Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0016661

Physical Location & Seq

Genomic Coordinates Reverse (-)

7278900 .. 7281247

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1088300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGTTCTTACCAACTTCAATGGAGCTGGCGTTGGATTCGGATTTGGTGTTGGCTGCGGTTTTGGCGTTGGATGGGGTTTCGGAGGCACACCTTTGAACTTCTTGGGCCTTGGTGTAGGCGGAGGCTGTGGGGTTGGACTAGGTCTCGGATGGGGCTTCGGCACTGCCTTTGGTAGCCAGTATCATTCATCTGGGGTCACATACCAGGGCATAGACTTCGGCAAGAAGGATCAAGATGGTGCTTCACAGAAAAGCAACCAGGACATTCGTGCCTCGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010876 GO:0031967 GO:0031975 GO:0032365 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071702 GO:1901965 GO:1990052

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

9.28

Weight (kDa)

7.8

Isoelectric Point (pI)

8.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27695 AT1G27695
fragaria_vesca	FvH4_2g33370 FvH4_2g33370 FvH4_2g33370
malus_domestica	MD08G1088300.v1.1
prunus_persica	Prupe.1G426000_v2.0.a1 Prupe.1G426000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0309211
rosa_roxburghii	Rroxscaffold_7G00159560
rosa_rugosa	Rorug06G0370300
rosa_samantha	Rh6BG492600 Rh6DG484100
rosa_wichuraiana	Rw6G042100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	277
AciI	CCGC	2 cut(s)	57, 120
AclWI	GGATC	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	19, 97
AjnI	CCWGG	2 cut(s)	204, 258
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	3 cut(s)	66, 144, 230
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	2 cut(s)	206, 260
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	140
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	206, 260
BmgT120I	GGNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	206, 260
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	109, 205
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	206, 260
BseDI	CCNNGG	2 cut(s)	109, 205
BseGI	GGATG	2 cut(s)	77, 155
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	229
Bsp68I	TCGCGA	1 cut(s)	277
BspACI	CCGC	2 cut(s)	57, 120
BspANI	GGCC	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	109, 205
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	206, 260
BstC8I	GCNNGC	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	77, 155
BstFNI	CGCG	1 cut(s)	277
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstNI	CCWGG	2 cut(s)	206, 260
BstSCI	CCNGG	2 cut(s)	204, 258
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	77, 155
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
BtuMI	TCGCGA	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	106
CviJI	RGCY	6 cut(s)	26, 54, 108, 126, 156, 177
CviKI_1	RGCY	6 cut(s)	26, 54, 108, 126, 156, 177
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	204, 258
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaiI	YATR	2 cut(s)	202, 212
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	2 cut(s)	84, 162
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	36
Hpy188I	TCNGA	3 cut(s)	41, 83, 149
Hpy188III	TCNNGA	2 cut(s)	233, 276
HpyAV	CCTTC	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	7 cut(s)	12, 177, 191, 191, 218, 245, 272
Lsp1109I	GCAGC	1 cut(s)	41
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MmeI	TCCRAC	3 cut(s)	13, 49, 115
MnlI	CCTC	2 cut(s)	77, 116
MspR9I	CCNGG	2 cut(s)	206, 260
MvaI	CCWGG	2 cut(s)	206, 260
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	63
NdeII	GATC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	196
NruI	TCGCGA	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	36
PflFI	GACNNNGTC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	204, 258
PspGI	CCWGG	2 cut(s)	204, 258
PspPI	GGNCC	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	141
RruI	TCGCGA	1 cut(s)	277
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	206, 260
SetI	ASST	3 cut(s)	28, 94, 145
SsiI	CCGC	2 cut(s)	57, 120
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	204, 258
StyI	CCWWGG	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	36
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	141
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.