Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Forward (+)

22232667 .. 22233281

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1108300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAACATAATTGGTGCGCTTGGTTTAACTTGGTCGGTACATCGGCCTAATAATATTTTTGGGTTTTCTCCTTATAGCTTGATAAACATAATTGGTGCGCTTTGTGTTTATGCTGCTATATGTAAGAAGGAAGGAAGACCATTGAAGTTTCCCGGTAGAAAAGCGGCTTGGGAGTGTTATGCGGTGGCTTCGGATGCAAATTTGATAGCAGAGCAGCATATATGGGCGGCAGTGGATCCGTATGCGAAAAACGAAGCGTTTAATGTGAACAATGGAGATGTGTTTAAGTGGAAGCATTTTTGGGAGGTGTTGGCTGAGCAGTTTGGGATCGAGGAGTATGGGTTTGATAAGGAGGAGAGTGGTAGGCTGAGGTTGGTCGAGATGATGGAAGGGAAAGTCGGTGTGTGGGAGGAGATTGTGAGGGAGAATGAGCTGCAGCCGACGAAGTTGGAGGAGGTGGCGGTGTGGTGGTTTGCTGACTTTGTGTTGGGTGGGGAGGCTTTGTCGGACAGTATGAATAAGAGCAAAGAGCATGGCTTTTTGGGGTTTAGGAATTCCAAAAAGTCCTTCATTTCGTGGATTAAGAAGATGAAGGCTTACAAGATTGTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

205

Amino Acids

23.29

Weight (kDa)

6.45

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRISE	PF22917	10 - 204	3.1e-12	PRISE-like Rossmann-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	164, 182, 227, 461
AclWI	GGATC	3 cut(s)	230, 243, 335
AcsI	RAATTY	2 cut(s)	199, 553
AfaI	GTAC	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	4 cut(s)	151, 183, 551, 583
AluBI	AGCT	2 cut(s)	78, 433
AluI	AGCT	2 cut(s)	78, 433
AlwI	GGATC	3 cut(s)	230, 243, 335
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	4 cut(s)	113, 214, 433, 436
ApoI	RAATTY	2 cut(s)	199, 553
AspLEI	GCGC	2 cut(s)	19, 100
AsuC2I	CCSGG	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	142
BbvCI	CCTCAGC	1 cut(s)	368
BbvI	GCAGC	4 cut(s)	100, 226, 420, 448
BccI	CCATC	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	434
BisI	GCNGC	6 cut(s)	114, 165, 215, 228, 434, 437
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	6 cut(s)	115, 166, 216, 229, 435, 438
Bme1390I	CCNGG	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	368
Bpu1102I	GCTNAGC	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	153
BsaXI	ACNNNNNCTCC	4 cut(s)	326, 356, 488, 518
BseGI	GGATG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	306, 359
BseRI	GAGGAG	4 cut(s)	347, 368, 425, 467
BseXI	GCAGC	4 cut(s)	100, 226, 420, 448
BshFI	GGCC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	153
BsnI	GGCC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	235, 327
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	4 cut(s)	164, 182, 227, 461
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	2 cut(s)	307, 360
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	438
BspPI	GGATC	3 cut(s)	230, 243, 335
BssMI	GATC	2 cut(s)	235, 327
Bst4CI	ACNGT	1 cut(s)	512
BstDEI	CTNAG	2 cut(s)	315, 368
BstF5I	GGATG	1 cut(s)	199
BstHHI	GCGC	2 cut(s)	19, 100
BstKTI	GATC	2 cut(s)	238, 330
BstMBI	GATC	2 cut(s)	235, 327
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	434
BstV1I	GCAGC	4 cut(s)	100, 226, 420, 448
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
CfoI	GCGC	2 cut(s)	19, 100
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	2 cut(s)	533, 612
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	2 cut(s)	315, 368
DpnI	GATC	2 cut(s)	237, 329
DpnII	GATC	2 cut(s)	235, 327
EcoRI	GAATTC	1 cut(s)	553
FaeI	CATG	2 cut(s)	536, 615
FatI	CATG	2 cut(s)	532, 611
Fnu4HI	GCNGC	6 cut(s)	114, 165, 215, 228, 434, 437
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	6 cut(s)	114, 165, 215, 228, 434, 437
GlaI	GCGC	2 cut(s)	18, 99
GluI	GCNGC	6 cut(s)	114, 165, 215, 228, 434, 437
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	2 cut(s)	19, 100
Hin1II	CATG	2 cut(s)	536, 615
Hin6I	GCGC	2 cut(s)	17, 98
HinP1I	GCGC	2 cut(s)	17, 98
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	193, 508
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	445
HpyAV	CCTTC	5 cut(s)	121, 125, 383, 577, 586
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	2 cut(s)	197, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	315, 368
Hsp92II	CATG	2 cut(s)	536, 615
HspAI	GCGC	2 cut(s)	17, 98
Kzo9I	GATC	2 cut(s)	235, 327
LpnPI	CCDG	1 cut(s)	166
Lsp1109I	GCAGC	4 cut(s)	100, 226, 420, 448
LweI	GCATC	1 cut(s)	184
MalI	GATC	2 cut(s)	237, 329
MboI	GATC	2 cut(s)	235, 327
MboII	GAAGA	2 cut(s)	147, 598
MflI	RGATCY	1 cut(s)	235
MluCI	AATT	4 cut(s)	9, 90, 199, 553
MmeI	TCCRAC	2 cut(s)	429, 486
MnlI	CCTC	9 cut(s)	298, 325, 346, 363, 403, 414, 445, 448, 490
MseI	TTAA	4 cut(s)	26, 261, 285, 582
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	235, 327
NlaIII	CATG	2 cut(s)	536, 615
NlaIV	GGNNCC	1 cut(s)	237
PkrI	GCNGC	6 cut(s)	115, 166, 216, 229, 435, 438
PspN4I	GGNNCC	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	438
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SaqAI	TTAA	4 cut(s)	26, 261, 285, 582
SatI	GCNGC	6 cut(s)	114, 165, 215, 228, 434, 437
Sau3AI	GATC	2 cut(s)	235, 327
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	5 cut(s)	80, 309, 374, 435, 459
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	434
Sse9I	AATT	4 cut(s)	9, 90, 199, 553
SsiI	CCGC	4 cut(s)	164, 182, 227, 461
SspI	AATATT	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	512
TaqI	TCGA	2 cut(s)	330, 378
TasI	AATT	4 cut(s)	9, 90, 199, 553
TauI	GCSGC	2 cut(s)	167, 230
Tru1I	TTAA	4 cut(s)	26, 261, 285, 582
Tru9I	TTAA	4 cut(s)	26, 261, 285, 582
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	4 cut(s)	113, 214, 433, 436
TspDTI	ATGAA	4 cut(s)	17, 530, 559, 605
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	237
XapI	RAATTY	2 cut(s)	199, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.