pycom15g06850

3-oxo-Delta(4,5)-steroid 5-beta-reductase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
4199260 .. 4200167
908 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g06850.1

Sequence Viewer

Length: 825 bp
ATGAGCTGGTGGTGGGCCGGAGCTGTTGGCGCCGCCAAGAAAAAAGCCGATGAAGACGAACAGCCGCGAGCTCCCGAGAGCGTGGGACTCGTGATCGGCGTCACCGGCATAGTCGGCAATAGCCTCGCCGAAATCCTTCCTCTCTCCGACACACCCGGCGGCCCATGGAAGGTCTATGGCGTTGCGCGCCGTCCCCGCCCGAACTGGAGCGCCGACCACCCTATCGAGTACATCCAGTGCGACGTGTCTGATCCCGACGATGCTAAAACCAAGCTCTCTCCGTTAACGGACGTCACCCACGTTTTCTACGTCACGTGGTCCAGCCGATCCACCGAGGTGGAGAACTGCGAGGTTAACGGTAATATGCTGCGCAACGTTTTGGAATCCGTCATCCCGAACGCGCCCAATCTCCGCCACATCTGCCTCCAGACCGGTGGCAAACACTATCTCGGACCGTTCGAGTCGTTTGGCAAGATCCAGCCGCACGATCCGCCGTTTACGGAGGACCTGCCTCGACTGGATACCCCGAATTTCTATTACACACAGGAGGACCTTTTGTTTGCTGCGGTGGAGAAGAAAGAGGATCTGACTTGGTCGGTGCACCGGCCCGATATGATTTTCGGGTTTTCCCCTTACAGCTTGATGAATATTGTCGGCACGCTCTGCGTCTACGCCGCGATATGCAAGCACGAGGGGCTGCCGCTGAGGTTTCCGGGAAGCAAAGCTGCGTGGAATTCATACTCGGTGGCTGCGGATGCTCGATCTGATAGCGGAGCACCACATATGGGCGGCGGTGGACCCGTATGCGAAAAACGAAGCGTTTAA

Protein Analysis

275

Amino Acids

30.1

Weight (kDa)

5.48

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRISE PF22917 87 - 251 1.7e-21 PRISE-like Rossmann-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24220 AT4G24220
fragaria_vesca FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
Acc16I TGCGCA 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 29
AccI GTMKAC 1 cut(s) 669
AccII CGCG 4 cut(s) 67, 187, 401, 677
AclI AACGTT 1 cut(s) 375
AclWI GGATC 5 cut(s) 245, 321, 469, 482, 591
AcsI RAATTY 2 cut(s) 529, 733
AcvI CACGTG 1 cut(s) 315
AcyI GRCGYC 3 cut(s) 30, 99, 291
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 169, 785
AflIII ACRYGT 1 cut(s) 243
AgeI ACCGGT 1 cut(s) 431
AjiI CACGTC 1 cut(s) 244
AleI CACNNNNGTG 1 cut(s) 335
AluBI AGCT 6 cut(s) 6, 23, 71, 274, 639, 725
AluI AGCT 6 cut(s) 6, 23, 71, 274, 639, 725
Alw21I GWGCWC 3 cut(s) 73, 603, 778
Alw44I GTGCAC 1 cut(s) 599
AlwI GGATC 5 cut(s) 245, 321, 469, 482, 591
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 3 cut(s) 15, 160, 605
ApaLI GTGCAC 1 cut(s) 599
ApeKI GCWGC 5 cut(s) 367, 563, 697, 725, 749
ApoI RAATTY 2 cut(s) 529, 733
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
AsiGI ACCGGT 1 cut(s) 431
Asp700I GAANNNNTTC 1 cut(s) 135
AspLEI GCGC 6 cut(s) 32, 187, 189, 212, 372, 403
AspS9I GGNCC 8 cut(s) 15, 161, 318, 452, 505, 550, 606, 797
AsuC2I CCSGG 2 cut(s) 156, 714
AsuHPI GGTGA 2 cut(s) 94, 286
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 5 cut(s) 318, 452, 505, 550, 797
BaeGI GKGCMC 1 cut(s) 603
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 73
BauI CACGAG 2 cut(s) 89, 689
BbrPI CACGTG 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 3 cut(s) 73, 603, 778
BbvCI CCTCAGC 1 cut(s) 704
BbvI GCAGC 5 cut(s) 354, 550, 684, 712, 736
BceAI ACGGC 2 cut(s) 174, 478
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciVI GTATCC 1 cut(s) 514
BcnI CCSGG 2 cut(s) 156, 714
BfoI RGCGCY 2 cut(s) 33, 213
BfuAI ACCTGC 1 cut(s) 516
BfuI GTATCC 1 cut(s) 514
Bme1390I CCNGG 2 cut(s) 156, 714
Bme18I GGWCC 5 cut(s) 318, 452, 505, 550, 797
BmeT110I CYCGRG 1 cut(s) 74
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 8 cut(s) 15, 161, 318, 452, 505, 550, 606, 797
BmiI GGNNCC 2 cut(s) 31, 799
BmrFI CCNGG 2 cut(s) 156, 714
BmsI GCATC 2 cut(s) 250, 745
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 2 cut(s) 226, 410
Bpu10I CCTNAGC 1 cut(s) 704
BpuMI CCSGG 2 cut(s) 156, 714
BsaAI YACGTR 1 cut(s) 315
BsaHI GRCGYC 3 cut(s) 30, 99, 291
BsaJI CCNNGG 2 cut(s) 164, 333
BsaWI WCCGGW 1 cut(s) 431
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 785
Bse118I RCCGGY 3 cut(s) 104, 431, 603
Bse1I ACTGG 3 cut(s) 209, 235, 522
BseDI CCNNGG 2 cut(s) 164, 333
BseGI GGATG 3 cut(s) 231, 390, 760
BseLI CCNNNNNNNGG 2 cut(s) 169, 785
BseMII CTCAG 1 cut(s) 695
BseNI ACTGG 3 cut(s) 209, 235, 522
BsePI GCGCGC 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 603
BseXI GCAGC 5 cut(s) 354, 550, 684, 712, 736
Bsh1236I CGCG 4 cut(s) 67, 187, 401, 677
BshFI GGCC 3 cut(s) 17, 162, 607
BshNI GGYRCC 1 cut(s) 29
BshTI ACCGGT 1 cut(s) 431
BsiHKAI GWGCWC 3 cut(s) 73, 603, 778
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 6 cut(s) 18, 105, 156, 432, 604, 713
BslFI GGGAC 2 cut(s) 99, 177
BslI CCNNNNNNNGG 2 cut(s) 169, 785
BsmFI GGGAC 2 cut(s) 99, 177
BsnI GGCC 3 cut(s) 17, 162, 607
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 3 cut(s) 73, 603, 778
Bsp143I GATC 7 cut(s) 93, 250, 326, 474, 487, 583, 761
Bsp19I CCATGG 1 cut(s) 164
BspANI GGCC 3 cut(s) 17, 162, 607
BspCNI CTCAG 1 cut(s) 696
BspFNI CGCG 4 cut(s) 67, 187, 401, 677
BspLI GGNNCC 2 cut(s) 31, 799
BspMI ACCTGC 1 cut(s) 516
BspPI GGATC 5 cut(s) 245, 321, 469, 482, 591
BspT107I GGYRCC 1 cut(s) 29
BsrFI RCCGGY 3 cut(s) 104, 431, 603
BsrI ACTGG 3 cut(s) 209, 235, 522
BssAI RCCGGY 3 cut(s) 104, 431, 603
BssECI CCNNGG 2 cut(s) 164, 333
BssHII GCGCGC 1 cut(s) 185
BssMI GATC 7 cut(s) 93, 250, 326, 474, 487, 583, 761
BssNI GRCGYC 3 cut(s) 30, 99, 291
BssSI CACGAG 2 cut(s) 89, 689
BssT1I CCWWGG 1 cut(s) 164
Bst2BI CACGAG 2 cut(s) 89, 689
Bst4CI ACNGT 2 cut(s) 359, 456
BstACI GRCGYC 3 cut(s) 30, 99, 291
BstAPI GCANNNNNTGC 1 cut(s) 663
BstBAI YACGTR 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 69, 187, 659, 686
BstDEI CTNAG 1 cut(s) 704
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 3 cut(s) 231, 390, 760
BstFNI CGCG 4 cut(s) 67, 187, 401, 677
BstH2I RGCGCY 2 cut(s) 33, 213
BstHHI GCGC 6 cut(s) 32, 187, 189, 212, 372, 403
BstKTI GATC 7 cut(s) 96, 253, 329, 477, 490, 586, 764
BstMBI GATC 7 cut(s) 93, 250, 326, 474, 487, 583, 761
BstSCI CCNGG 2 cut(s) 154, 712
BstSLI GKGCMC 1 cut(s) 603
BstUI CGCG 4 cut(s) 67, 187, 401, 677
BstV1I GCAGC 5 cut(s) 354, 550, 684, 712, 736
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 474, 583
BstXI CCANNNNNNTGG 2 cut(s) 337, 434
BstYI RGATCY 2 cut(s) 474, 583
BsuI GTATCC 1 cut(s) 514
BsuRI GGCC 3 cut(s) 17, 162, 607
BtgI CCRYGG 1 cut(s) 164
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 3 cut(s) 231, 390, 760
BtsIMutI CAGTG 1 cut(s) 242
BveI ACCTGC 1 cut(s) 516
Cac8I GCNNGC 4 cut(s) 69, 187, 659, 686
CfoI GCGC 6 cut(s) 32, 187, 189, 212, 372, 403
Cfr10I RCCGGY 3 cut(s) 104, 431, 603
Cfr13I GGNCC 8 cut(s) 15, 161, 318, 452, 505, 550, 606, 797
CpoI CGGWCCG 1 cut(s) 452
CseI GACGC 2 cut(s) 88, 655
Csp6I GTAC 1 cut(s) 229
CspAI ACCGGT 1 cut(s) 431
CspI CGGWCCG 1 cut(s) 452
CviAII CATG 1 cut(s) 165
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 704
DinI GGCGCC 1 cut(s) 31
DpnI GATC 7 cut(s) 95, 252, 328, 476, 489, 585, 763
DpnII GATC 7 cut(s) 93, 250, 326, 474, 487, 583, 761
EciI GGCGGA 2 cut(s) 401, 480
Ecl136II GAGCTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 73
Eco47I GGWCC 5 cut(s) 318, 452, 505, 550, 797
Eco53kI GAGCTC 1 cut(s) 71
Eco72I CACGTG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 71
EcoO109I RGGNCCY 2 cut(s) 505, 550
EcoRI GAATTC 1 cut(s) 733
EcoT14I CCWWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 73
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 1 cut(s) 168
FaqI GGGAC 2 cut(s) 99, 177
FatI CATG 1 cut(s) 164
FauI CCCGC 1 cut(s) 203
FauNDI CATATG 1 cut(s) 783
FblI GTMKAC 1 cut(s) 669
FokI GGATG 3 cut(s) 218, 377, 767
FriOI GRGCYC 1 cut(s) 73
FspI TGCGCA 1 cut(s) 371
GlaI GCGC 6 cut(s) 31, 186, 188, 211, 371, 402
GsuI CTGGAG 2 cut(s) 226, 410
HaeII RGCGCY 2 cut(s) 33, 213
HaeIII GGCC 3 cut(s) 17, 162, 607
HapII CCGG 6 cut(s) 18, 105, 156, 432, 604, 713
HgaI GACGC 2 cut(s) 88, 655
HhaI GCGC 6 cut(s) 32, 187, 189, 212, 372, 403
Hin1I GRCGYC 3 cut(s) 30, 99, 291
Hin1II CATG 1 cut(s) 168
Hin6I GCGC 6 cut(s) 30, 185, 187, 210, 370, 401
HinP1I GCGC 6 cut(s) 30, 185, 187, 210, 370, 401
HincII GTYRAC 2 cut(s) 285, 355
HindII GTYRAC 2 cut(s) 285, 355
HinfI GANTC 3 cut(s) 87, 383, 461
HpaI GTTAAC 2 cut(s) 285, 355
HpaII CCGG 6 cut(s) 18, 105, 156, 432, 604, 713
HphI GGTGA 2 cut(s) 94, 286
Hpy166II GTNNAC 6 cut(s) 285, 355, 498, 601, 670, 797
Hpy188I TCNGA 5 cut(s) 148, 250, 452, 588, 766
Hpy188III TCNNGA 5 cut(s) 74, 91, 254, 394, 427
Hpy8I GTNNAC 6 cut(s) 285, 355, 498, 601, 670, 797
Hpy99I CGWCG 2 cut(s) 245, 260
HpyAV CCTTC 2 cut(s) 146, 163
HpyCH4III ACNGT 2 cut(s) 359, 456
HpyCH4IV ACGT 6 cut(s) 243, 291, 300, 309, 314, 375
HpyCH4V TGCA 2 cut(s) 601, 684
HpyF3I CTNAG 1 cut(s) 704
HpySE526I ACGT 6 cut(s) 243, 291, 300, 309, 314, 375
Hsp92I GRCGYC 3 cut(s) 30, 99, 291
Hsp92II CATG 1 cut(s) 168
HspAI GCGC 6 cut(s) 30, 185, 187, 210, 370, 401
KasI GGCGCC 1 cut(s) 29
KspAI GTTAAC 2 cut(s) 285, 355
Kzo9I GATC 7 cut(s) 93, 250, 326, 474, 487, 583, 761
LmnI GCTCC 4 cut(s) 20, 76, 207, 773
Lsp1109I GCAGC 5 cut(s) 354, 550, 684, 712, 736
LweI GCATC 2 cut(s) 250, 745
MaeII ACGT 6 cut(s) 243, 291, 300, 309, 314, 375
MaeIII GTNAC 3 cut(s) 100, 292, 310
MalI GATC 7 cut(s) 95, 252, 328, 476, 489, 585, 763
MboI GATC 7 cut(s) 93, 250, 326, 474, 487, 583, 761
MboII GAAGA 2 cut(s) 65, 586
MflI RGATCY 2 cut(s) 474, 583
MhlI GDGCHC 3 cut(s) 73, 603, 778
MluCI AATT 2 cut(s) 529, 733
Mly113I GGCGCC 1 cut(s) 30
MlyI GAGTC 2 cut(s) 81, 470
MmeI TCCRAC 1 cut(s) 171
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 3 cut(s) 284, 354, 823
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 703
MspI CCGG 6 cut(s) 18, 105, 156, 432, 604, 713
MspR9I CCNGG 2 cut(s) 156, 714
MvnI CGCG 4 cut(s) 67, 187, 401, 677
NarI GGCGCC 1 cut(s) 30
NciI CCSGG 2 cut(s) 156, 714
NcoI CCATGG 1 cut(s) 164
NdeI CATATG 1 cut(s) 783
NdeII GATC 7 cut(s) 93, 250, 326, 474, 487, 583, 761
NlaIII CATG 1 cut(s) 168
NlaIV GGNNCC 2 cut(s) 31, 799
NmuCI GTSAC 3 cut(s) 100, 292, 310
NsbI TGCGCA 1 cut(s) 371
OliI CACNNNNGTG 1 cut(s) 335
PauI GCGCGC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 297, 306, 456
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 383
PflFI GACNNNGTC 1 cut(s) 592
PfoI TCCNGGA 1 cut(s) 712
PinAI ACCGGT 1 cut(s) 431
PleI GAGTC 2 cut(s) 81, 469
PluTI GGCGCC 1 cut(s) 33
PmaCI CACGTG 1 cut(s) 315
PmlI CACGTG 1 cut(s) 315
PpsI GAGTC 2 cut(s) 81, 469
Ppu21I YACGTR 1 cut(s) 315
PpuMI RGGWCCY 2 cut(s) 505, 550
Psp124BI GAGCTC 1 cut(s) 73
Psp1406I AACGTT 1 cut(s) 375
Psp5II RGGWCCY 2 cut(s) 505, 550
PspCI CACGTG 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 31, 799
PspPI GGNCC 8 cut(s) 15, 161, 318, 452, 505, 550, 606, 797
PspPPI RGGWCCY 2 cut(s) 505, 550
PsuI RGATCY 2 cut(s) 474, 583
PsyI GACNNNGTC 1 cut(s) 592
PteI GCGCGC 1 cut(s) 185
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 335
Rsr2I CGGWCCG 1 cut(s) 452
RsrII CGGWCCG 1 cut(s) 452
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 284, 354, 823
Sau3AI GATC 7 cut(s) 93, 250, 326, 474, 487, 583, 761
Sau96I GGNCC 8 cut(s) 15, 161, 318, 452, 505, 550, 606, 797
SchI GAGTC 2 cut(s) 81, 470
ScrFI CCNGG 2 cut(s) 156, 714
SduI GDGCHC 3 cut(s) 73, 603, 778
SfaNI GCATC 2 cut(s) 250, 745
SfoI GGCGCC 1 cut(s) 31
SinI GGWCC 5 cut(s) 318, 452, 505, 550, 797
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 2 cut(s) 529, 733
SspDI GGCGCC 1 cut(s) 29
SspI AATATT 1 cut(s) 649
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 2 cut(s) 154, 712
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 359, 456
TaiI ACGT 6 cut(s) 246, 294, 303, 312, 317, 378
TaqI TCGA 4 cut(s) 225, 459, 514, 760
TasI AATT 2 cut(s) 529, 733
TatI WGTACW 1 cut(s) 228
TauI GCSGC 7 cut(s) 35, 67, 162, 484, 677, 703, 792
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 3 cut(s) 284, 354, 823
Tru9I TTAA 3 cut(s) 284, 354, 823
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 3 cut(s) 100, 292, 310
TseI GCWGC 5 cut(s) 367, 563, 697, 725, 749
Tsp45I GTSAC 3 cut(s) 100, 292, 310
TspDTI ATGAA 3 cut(s) 66, 659, 726
TspGWI ACGGA 4 cut(s) 270, 302, 376, 515
TspRI CASTG 1 cut(s) 242
Tth111I GACNNNGTC 1 cut(s) 592
VneI GTGCAC 1 cut(s) 599
VpaK11BI GGWCC 5 cut(s) 318, 452, 505, 550, 797
XapI RAATTY 2 cut(s) 529, 733
XmiI GTMKAC 1 cut(s) 669
XmnI GAANNNNTTC 1 cut(s) 135
ZraI GACGTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.