)	167, 256, 511, 574, 600, 802
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	1 cut(s)	95
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.