Rorug06G0370100

ARM-repeat Tetratricopeptide repeat (TPR)-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000626
Physical Location & Seq
Forward (+)
51662672 .. 51664392
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0370100.1

Sequence Viewer

Length: 1164 bp
ATGAAGAAAAGTAAAAGACCCGAGTCCTGTTCGAATGTGAAGATGAAGTCGGATAGGATTAGCAACTTACCAAGTGATGTTATAGATAAAATACTATCACATTTGCCACTCAGGGACGTAGCGAGGACATGTGTTTTGTCAAGCAAGTGGAGGTACAAATTGGTTATGCTTCCGCATCTTGTGTTTGATCCTGAGTGCAGCTCGAGCATTGTTGATCATGTTCTCTTAAGTCACATTGGCCCCGTCACCAAATTTAAGCTTAGCCAAGGATGTAAAGGCCTCAGAGATATTGATCGGTGGATTCTTCACCTGTCGAGATACTCCCTCAAAGAGTTCGTGGTTGATCTCTGGATGTGGGAACGACAGCCAGTGCAACGCTACAAGATGCCTTCATGCATGTTTTCATGTCAAGATATCATTCATTTAAAGTTGCGTAATTTTATGCTAAAACCCCCGTCTACATTCAAAGGGTTCAGGAGTTTGAAGAGTCTTGACATTGAGCATGTGACCCTGGCCCAAGATGTGTTGGAAAAGATGTTTCTTTGTTGTCCTCTGCTTACGAGATTCACTTTGAGAGACTGTGACGGTTTCAGCCGGCTCAAGATTGATGCACCGAATCTCCAATTCCTTGTCGTTTGTGGTTCGTATGAGGATTTTAACGTTGTGAATACGTTAAATCTTGCTGATGTTTCTATGTTTTTTTACAACACACGGGTCCCTTGCAGTTCCAGCAAATTGATCAAGTTTTTTGATGACCTGCCTTGTATTCAAAGGCTCCAAATTAACCGGCGTTTTTTGAAATACGTGGCTGCTGGTGCCTTGCTAGAAAAGCTGCCCAAACCGTGTCTGCAACTGAAATTTCTTAAAATGAACATATGCACAGATGATCGGGAGGATGTTTTAACTGCTCTTTGCCTTCTGAGAAGCTCCCCTGCTCTAGAGGAATTAGAAATTCTCACAAATGATTTCTCACATAATACAGCTAATGTAGGTACAGCGAACTCCTGCTTGGATCACAACAGGAGTTACTCATTCACCCAACTGCGACATGTGAAAATATGCAACATCTCTGGTCTTGAAGATGAGTCTTTGGAGCTAGTAAAGAAGTTGCTTCGTTTGAGGCGAGCTTCAGGGAATGTGGAGATAATCTATTTAGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

44.66

Weight (kDa)

9.06

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 52 1.2e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 94 - 355 4.9e-14 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 97 - 318 1.4e-17 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24220 AT4G24220
fragaria_vesca FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 765
AccB1I GGYRCC 1 cut(s) 815
AccI GTMKAC 1 cut(s) 458
AciI CCGC 1 cut(s) 173
AclI AACGTT 1 cut(s) 660
AclWI GGATC 2 cut(s) 182, 1020
AcsI RAATTY 3 cut(s) 251, 857, 951
AcuI CTGAAG 1 cut(s) 1113
AfaI GTAC 2 cut(s) 155, 994
AflII CTTAAG 1 cut(s) 226
AflIII ACRYGT 2 cut(s) 128, 1048
AgsI TTSAA 5 cut(s) 466, 484, 770, 799, 1079
AjnI CCWGG 1 cut(s) 510
AjuI GAANNNNNNNTTGG 2 cut(s) 992, 1024
AluBI AGCT 7 cut(s) 201, 259, 832, 927, 983, 1096, 1127
AluI AGCT 7 cut(s) 201, 259, 832, 927, 983, 1096, 1127
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 2 cut(s) 182, 1020
Ama87I CYCGRG 2 cut(s) 20, 202
AoxI GGCC 3 cut(s) 238, 277, 513
ApeKI GCWGC 3 cut(s) 198, 809, 832
ApoI RAATTY 3 cut(s) 251, 857, 951
ArsI GACNNNNNNTTYG 2 cut(s) 118, 150
AspS9I GGNCC 3 cut(s) 239, 514, 715
AsuHPI GGTGA 3 cut(s) 238, 299, 1027
AsuII TTCGAA 1 cut(s) 32
AvaI CYCGRG 2 cut(s) 20, 202
AvaII GGWCC 1 cut(s) 715
BanI GGYRCC 1 cut(s) 815
BbvI GCAGC 3 cut(s) 210, 796, 819
BciT130I CCWGG 1 cut(s) 512
BclI TGATCA 2 cut(s) 214, 738
BcoDI GTCTC 1 cut(s) 570
BfaI CTAG 3 cut(s) 824, 938, 1097
BfrI CTTAAG 1 cut(s) 226
BfuAI ACCTGC 1 cut(s) 765
BisI GCNGC 3 cut(s) 199, 810, 833
BlpI GCTNAGC 1 cut(s) 260
BlsI GCNGC 3 cut(s) 200, 811, 834
Bme1390I CCNGG 1 cut(s) 512
Bme18I GGWCC 1 cut(s) 715
BmeT110I CYCGRG 2 cut(s) 20, 202
BmgT120I GGNCC 3 cut(s) 239, 514, 715
BmiI GGNNCC 5 cut(s) 241, 716, 717, 776, 817
BmrFI CCNGG 1 cut(s) 512
BmsI GCATC 3 cut(s) 184, 375, 598
BoxI GACNNNNGTC 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 185, 217
Bpu1102I GCTNAGC 1 cut(s) 260
Bpu14I TTCGAA 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 584
BsaAI YACGTR 1 cut(s) 805
BsaBI GATNNNNATC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 265, 510
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bse118I RCCGGY 2 cut(s) 594, 786
Bse1I ACTGG 1 cut(s) 368
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 2 cut(s) 265, 510
BseGI GGATG 3 cut(s) 275, 357, 901
BseJI GATNNNNATC 1 cut(s) 291
BseMII CTCAG 4 cut(s) 124, 183, 295, 911
BseNI ACTGG 1 cut(s) 368
BseXI GCAGC 3 cut(s) 210, 796, 819
BsgI GTGCAG 1 cut(s) 217
BshFI GGCC 3 cut(s) 240, 279, 515
BshNI GGYRCC 1 cut(s) 815
BsiHKCI CYCGRG 2 cut(s) 20, 202
BsiSI CCGG 2 cut(s) 595, 787
BslFI GGGAC 2 cut(s) 128, 701
BsmAI GTCTC 1 cut(s) 570
BsmFI GGGAC 2 cut(s) 128, 701
BsnI GGCC 3 cut(s) 240, 279, 515
BsoBI CYCGRG 2 cut(s) 20, 202
Bsp119I TTCGAA 1 cut(s) 32
Bsp143I GATC 7 cut(s) 187, 214, 292, 343, 738, 886, 1012
Bsp1720I GCTNAGC 1 cut(s) 260
BspACI CCGC 1 cut(s) 173
BspANI GGCC 3 cut(s) 240, 279, 515
BspCNI CTCAG 4 cut(s) 123, 184, 294, 912
BspLI GGNNCC 5 cut(s) 241, 716, 717, 776, 817
BspMI ACCTGC 1 cut(s) 765
BspPI GGATC 2 cut(s) 182, 1020
BspT104I TTCGAA 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 815
BspTI CTTAAG 1 cut(s) 226
BsrFI RCCGGY 2 cut(s) 594, 786
BsrI ACTGG 1 cut(s) 368
BssAI RCCGGY 2 cut(s) 594, 786
BssECI CCNNGG 2 cut(s) 265, 510
BssMI GATC 7 cut(s) 187, 214, 292, 343, 738, 886, 1012
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 3 cut(s) 581, 587, 843
Bst6I CTCTTC 1 cut(s) 479
BstAFI CTTAAG 1 cut(s) 226
BstBAI YACGTR 1 cut(s) 805
BstBI TTCGAA 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 596, 1125
BstDEI CTNAG 5 cut(s) 110, 192, 260, 281, 920
BstF5I GGATG 3 cut(s) 275, 357, 901
BstKTI GATC 7 cut(s) 190, 217, 295, 346, 741, 889, 1015
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 7 cut(s) 187, 214, 292, 343, 738, 886, 1012
BstMWI GCNNNNNNNGC 4 cut(s) 204, 729, 815, 829
BstNI CCWGG 1 cut(s) 512
BstNSI RCATGY 4 cut(s) 132, 400, 506, 1052
BstPAI GACNNNNGTC 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 210, 796, 819
BsuRI GGCC 3 cut(s) 240, 279, 515
BtsCI GGATG 3 cut(s) 275, 357, 901
BtsIMutI CAGTG 1 cut(s) 375
BveI ACCTGC 1 cut(s) 765
Cac8I GCNNGC 2 cut(s) 596, 1125
Cfr10I RCCGGY 2 cut(s) 594, 786
Cfr13I GGNCC 3 cut(s) 239, 514, 715
Csp6I GTAC 2 cut(s) 154, 993
CviAII CATG 7 cut(s) 129, 218, 393, 397, 405, 503, 1049
CviQI GTAC 2 cut(s) 154, 993
DdeI CTNAG 5 cut(s) 110, 192, 260, 281, 920
DpnI GATC 7 cut(s) 189, 216, 294, 345, 740, 888, 1014
DpnII GATC 7 cut(s) 187, 214, 292, 343, 738, 886, 1012
DraI TTTAAA 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 479
EarI CTCTTC 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 265
Eco147I AGGCCT 1 cut(s) 279
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 715
Eco57I CTGAAG 1 cut(s) 1113
Eco88I CYCGRG 2 cut(s) 20, 202
EcoO109I RGGNCCY 1 cut(s) 715
EcoRII CCWGG 1 cut(s) 510
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 7 cut(s) 132, 221, 396, 400, 408, 506, 1052
FaqI GGGAC 2 cut(s) 128, 701
FatI CATG 7 cut(s) 128, 217, 392, 396, 404, 502, 1048
FauNDI CATATG 1 cut(s) 875
FbaI TGATCA 2 cut(s) 214, 738
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 3 cut(s) 199, 810, 833
FokI GGATG 3 cut(s) 282, 364, 908
Fsp4HI GCNGC 3 cut(s) 199, 810, 833
FspBI CTAG 3 cut(s) 824, 938, 1097
GluI GCNGC 3 cut(s) 199, 810, 833
HaeIII GGCC 3 cut(s) 240, 279, 515
HapII CCGG 2 cut(s) 595, 787
Hin1II CATG 7 cut(s) 132, 221, 396, 400, 408, 506, 1052
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 6 cut(s) 23, 301, 487, 564, 616, 1085
HpaII CCGG 2 cut(s) 595, 787
HphI GGTGA 3 cut(s) 238, 299, 1027
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 3 cut(s) 52, 284, 921
Hpy8I GTNNAC 1 cut(s) 459
HpyAV CCTTC 2 cut(s) 399, 926
HpyCH4III ACNGT 3 cut(s) 581, 587, 843
HpyCH4IV ACGT 4 cut(s) 117, 660, 671, 804
HpyCH4V TGCA 8 cut(s) 198, 373, 396, 611, 723, 850, 879, 1062
HpyF10VI GCNNNNNNNGC 4 cut(s) 204, 729, 815, 829
HpyF3I CTNAG 5 cut(s) 110, 192, 260, 281, 920
HpySE526I ACGT 4 cut(s) 117, 660, 671, 804
Hsp92II CATG 7 cut(s) 132, 221, 396, 400, 408, 506, 1052
KflI GGGWCCC 1 cut(s) 715
KroI GCCGGC 1 cut(s) 594
KroNI GCCGGC 1 cut(s) 596
Ksp22I TGATCA 2 cut(s) 214, 738
Kzo9I GATC 7 cut(s) 187, 214, 292, 343, 738, 886, 1012
LmnI GCTCC 3 cut(s) 780, 932, 1093
Lsp1109I GCAGC 3 cut(s) 210, 796, 819
LweI GCATC 3 cut(s) 184, 375, 598
MaeI CTAG 3 cut(s) 824, 938, 1097
MaeII ACGT 4 cut(s) 117, 660, 671, 804
MaeIII GTNAC 5 cut(s) 230, 244, 505, 581, 1025
MalI GATC 7 cut(s) 189, 216, 294, 345, 740, 888, 1014
MboI GATC 7 cut(s) 187, 214, 292, 343, 738, 886, 1012
MboII GAAGA 5 cut(s) 16, 52, 296, 496, 1091
MluCI AATT 9 cut(s) 158, 251, 436, 623, 734, 780, 857, 944, 951
MlyI GAGTC 3 cut(s) 32, 496, 1094
MmeI TCCRAC 2 cut(s) 30, 507
MnlI CCTC 9 cut(s) 117, 144, 290, 335, 561, 643, 886, 934, 1113
Mph1103I ATGCAT 1 cut(s) 398
MroNI GCCGGC 1 cut(s) 594
MseI TTAA 8 cut(s) 227, 255, 425, 657, 674, 783, 864, 902
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 2 cut(s) 595, 787
MspR9I CCNGG 1 cut(s) 512
MvaI CCWGG 1 cut(s) 512
MwoI GCNNNNNNNGC 4 cut(s) 204, 729, 815, 829
NaeI GCCGGC 1 cut(s) 596
NdeI CATATG 1 cut(s) 875
NdeII GATC 7 cut(s) 187, 214, 292, 343, 738, 886, 1012
NgoMIV GCCGGC 1 cut(s) 594
NlaIII CATG 7 cut(s) 132, 221, 396, 400, 408, 506, 1052
NlaIV GGNNCC 5 cut(s) 241, 716, 717, 776, 817
NmuCI GTSAC 4 cut(s) 230, 244, 505, 581
NsiI ATGCAT 1 cut(s) 398
NspI RCATGY 4 cut(s) 132, 400, 506, 1052
NspV TTCGAA 1 cut(s) 32
PaeR7I CTCGAG 1 cut(s) 202
PceI AGGCCT 1 cut(s) 279
PciI ACATGT 2 cut(s) 128, 1048
PcsI WCGNNNNNNNCGW 1 cut(s) 1120
PdiI GCCGGC 1 cut(s) 596
PfeI GAWTC 3 cut(s) 301, 564, 616
PkrI GCNGC 3 cut(s) 200, 811, 834
PleI GAGTC 3 cut(s) 31, 495, 1093
PpsI GAGTC 3 cut(s) 31, 495, 1093
Ppu21I YACGTR 1 cut(s) 805
PpuMI RGGWCCY 1 cut(s) 715
PscI ACATGT 2 cut(s) 128, 1048
PshAI GACNNNNGTC 1 cut(s) 22
Psp1406I AACGTT 1 cut(s) 660
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 5 cut(s) 241, 716, 717, 776, 817
PspPI GGNCC 3 cut(s) 239, 514, 715
PspPPI RGGWCCY 1 cut(s) 715
PspXI VCTCGAGB 1 cut(s) 202
RsaI GTAC 2 cut(s) 155, 994
RsaNI GTAC 2 cut(s) 154, 993
SaqAI TTAA 8 cut(s) 227, 255, 425, 657, 674, 783, 864, 902
SatI GCNGC 3 cut(s) 199, 810, 833
Sau3AI GATC 7 cut(s) 187, 214, 292, 343, 738, 886, 1012
Sau96I GGNCC 3 cut(s) 239, 514, 715
SchI GAGTC 3 cut(s) 32, 496, 1094
ScrFI CCNGG 1 cut(s) 512
SfaNI GCATC 3 cut(s) 184, 375, 598
Sfr274I CTCGAG 1 cut(s) 202
SfuI TTCGAA 1 cut(s) 32
SinI GGWCC 1 cut(s) 715
SlaI CTCGAG 1 cut(s) 202
SmlI CTYRAG 3 cut(s) 202, 226, 599
SmoI CTYRAG 3 cut(s) 202, 226, 599
Sse9I AATT 9 cut(s) 158, 251, 436, 623, 734, 780, 857, 944, 951
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 1 cut(s) 173
SspMI CTAG 3 cut(s) 824, 938, 1097
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 510
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 3 cut(s) 581, 587, 843
TaiI ACGT 4 cut(s) 120, 663, 674, 807
TaqI TCGA 3 cut(s) 32, 203, 314
TasI AATT 9 cut(s) 158, 251, 436, 623, 734, 780, 857, 944, 951
TfiI GAWTC 3 cut(s) 301, 564, 616
Tru1I TTAA 8 cut(s) 227, 255, 425, 657, 674, 783, 864, 902
Tru9I TTAA 8 cut(s) 227, 255, 425, 657, 674, 783, 864, 902
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 4 cut(s) 230, 244, 505, 581
TseI GCWGC 3 cut(s) 198, 809, 832
Tsp45I GTSAC 4 cut(s) 230, 244, 505, 581
TspDTI ATGAA 6 cut(s) 17, 59, 381, 393, 410, 884
TspRI CASTG 1 cut(s) 375
Vha464I CTTAAG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 3 cut(s) 251, 857, 951
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 4 cut(s) 132, 400, 506, 1052
XhoI CTCGAG 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 458
XspI CTAG 3 cut(s) 824, 938, 1097
Zsp2I ATGCAT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.