Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Forward (+)

66229478 .. 66230757

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG496900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGCTGGTGGTGGGCTGGAGCTGTTGGCGCTGTTAGGAAATTAACAGAAAATGACACCGAGAGTGTTGCGCTAGTGATCGGTGTGACAGGCATAGTAGGCAACAGCCTAGCTGAGATTCTTCCACTTGCGGACACGCCCGGCGGTCCATGGAAGGTGTACGGTGTTGCACGTCGTCCGCGCCCAAATTGGAATGCTGACCATCCCGTTGACTATATCCAGTGCGATATCTCAGACCCAGAAGACACCAAAACCAAGCTCTCCCGGTTAACCGATGTCACACACATCTTCTACGTGACATGGGCCAGTAAAGCCACTGAGATTGAGAATTGCGAGGCCAACGGTGCTATGCTGCGCAACGTGCTACGTGTCGTTATCCCAGCGGCTCCGAATCTCCGCCACATCAGCCTCCAAACTGGAACCAAACATTATGTTGGGCCGTTCGAATCTCTTGGTAAGATCCAAGCCCATGATCCGCCTTTCACGGAGGAGTTGCCTAGACTTGATGTGCCCAATTTCTACTACACCCTAGAGGACATCCTTTTCGAAGAGGCTAACAAGAAAGAGGCCCTGACTTGGTCGGTGCACCGGCCCAATCATATATTCGGGTTTTCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

206

Amino Acids

23.05

Weight (kDa)

5.62

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	24 - 154	1.8e-06	NAD dependent epimerase/dehydratase family
PRISE	PF22917	81 - 206	8.1e-14	PRISE-like Rossmann-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	356
AccII	CGCG	1 cut(s)	181
AciI	CCGC	6 cut(s)	131, 144, 179, 383, 397, 476
AclWI	GGATC	2 cut(s)	454, 467
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	576
AflIII	ACRYGT	1 cut(s)	367
AjiI	CACGTC	1 cut(s)	173
AjuI	GAANNNNNNNTTGG	2 cut(s)	587, 619
AluBI	AGCT	4 cut(s)	6, 23, 113, 259
AluI	AGCT	4 cut(s)	6, 23, 113, 259
Alw21I	GWGCWC	1 cut(s)	588
Alw44I	GTGCAC	1 cut(s)	584
AlwI	GGATC	2 cut(s)	454, 467
AoxI	GGCC	5 cut(s)	303, 336, 437, 567, 590
ApaLI	GTGCAC	1 cut(s)	584
ApeKI	GCWGC	1 cut(s)	352
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
AspLEI	GCGC	4 cut(s)	32, 73, 183, 357
AspS9I	GGNCC	5 cut(s)	146, 303, 437, 568, 591
AsuC2I	CCSGG	2 cut(s)	141, 265
AsuII	TTCGAA	2 cut(s)	444, 546
AvaII	GGWCC	1 cut(s)	146
BaeGI	GKGCMC	2 cut(s)	513, 588
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	424
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BcnI	CCSGG	2 cut(s)	141, 265
BfaI	CTAG	4 cut(s)	74, 110, 498, 530
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	2 cut(s)	353, 384
BlsI	GCNGC	2 cut(s)	354, 385
Bme1390I	CCNGG	2 cut(s)	141, 265
Bme18I	GGWCC	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	173
BmgT120I	GGNCC	5 cut(s)	146, 303, 437, 568, 591
BmiI	GGNNCC	2 cut(s)	387, 421
BmrFI	CCNGG	2 cut(s)	141, 265
BpiI	GAAGAC	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	39
Bpu14I	TTCGAA	2 cut(s)	444, 546
BpuMI	CCSGG	2 cut(s)	141, 265
BsaAI	YACGTR	2 cut(s)	295, 368
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse118I	RCCGGY	1 cut(s)	588
Bse1I	ACTGG	3 cut(s)	220, 306, 421
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	202, 537
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMII	CTCAG	3 cut(s)	105, 246, 309
BseNI	ACTGG	3 cut(s)	220, 306, 421
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	2 cut(s)	513, 588
BseXI	GCAGC	1 cut(s)	339
BseYI	CCCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	5 cut(s)	305, 338, 439, 569, 592
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	3 cut(s)	141, 265, 589
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	5 cut(s)	305, 338, 439, 569, 592
Bsp119I	TTCGAA	2 cut(s)	444, 546
Bsp1286I	GDGCHC	2 cut(s)	513, 588
Bsp143I	GATC	3 cut(s)	78, 459, 472
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	6 cut(s)	131, 144, 179, 383, 397, 476
BspANI	GGCC	5 cut(s)	305, 338, 439, 569, 592
BspCNI	CTCAG	3 cut(s)	106, 245, 310
BspFNI	CGCG	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	387, 421
BspPI	GGATC	2 cut(s)	454, 467
BspT104I	TTCGAA	2 cut(s)	444, 546
BsrFI	RCCGGY	1 cut(s)	588
BsrI	ACTGG	3 cut(s)	220, 306, 421
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	3 cut(s)	78, 459, 472
BssT1I	CCWWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	164, 344
Bst6I	CTCTTC	1 cut(s)	543
BstBAI	YACGTR	2 cut(s)	295, 368
BstBI	TTCGAA	2 cut(s)	444, 546
BstDEI	CTNAG	3 cut(s)	114, 232, 318
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	202, 537
BstFNI	CGCG	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	4 cut(s)	32, 73, 183, 357
BstKTI	GATC	3 cut(s)	81, 462, 475
BstMBI	GATC	3 cut(s)	78, 459, 472
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 99, 311, 344, 361, 405
BstSCI	CCNGG	2 cut(s)	139, 263
BstSLI	GKGCMC	2 cut(s)	513, 588
BstUI	CGCG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	339
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BsuRI	GGCC	5 cut(s)	305, 338, 439, 569, 592
BtgI	CCRYGG	1 cut(s)	149
BtrI	CACGTC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	202, 537
BtsIMutI	CAGTG	2 cut(s)	227, 315
CfoI	GCGC	4 cut(s)	32, 73, 183, 357
Cfr10I	RCCGGY	1 cut(s)	588
Cfr13I	GGNCC	5 cut(s)	146, 303, 437, 568, 591
Csp6I	GTAC	1 cut(s)	160
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	3 cut(s)	150, 300, 470
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	3 cut(s)	114, 232, 318
DpnI	GATC	3 cut(s)	80, 461, 474
DpnII	GATC	3 cut(s)	78, 459, 472
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	2 cut(s)	386, 465
Eco130I	CCWWGG	1 cut(s)	149
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	3 cut(s)	153, 303, 473
FatI	CATG	3 cut(s)	149, 299, 469
Fnu4HI	GCNGC	2 cut(s)	353, 384
FokI	GGATG	2 cut(s)	189, 524
Fsp4HI	GCNGC	2 cut(s)	353, 384
FspBI	CTAG	4 cut(s)	74, 110, 498, 530
FspI	TGCGCA	1 cut(s)	356
GlaI	GCGC	4 cut(s)	31, 72, 182, 356
GluI	GCNGC	2 cut(s)	353, 384
GsaI	CCCAGC	1 cut(s)	383
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	5 cut(s)	305, 338, 439, 569, 592
HapII	CCGG	3 cut(s)	141, 265, 589
HhaI	GCGC	4 cut(s)	32, 73, 183, 357
Hin1II	CATG	3 cut(s)	153, 303, 473
Hin6I	GCGC	4 cut(s)	30, 71, 181, 355
HinP1I	GCGC	4 cut(s)	30, 71, 181, 355
HincII	GTYRAC	2 cut(s)	211, 270
HindII	GTYRAC	2 cut(s)	211, 270
HinfI	GANTC	3 cut(s)	118, 391, 446
HpaI	GTTAAC	1 cut(s)	270
HpaII	CCGG	3 cut(s)	141, 265, 589
Hpy166II	GTNNAC	4 cut(s)	160, 211, 270, 586
Hpy188I	TCNGA	2 cut(s)	235, 390
Hpy8I	GTNNAC	4 cut(s)	160, 211, 270, 586
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	164, 344
HpyCH4IV	ACGT	4 cut(s)	172, 294, 360, 367
HpyCH4V	TGCA	2 cut(s)	170, 586
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 99, 311, 344, 361, 405
HpyF3I	CTNAG	3 cut(s)	114, 232, 318
HpySE526I	ACGT	4 cut(s)	172, 294, 360, 367
Hsp92II	CATG	3 cut(s)	153, 303, 473
HspAI	GCGC	4 cut(s)	30, 71, 181, 355
KspAI	GTTAAC	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	78, 459, 472
LmnI	GCTCC	2 cut(s)	20, 391
Lsp1109I	GCAGC	1 cut(s)	339
MaeI	CTAG	4 cut(s)	74, 110, 498, 530
MaeII	ACGT	4 cut(s)	172, 294, 360, 367
MaeIII	GTNAC	3 cut(s)	85, 277, 295
MalI	GATC	3 cut(s)	80, 461, 474
MboI	GATC	3 cut(s)	78, 459, 472
MboII	GAAGA	4 cut(s)	113, 254, 280, 560
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	2 cut(s)	513, 588
MluCI	AATT	4 cut(s)	41, 187, 328, 514
MnlI	CCTC	6 cut(s)	328, 419, 481, 526, 544, 559
MseI	TTAA	2 cut(s)	44, 269
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	3 cut(s)	141, 265, 589
MspR9I	CCNGG	2 cut(s)	141, 265
Mva1269I	GAATGC	1 cut(s)	199
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	6 cut(s)	29, 99, 311, 344, 361, 405
NciI	CCSGG	2 cut(s)	141, 265
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	3 cut(s)	78, 459, 472
NlaIII	CATG	3 cut(s)	153, 303, 473
NlaIV	GGNNCC	2 cut(s)	387, 421
NmuCI	GTSAC	3 cut(s)	85, 277, 295
NsbI	TGCGCA	1 cut(s)	356
NspV	TTCGAA	2 cut(s)	444, 546
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	118, 391, 446
PflFI	GACNNNGTC	1 cut(s)	577
PkrI	GCNGC	2 cut(s)	354, 385
Ppu21I	YACGTR	2 cut(s)	295, 368
PspFI	CCCAGC	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	387, 421
PspPI	GGNCC	5 cut(s)	146, 303, 437, 568, 591
PsuI	RGATCY	1 cut(s)	459
PsyI	GACNNNGTC	1 cut(s)	577
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	44, 269
SatI	GCNGC	2 cut(s)	353, 384
Sau3AI	GATC	3 cut(s)	78, 459, 472
Sau96I	GGNCC	5 cut(s)	146, 303, 437, 568, 591
ScrFI	CCNGG	2 cut(s)	141, 265
SduI	GDGCHC	2 cut(s)	513, 588
SetI	ASST	9 cut(s)	8, 25, 115, 159, 175, 261, 297, 363, 370
SfuI	TTCGAA	2 cut(s)	444, 546
SinI	GGWCC	1 cut(s)	146
Sse9I	AATT	4 cut(s)	41, 187, 328, 514
SsiI	CCGC	6 cut(s)	131, 144, 179, 383, 397, 476
SspMI	CTAG	4 cut(s)	74, 110, 498, 530
StyD4I	CCNGG	2 cut(s)	139, 263
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	164, 344
TaiI	ACGT	4 cut(s)	175, 297, 363, 370
TaqI	TCGA	2 cut(s)	444, 546
TasI	AATT	4 cut(s)	41, 187, 328, 514
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	3 cut(s)	118, 391, 446
Tru1I	TTAA	2 cut(s)	44, 269
Tru9I	TTAA	2 cut(s)	44, 269
TscAI	CASTG	2 cut(s)	227, 322
TseFI	GTSAC	3 cut(s)	85, 277, 295
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	3 cut(s)	85, 277, 295
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	2 cut(s)	227, 322
Tth111I	GACNNNGTC	1 cut(s)	577
VneI	GTGCAC	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	146
XspI	CTAG	4 cut(s)	74, 110, 498, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.