Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000626

Physical Location & Seq

Genomic Coordinates Forward (+)

67034666 .. 67036290

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27802

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAGAGTGTTGCGCTAATGATCGATGTAACGGGAATAGTAGGCAACAGCCTAATTGAGATTCTTCCACTCGCAGATACTCCCGGCGGTCCATGGAAGGTCTATGGTGTTGCATGCCGTCCGCGCCCAAATTGGAACACTGACCATCCTGTTGACTACATCCACTGCAATATCTCAGACCCAGAAGACACCAAATTCGAACTCTCCCCGTTAACCGATGTCACGCACATCTTTTACGTGACATGGACCAATAAAGCCACTGAAATTGAGAATTGTGAGGCCAACGGTGCTATGTTCCGGAATGTGCTACAGGTCATTATCCCAGTGGCTCCGAATCTCCGTCACATCTGCCTCCAAACTGGGAGCAAACACTATGTTGGGCCATCTGATTGCGGAGCAGCATATATGGCAGCGGTGGATCCAAATGCCAAAAACGAAGCGTTTAACATCAATAATGGGGATGTGTTTAGGTGGAAGAAACTTTGGAAGGTGTTGGCTGAGGAATTTGGGATTGAGGAGTATGGTTTTGATGAGAATGGTGAGAAGTTGAGCTTGGTGGAGATGATGAAGGACAAAGGTGGTGTGTGGGAAGAGATAGTGAGGAAGAATCAGCTGCAACCCACCAAGTTAGAGGAGGTTGCAGTTTGGCGGTTTGGTGACTTGGTTTTGGGTAACATGCCTGTCAAGGAGCATGGCTTTTTGGGGTTCAGGAATTCCGAAAAGTCATTCGCATCGTGGATTGAAAAAATGAAAGCTCACAAGATTGTGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008202 GO:0009611 GO:0010051 GO:0016491 GO:0016627 GO:0016628 GO:0032501 GO:0032502 GO:0035671 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

257

Amino Acids

28.95

Weight (kDa)

5.32

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24220 AT4G24220
fragaria_vesca	FvH4_2g04580 FvH4_2g04580 FvH4_2g04580 FvH4_4g06071 FvH4_5g25130
malus_domestica	MD05G1094500.v1.1 MD05G1108300.v1.1 MD08G1088400.v1.1 MD15G1073200.v1.1 MD15G1073300.v1.1 MD15G1073400.v1.1 MD15G1073500.v1.1 MD15G1073600.v1.1
prunus_persica	Prupe.1G426100_v2.0.a1 Prupe.1G426100_v2.0.a1 Prupe.1G426200_v2.0.a1 Prupe.1G426300_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.1G426400_v2.0.a1 Prupe.8G139400_v2.0.a1 Prupe.8G139400_v2.0.a1
pyrus_communis	pycom05g09350 pycom08g07190 pycom13g22780 pycom15g06840 pycom15g06850 pycom15g06870
rosa_chinensis	RchiOBHm_Chr6g0254161 RchiOBHm_Chr6g0254181 RchiOBHm_Chr6g0254191 RchiOBHm_Chr6g0309171 RchiOBHm_Chr6g0309181 RchiOBHm_Chr6g0309191 RchiOBHm_Chr6g0309201
rosa_laevigata	RLG00000010582 RLG00000010583 RLG00000014937 RLG00000014938
rosa_multiflora	Rmu_co8060540.1_g000001 Rmu_co8332663.1_g000001 Rmu_sc0000010.1_g000017 Rmu_sc0003711.1_g000008 Rmu_sc0016971.1_g000003 Rmu_sc0020102.1_g000006 Rmu_sc0020102.1_g000008
rosa_roxburghii	Rroxscaffold_7G00159570 Rroxscaffold_7G00159580 Rroxscaffold_7G00159590 Rroxscaffold_7G00211100
rosa_rugosa	Rorug05G0550400 Rorug06G0370100 Rorug06G0370300
rosa_samantha	Rh6AG066900 Rh6AG483200 Rh6AG483300 Rh6AG483400 Rh6BG059800 Rh6BG060000 Rh6BG492200 Rh6BG492300 Rh6BG492500 Rh6CG059700 Rh6CG059800 Rh6CG496900 Rh6CG497000 Rh6CG497200 Rh6CG497400 Rh6DG056700 Rh6DG056800 Rh6DG483800 Rh6DG484000
rosa_wichuraiana	Rw6G005860 Rw6G005870 Rw6G042070 Rw6G042080 Rw6G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	124
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	5 cut(s)	87, 122, 393, 413, 649
AclWI	GGATC	2 cut(s)	413, 426
AcsI	RAATTY	3 cut(s)	194, 503, 712
AgsI	TTSAA	1 cut(s)	743
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	3 cut(s)	552, 613, 755
AluI	AGCT	3 cut(s)	552, 613, 755
AlwI	GGATC	2 cut(s)	413, 426
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	2 cut(s)	279, 380
ApeKI	GCWGC	3 cut(s)	398, 410, 613
ApoI	RAATTY	3 cut(s)	194, 503, 712
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspLEI	GCGC	2 cut(s)	16, 126
AspS9I	GGNCC	3 cut(s)	89, 246, 380
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	551, 668
AsuII	TTCGAA	1 cut(s)	198
AvaII	GGWCC	2 cut(s)	89, 246
BamHI	GGATCC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	410, 422, 600
BccI	CCATC	2 cut(s)	153, 391
BceAI	ACGGC	2 cut(s)	102, 754
BcnI	CCSGG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	308
BisI	GCNGC	3 cut(s)	399, 411, 614
BlsI	GCNGC	3 cut(s)	400, 412, 615
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	89, 246
BmgT120I	GGNCC	3 cut(s)	89, 246, 380
BmiI	GGNNCC	2 cut(s)	330, 420
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	2 cut(s)	317, 369
BmsI	GCATC	1 cut(s)	740
BmuI	ACTGGG	2 cut(s)	317, 369
BpiI	GAAGAC	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	84
Bsa29I	ATCGAT	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	297
Bse1I	ACTGG	2 cut(s)	323, 364
BseAI	TCCGGA	1 cut(s)	297
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	3 cut(s)	145, 159, 466
BseMII	CTCAG	2 cut(s)	189, 489
BseNI	ACTGG	2 cut(s)	323, 364
BseRI	GAGGAG	2 cut(s)	530, 647
BseXI	GCAGC	3 cut(s)	410, 422, 600
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	281, 382
BshVI	ATCGAT	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	84, 298
BsnI	GGCC	2 cut(s)	281, 382
Bsp119I	TTCGAA	1 cut(s)	198
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	21, 418
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	5 cut(s)	87, 122, 393, 413, 649
BspANI	GGCC	2 cut(s)	281, 382
BspCNI	CTCAG	2 cut(s)	188, 490
BspDI	ATCGAT	1 cut(s)	24
BspEI	TCCGGA	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	330, 420
BspPI	GGATC	2 cut(s)	413, 426
BspT104I	TTCGAA	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	323, 364
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	21, 418
BssT1I	CCWWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	585
BstBAI	YACGTR	1 cut(s)	238
BstBI	TTCGAA	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	175, 498
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	3 cut(s)	145, 159, 466
BstFNI	CGCG	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	16, 126
BstKTI	GATC	2 cut(s)	24, 421
BstMBI	GATC	2 cut(s)	21, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 287, 407
BstNSI	RCATGY	2 cut(s)	117, 679
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	3 cut(s)	410, 422, 600
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	281, 382
BsuTUI	ATCGAT	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	145, 159, 466
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	4 cut(s)	138, 163, 258, 330
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	2 cut(s)	16, 126
Cfr13I	GGNCC	3 cut(s)	89, 246, 380
ClaI	ATCGAT	1 cut(s)	24
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	5 cut(s)	93, 114, 243, 676, 692
DdeI	CTNAG	2 cut(s)	175, 498
DpnI	GATC	2 cut(s)	23, 420
DpnII	GATC	2 cut(s)	21, 418
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	92
Eco47I	GGWCC	2 cut(s)	89, 246
EcoRI	GAATTC	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	5 cut(s)	96, 117, 246, 679, 695
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FatI	CATG	5 cut(s)	92, 113, 242, 675, 691
Fnu4HI	GCNGC	3 cut(s)	399, 411, 614
FokI	GGATG	3 cut(s)	132, 146, 473
Fsp4HI	GCNGC	3 cut(s)	399, 411, 614
GlaI	GCGC	2 cut(s)	15, 125
GluI	GCNGC	3 cut(s)	399, 411, 614
HaeIII	GGCC	2 cut(s)	281, 382
HapII	CCGG	2 cut(s)	84, 298
HhaI	GCGC	2 cut(s)	16, 126
Hin1II	CATG	5 cut(s)	96, 117, 246, 679, 695
Hin6I	GCGC	2 cut(s)	14, 124
HinP1I	GCGC	2 cut(s)	14, 124
HincII	GTYRAC	2 cut(s)	154, 213
HindII	GTYRAC	2 cut(s)	154, 213
HinfI	GANTC	3 cut(s)	61, 334, 607
HpaI	GTTAAC	1 cut(s)	213
HpaII	CCGG	2 cut(s)	84, 298
HphI	GGTGA	2 cut(s)	551, 668
Hpy166II	GTNNAC	2 cut(s)	154, 213
Hpy188I	TCNGA	4 cut(s)	178, 333, 388, 718
Hpy188III	TCNNGA	2 cut(s)	298, 709
Hpy8I	GTNNAC	2 cut(s)	154, 213
HpyAV	CCTTC	3 cut(s)	91, 481, 562
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	113, 168, 616, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 287, 407
HpyF3I	CTNAG	2 cut(s)	175, 498
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	96, 117, 246, 679, 695
HspAI	GCGC	2 cut(s)	14, 124
Kpn2I	TCCGGA	1 cut(s)	297
KspAI	GTTAAC	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	21, 418
LmnI	GCTCC	4 cut(s)	334, 363, 395, 688
LpnPI	CCDG	9 cut(s)	97, 162, 195, 296, 311, 336, 345, 693, 694
Lsp1109I	GCAGC	3 cut(s)	410, 422, 600
LweI	GCATC	1 cut(s)	740
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	6 cut(s)	28, 220, 238, 341, 656, 671
MalI	GATC	2 cut(s)	23, 420
MboI	GATC	2 cut(s)	21, 418
MboII	GAAGA	5 cut(s)	56, 197, 487, 602, 616
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	7 cut(s)	54, 130, 194, 264, 271, 503, 712
MnlI	CCTC	7 cut(s)	271, 362, 493, 508, 594, 625, 628
MroI	TCCGGA	1 cut(s)	297
MseI	TTAA	2 cut(s)	212, 444
MspA1I	CMGCKG	2 cut(s)	413, 613
MspI	CCGG	2 cut(s)	84, 298
MspR9I	CCNGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	3 cut(s)	123, 287, 407
NciI	CCSGG	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	2 cut(s)	21, 418
NlaIII	CATG	5 cut(s)	96, 117, 246, 679, 695
NlaIV	GGNNCC	2 cut(s)	330, 420
NmuCI	GTSAC	4 cut(s)	220, 238, 341, 656
NspI	RCATGY	2 cut(s)	117, 679
NspV	TTCGAA	1 cut(s)	198
PaeI	GCATGC	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	61, 334, 607
PkrI	GCNGC	3 cut(s)	400, 412, 615
Ppu21I	YACGTR	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	330, 420
PspPI	GGNCC	3 cut(s)	89, 246, 380
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	613
SaqAI	TTAA	2 cut(s)	212, 444
SatI	GCNGC	3 cut(s)	399, 411, 614
Sau3AI	GATC	2 cut(s)	21, 418
Sau96I	GGNCC	3 cut(s)	89, 246, 380
ScrFI	CCNGG	1 cut(s)	84
SfaNI	GCATC	1 cut(s)	740
SfcI	CTRYAG	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	198
SinI	GGWCC	2 cut(s)	89, 246
SphI	GCATGC	1 cut(s)	117
Sse9I	AATT	7 cut(s)	54, 130, 194, 264, 271, 503, 712
SsiI	CCGC	5 cut(s)	87, 122, 393, 413, 649
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	24, 198
TasI	AATT	7 cut(s)	54, 130, 194, 264, 271, 503, 712
TfiI	GAWTC	3 cut(s)	61, 334, 607
Tru1I	TTAA	2 cut(s)	212, 444
Tru9I	TTAA	2 cut(s)	212, 444
TscAI	CASTG	4 cut(s)	145, 170, 265, 330
TseFI	GTSAC	4 cut(s)	220, 238, 341, 656
TseI	GCWGC	3 cut(s)	398, 410, 613
Tsp45I	GTSAC	4 cut(s)	220, 238, 341, 656
TspDTI	ATGAA	2 cut(s)	581, 764
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	4 cut(s)	145, 170, 265, 330
VpaK11BI	GGWCC	2 cut(s)	89, 246
XapI	RAATTY	3 cut(s)	194, 503, 712
XceI	RCATGY	2 cut(s)	117, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.