Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Forward (+)

4195977 .. 4196786

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g06840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCTGCGCAACGTTCTGAATTCCGTTATACCGAACGCACCGAAGCTCCAGCACGTGTGCCTCCAGACCGGGGCCAAACACTACGTCGGGCCGTTCGAGTTGTTCGGCAAGATTCAACCTCACGAACCACCGTTTACGGAGGATCTGCCCAGATTGGACGCCCCGAATTTCTACTACACCCTTGAGGACTTACTGTTTGCGGAGGTGGCGAAGAAGGAGAACTTAACTTGGTCGGTGCACCGACCCGATGCGATATTCGGGTTTTCCCCTTACAGCATGATGAACATCATTGGCACGCTGTGCGTGTACGCCGCGATATGCAAGCACGAGGGGAGGCCACTGAAGTTTCCGGGAAGCAAAGCGGCGTGGAACTGTTACTCGGTGGCGTCGGATGCGGATCTGATAGCAGAGCAGCACATATGGGCGGCGGTGGACCCGTATGCGAAAAATGAAGCGTTTAATATCAACAACGGGGATGTGTTCAAGTGGAAGCATTTCTGGAAGGTGCTGGCGGAGCAGTTTGGGATAGAGGAGTACGGGATTGATGAGGGAGGCGGGAGGCTGAGCTTGGTGGAGCTGATGAAGGGGAAGGAGAAGGTGTGGGAGGAGATAGTGAGGGAGAACGAGCTGCAGCCGACGAAGCTGGCGGAGGTGGGAGTGTGGTGGTTTGTGGATGTTTGGTTGAGCGGAGAAGGGTTGTTGTGCAGCATGAACAAGAGTAAGGAGCATGGGTTTTTGGGGTTTAGAAATTCCAGGAATTCGTTTGTTACTTGGATTGATAAGATGAAGGCTTTCAAGATTGTGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

270

Amino Acids

30.7

Weight (kDa)

6.09

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRISE	PF22917	12 - 269	2.2e-25	PRISE-like Rossmann-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	8
AccBSI	CCGCTC	1 cut(s)	687
AccII	CGCG	1 cut(s)	314
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	2 cut(s)	150, 405
AcsI	RAATTY	4 cut(s)	19, 166, 748, 757
AcuI	CTGAAG	1 cut(s)	362
AcvI	CACGTG	1 cut(s)	55
AcyI	GRCGYC	2 cut(s)	159, 386
AdeI	CACNNNGTG	1 cut(s)	300
AfaI	GTAC	2 cut(s)	308, 536
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	3 cut(s)	116, 484, 796
AjnI	CCWGG	1 cut(s)	752
AluBI	AGCT	5 cut(s)	46, 567, 577, 628, 643
AluI	AGCT	5 cut(s)	46, 567, 577, 628, 643
Alw21I	GWGCWC	1 cut(s)	240
Alw44I	GTGCAC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	150, 405
AoxI	GGCC	3 cut(s)	72, 89, 335
ApaLI	GTGCAC	1 cut(s)	236
ApeKI	GCWGC	5 cut(s)	4, 412, 628, 631, 705
ApoI	RAATTY	4 cut(s)	19, 166, 748, 757
ArsI	GACNNNNNNTTYG	4 cut(s)	69, 101, 179, 211
Asp700I	GAANNNNTTC	2 cut(s)	494, 791
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	72, 89, 433
AsuC2I	CCSGG	2 cut(s)	70, 351
AvaII	GGWCC	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	240
BauI	CACGAG	1 cut(s)	326
BbrPI	CACGTG	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	4 cut(s)	424, 615, 643, 717
BceAI	ACGGC	2 cut(s)	76, 790
BciT130I	CCWGG	1 cut(s)	754
BcnI	CCSGG	2 cut(s)	70, 351
BfmI	CTRYAG	1 cut(s)	629
BisI	GCNGC	8 cut(s)	5, 312, 363, 413, 426, 629, 632, 706
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	8 cut(s)	6, 313, 364, 414, 427, 630, 633, 707
Bme1390I	CCNGG	3 cut(s)	70, 351, 754
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	3 cut(s)	72, 89, 433
BmiI	GGNNCC	2 cut(s)	73, 435
BmrFI	CCNGG	3 cut(s)	70, 351, 754
BmsI	GCATC	2 cut(s)	238, 382
BpmI	CTGGAG	2 cut(s)	32, 47
Bpu1102I	GCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	70, 351
BsaAI	YACGTR	1 cut(s)	55
BsaBI	GATNNNNATC	2 cut(s)	284, 396
BsaHI	GRCGYC	2 cut(s)	159, 386
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 584, 614, 716, 746
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse8I	GATNNNNATC	2 cut(s)	284, 396
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	3 cut(s)	397, 481, 679
BseJI	GATNNNNATC	2 cut(s)	284, 396
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	554
BseRI	GAGGAG	2 cut(s)	545, 620
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	4 cut(s)	424, 615, 643, 717
BsgI	GTGCAG	1 cut(s)	724
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	3 cut(s)	74, 91, 337
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	69, 350
BslI	CCNNNNNNNGG	1 cut(s)	70
BsnI	GGCC	3 cut(s)	74, 91, 337
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	142, 397
Bsp1720I	GCTNAGC	1 cut(s)	563
BspANI	GGCC	3 cut(s)	74, 91, 337
BspCNI	CTCAG	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	2 cut(s)	73, 435
BspMAI	CTGCAG	1 cut(s)	633
BspPI	GGATC	2 cut(s)	150, 405
BsrBI	CCGCTC	1 cut(s)	687
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	142, 397
BssNI	GRCGYC	2 cut(s)	159, 386
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	3 cut(s)	132, 195, 374
BstACI	GRCGYC	2 cut(s)	159, 386
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	4 cut(s)	296, 323, 510, 645
BstDEI	CTNAG	1 cut(s)	563
BstF5I	GGATG	3 cut(s)	397, 481, 679
BstFNI	CGCG	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	145, 400
BstMBI	GATC	2 cut(s)	142, 397
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 300, 392, 514, 640
BstNI	CCWGG	1 cut(s)	754
BstSCI	CCNGG	3 cut(s)	68, 349, 752
BstSFI	CTRYAG	1 cut(s)	629
BstSLI	GKGCMC	1 cut(s)	240
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	4 cut(s)	424, 615, 643, 717
BstX2I	RGATCY	2 cut(s)	142, 397
BstYI	RGATCY	2 cut(s)	142, 397
BsuRI	GGCC	3 cut(s)	74, 91, 337
BtsCI	GGATG	3 cut(s)	397, 481, 679
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	4 cut(s)	296, 323, 510, 645
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	72, 89, 433
CseI	GACGC	2 cut(s)	167, 375
Csp6I	GTAC	2 cut(s)	307, 535
CviAII	CATG	3 cut(s)	277, 709, 728
CviQI	GTAC	2 cut(s)	307, 535
DdeI	CTNAG	1 cut(s)	563
DpnI	GATC	2 cut(s)	144, 399
DpnII	GATC	2 cut(s)	142, 397
DraIII	CACNNNGTG	1 cut(s)	300
EciI	GGCGGA	2 cut(s)	527, 662
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	362
Eco72I	CACGTG	1 cut(s)	55
EcoRI	GAATTC	2 cut(s)	19, 757
EcoRII	CCWGG	1 cut(s)	752
FaeI	CATG	3 cut(s)	280, 712, 731
FaiI	YATR	8 cut(s)	29, 278, 319, 419, 421, 441, 710, 729
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FatI	CATG	3 cut(s)	276, 708, 727
FauI	CCCGC	1 cut(s)	548
FauNDI	CATATG	1 cut(s)	419
Fnu4HI	GCNGC	8 cut(s)	5, 312, 363, 413, 426, 629, 632, 706
FokI	GGATG	3 cut(s)	404, 488, 686
Fsp4HI	GCNGC	8 cut(s)	5, 312, 363, 413, 426, 629, 632, 706
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	8 cut(s)	5, 312, 363, 413, 426, 629, 632, 706
GsuI	CTGGAG	2 cut(s)	32, 47
HaeIII	GGCC	3 cut(s)	74, 91, 337
HapII	CCGG	2 cut(s)	69, 350
HgaI	GACGC	2 cut(s)	167, 375
HhaI	GCGC	1 cut(s)	9
Hin1I	GRCGYC	2 cut(s)	159, 386
Hin1II	CATG	3 cut(s)	280, 712, 731
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	2 cut(s)	69, 350
Hpy166II	GTNNAC	4 cut(s)	135, 238, 307, 433
Hpy188I	TCNGA	3 cut(s)	18, 391, 402
Hpy188III	TCNNGA	4 cut(s)	64, 122, 499, 796
Hpy8I	GTNNAC	4 cut(s)	135, 238, 307, 433
Hpy99I	CGWCG	3 cut(s)	89, 391, 640
HpyAV	CCTTC	7 cut(s)	208, 496, 577, 583, 589, 686, 781
HpyCH4III	ACNGT	3 cut(s)	132, 195, 374
HpyCH4IV	ACGT	3 cut(s)	12, 54, 84
HpyCH4V	TGCA	4 cut(s)	238, 321, 631, 705
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 300, 392, 514, 640
HpyF3I	CTNAG	1 cut(s)	563
HpySE526I	ACGT	3 cut(s)	12, 54, 84
Hsp92I	GRCGYC	2 cut(s)	159, 386
Hsp92II	CATG	3 cut(s)	280, 712, 731
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	142, 397
LmnI	GCTCC	4 cut(s)	51, 514, 574, 724
Lsp1109I	GCAGC	4 cut(s)	424, 615, 643, 717
LweI	GCATC	2 cut(s)	238, 382
MaeII	ACGT	3 cut(s)	12, 54, 84
MaeIII	GTNAC	2 cut(s)	374, 766
MalI	GATC	2 cut(s)	144, 399
MbiI	CCGCTC	1 cut(s)	687
MboI	GATC	2 cut(s)	142, 397
MboII	GAAGA	1 cut(s)	223
MflI	RGATCY	2 cut(s)	142, 397
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	4 cut(s)	19, 166, 748, 757
MmeI	TCCRAC	1 cut(s)	369
MroXI	GAANNNNTTC	2 cut(s)	494, 791
MseI	TTAA	2 cut(s)	224, 459
MspI	CCGG	2 cut(s)	69, 350
MspR9I	CCNGG	3 cut(s)	70, 351, 754
MvaI	CCWGG	1 cut(s)	754
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	5 cut(s)	206, 300, 392, 514, 640
NciI	CCSGG	2 cut(s)	70, 351
NdeI	CATATG	1 cut(s)	419
NdeII	GATC	2 cut(s)	142, 397
NlaIII	CATG	3 cut(s)	280, 712, 731
NlaIV	GGNNCC	2 cut(s)	73, 435
NsbI	TGCGCA	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	2 cut(s)	494, 791
PfeI	GAWTC	1 cut(s)	112
PfoI	TCCNGGA	2 cut(s)	349, 752
PkrI	GCNGC	8 cut(s)	6, 313, 364, 414, 427, 630, 633, 707
PmaCI	CACGTG	1 cut(s)	55
PmlI	CACGTG	1 cut(s)	55
Ppu21I	YACGTR	1 cut(s)	55
Psp1406I	AACGTT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	752
PspCI	CACGTG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	2 cut(s)	73, 435
PspPI	GGNCC	3 cut(s)	72, 89, 433
PstI	CTGCAG	1 cut(s)	633
PsuI	RGATCY	2 cut(s)	142, 397
RsaI	GTAC	2 cut(s)	308, 536
RsaNI	GTAC	2 cut(s)	307, 535
SaqAI	TTAA	2 cut(s)	224, 459
SatI	GCNGC	8 cut(s)	5, 312, 363, 413, 426, 629, 632, 706
Sau3AI	GATC	2 cut(s)	142, 397
Sau96I	GGNCC	3 cut(s)	72, 89, 433
ScrFI	CCNGG	3 cut(s)	70, 351, 754
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	2 cut(s)	238, 382
SfcI	CTRYAG	1 cut(s)	629
SinI	GGWCC	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	4 cut(s)	19, 166, 748, 757
StyD4I	CCNGG	3 cut(s)	68, 349, 752
TaaI	ACNGT	3 cut(s)	132, 195, 374
TaiI	ACGT	3 cut(s)	15, 57, 87
TaqI	TCGA	1 cut(s)	96
TasI	AATT	4 cut(s)	19, 166, 748, 757
TauI	GCSGC	3 cut(s)	314, 365, 428
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	224, 459
Tru9I	TTAA	2 cut(s)	224, 459
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	5 cut(s)	4, 412, 628, 631, 705
TspDTI	ATGAA	5 cut(s)	296, 465, 596, 725, 800
TspGWI	ACGGA	2 cut(s)	13, 152
TspRI	CASTG	1 cut(s)	345
VneI	GTGCAC	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	4 cut(s)	19, 166, 748, 757
XmnI	GAANNNNTTC	2 cut(s)	494, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.