Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013188

Physical Location & Seq

Genomic Coordinates Forward (+)

10112564 .. 10114491

Gene Structure 1928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGAGAGGAAGAAGAAAAGAAAGAGAAAGGCGATGAAATCATCACGGCCGTTTACAAGGTTCACCTTCACTGCCGGAAATGTGCATGCGACATCAAAAAGCCTCTCCTTCGATTCCAAGGGGTTCAAAATGTGGACTTTGATTTGGAGAAGAACGAGATCAAAGTAAAAGGGAAAATAGAAGTCGTGAAGATTCACAAACAAATCGAGAAATGGAGCAAGAAAAAAGTTGAGCTCATCTCTCCCAAACCTTCTGAGGTTAAGAAAACCACCACTACAACAACAACTACTTCTGTGGTAGAAAAGAAGACCACCGAGATTAAAAAGGACGTTATTCGTACGACAGTACTAAAGGTACACATTCATTGCGCACAGTGTGACAAAGATCTTCAGCACAAACTCTTGAAACATAAAGCTATCCACATTGTCAAAACCGATACAAAGGCGCAAACTCTAACGGTACAAGGGACGATAGAATCCGCAAAACTCTTAGCCTATATAAAGAAGAAAGTTCACAAACATGCAGAGATCATAAGCTCAAAGACCGAAGAAGAGAAGAAGAAGGAAGAAGAGGATAAGAAGAAGAAGGAAGAAGAGGATAAGAAGAAGAAGGAAGATGAGAAGAAGAAAGAGGAAGAGAAGAAGAAAGAAGAGGAGAATAAGAAGAAGGAAGGAGAAAAAAAGAAAGAAGAAGTAAAAGTAGAAGTAACAACCAAAACGATTACTCAAGTTGTGGAGTATAAAGAGATAGTAAAAGTTGAGGGCCAAAAAGATAAAGATGGAAACATACCTTACTTTGTCCACTACGTATACGCTCCACAATTGTTCAGTGATGAAAACCCTAATGCTTGTCGCATTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

287

Amino Acids

33.41

Weight (kDa)

9.18

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	19 - 71	9e-12	Heavy-metal-associated domain
HMA	PF00403	117 - 173	2e-07	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29000 AT1G29000
fragaria_vesca	FvH4_7g08060
malus_domestica	MD02G1236600.v1.1
prunus_persica	Prupe.2G108300_v2.0.a1 Prupe.2G108300_v2.0.a1
pyrus_communis	pycom02g19870
rosa_chinensis	RchiOBHm_Chr1g0341261
rosa_laevigata	RLG00000029076
rosa_multiflora	Rmu_sc0004092.1_g000045
rosa_roxburghii	Rroxscaffold_4G00311900
rosa_rugosa	Rorug01G0158300.1 Rorug01G0158400.1
rosa_samantha	Rh1AG172700 Rh1BG140800 Rh1CG160800 Rh1DG173000
rosa_wichuraiana	Rw1G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	810
AciI	CCGC	1 cut(s)	480
AcoI	YGGCCR	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	374
AdeI	CACNNNGTG	1 cut(s)	377
AfaI	GTAC	4 cut(s)	340, 348, 357, 462
AgsI	TTSAA	2 cut(s)	128, 406
AluBI	AGCT	3 cut(s)	235, 416, 537
AluI	AGCT	3 cut(s)	235, 416, 537
Alw21I	GWGCWC	1 cut(s)	237
AoxI	GGCC	2 cut(s)	48, 763
AspLEI	GCGC	2 cut(s)	371, 448
AspS9I	GGNCC	1 cut(s)	763
AsuHPI	GGTGA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	237
BccI	CCATC	1 cut(s)	773
BceAI	ACGGC	2 cut(s)	35, 63
BfaI	CTAG	1 cut(s)	862
BglII	AGATCT	1 cut(s)	385
BmcAI	AGTACT	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	763
BpiI	GAAGAC	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpuEI	CTTGAG	1 cut(s)	711
BsaAI	YACGTR	1 cut(s)	808
BsaJI	CCNNGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	668
BseX3I	CGGCCG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 765
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	76
BsiWI	CGTACG	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	50, 765
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	159, 385, 528
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	50, 765
BspCNI	CTCAG	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	3 cut(s)	159, 385, 528
BssNAI	GTATAC	1 cut(s)	811
BssT1I	CCWWGG	1 cut(s)	118
Bst1107I	GTATAC	1 cut(s)	811
Bst4CI	ACNGT	3 cut(s)	346, 375, 460
Bst6I	CTCTTC	5 cut(s)	546, 564, 588, 630, 645
BstBAI	YACGTR	1 cut(s)	808
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	255, 490
BstHHI	GCGC	2 cut(s)	371, 448
BstKTI	GATC	3 cut(s)	162, 388, 531
BstMBI	GATC	3 cut(s)	159, 385, 528
BstMCI	CGRYCG	1 cut(s)	51
BstNSI	RCATGY	2 cut(s)	90, 524
BstSNI	TACGTA	1 cut(s)	808
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BstZ17I	GTATAC	1 cut(s)	811
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 765
BtgZI	GCGATG	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	3 cut(s)	70, 380, 835
Cac8I	GCNNGC	1 cut(s)	88
CfoI	GCGC	2 cut(s)	371, 448
Cfr13I	GGNCC	1 cut(s)	763
Csp6I	GTAC	4 cut(s)	339, 347, 356, 461
CviAII	CATG	2 cut(s)	87, 521
CviJI	RGCY	7 cut(s)	50, 103, 235, 416, 494, 537, 765
CviKI_1	RGCY	7 cut(s)	50, 103, 235, 416, 494, 537, 765
CviQI	GTAC	4 cut(s)	339, 347, 356, 461
DdeI	CTNAG	2 cut(s)	255, 490
DpnI	GATC	3 cut(s)	161, 387, 530
DpnII	GATC	3 cut(s)	159, 385, 528
DraIII	CACNNNGTG	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	5 cut(s)	546, 564, 588, 630, 645
EarI	CTCTTC	5 cut(s)	546, 564, 588, 630, 645
Ecl136II	GAGCTC	1 cut(s)	235
EclXI	CGGCCG	1 cut(s)	48
Eco105I	TACGTA	1 cut(s)	808
Eco130I	CCWWGG	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	237
Eco52I	CGGCCG	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	90, 524
FaiI	YATR	9 cut(s)	88, 411, 498, 500, 522, 533, 741, 788, 811
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	2 cut(s)	86, 520
FblI	GTMKAC	1 cut(s)	810
FriOI	GRGCYC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	862
FspI	TGCGCA	1 cut(s)	370
GlaI	GCGC	2 cut(s)	370, 447
HaeIII	GGCC	2 cut(s)	50, 765
HapII	CCGG	1 cut(s)	76
HhaI	GCGC	2 cut(s)	371, 448
Hin1II	CATG	2 cut(s)	90, 524
Hin6I	GCGC	2 cut(s)	369, 446
HinP1I	GCGC	2 cut(s)	369, 446
HinfI	GANTC	3 cut(s)	114, 193, 476
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	7 cut(s)	55, 64, 136, 358, 514, 802, 811
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	3 cut(s)	187, 208, 403
Hpy8I	GTNNAC	7 cut(s)	55, 64, 136, 358, 514, 802, 811
HpyAV	CCTTC	8 cut(s)	77, 119, 261, 556, 580, 604, 661, 665
HpyCH4III	ACNGT	3 cut(s)	346, 375, 460
HpyCH4IV	ACGT	2 cut(s)	330, 807
HpyCH4V	TGCA	2 cut(s)	86, 524
HpyF3I	CTNAG	2 cut(s)	255, 490
HpySE526I	ACGT	2 cut(s)	330, 807
Hsp92II	CATG	2 cut(s)	90, 524
HspAI	GCGC	2 cut(s)	369, 446
Kzo9I	GATC	3 cut(s)	159, 385, 528
LmnI	GCTCC	2 cut(s)	216, 820
LpnPI	CCDG	1 cut(s)	89
MaeI	CTAG	1 cut(s)	862
MaeII	ACGT	2 cut(s)	330, 807
MaeIII	GTNAC	2 cut(s)	377, 706
MalI	GATC	3 cut(s)	161, 387, 530
MboI	GATC	3 cut(s)	159, 385, 528
MfeI	CAATTG	1 cut(s)	821
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	821
MnlI	CCTC	7 cut(s)	114, 250, 565, 589, 625, 646, 754
MseI	TTAA	2 cut(s)	261, 321
MslI	CAYNNNNRTG	1 cut(s)	519
MspI	CCGG	1 cut(s)	76
MunI	CAATTG	1 cut(s)	821
NdeII	GATC	3 cut(s)	159, 385, 528
NlaIII	CATG	2 cut(s)	90, 524
NmuCI	GTSAC	1 cut(s)	377
NsbI	TGCGCA	1 cut(s)	370
NspI	RCATGY	2 cut(s)	90, 524
PaeI	GCATGC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	114, 193, 476
Pfl23II	CGTACG	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	808
Psp124BI	GAGCTC	1 cut(s)	237
PspLI	CGTACG	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	763
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	4 cut(s)	340, 348, 357, 462
RsaNI	GTAC	4 cut(s)	339, 347, 356, 461
RseI	CAYNNNNRTG	1 cut(s)	519
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	261, 321
Sau3AI	GATC	3 cut(s)	159, 385, 528
Sau96I	GGNCC	1 cut(s)	763
ScaI	AGTACT	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	726
SmoI	CTYRAG	1 cut(s)	726
SnaBI	TACGTA	1 cut(s)	808
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	1 cut(s)	821
SsiI	CCGC	1 cut(s)	480
SspMI	CTAG	1 cut(s)	862
SstI	GAGCTC	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	3 cut(s)	346, 375, 460
TaiI	ACGT	2 cut(s)	333, 810
TaqI	TCGA	2 cut(s)	112, 207
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	1 cut(s)	821
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	3 cut(s)	114, 193, 476
Tru1I	TTAA	2 cut(s)	261, 321
Tru9I	TTAA	2 cut(s)	261, 321
TscAI	CASTG	3 cut(s)	77, 380, 835
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	3 cut(s)	51, 353, 849
TspRI	CASTG	3 cut(s)	77, 380, 835
XceI	RCATGY	2 cut(s)	90, 524
XmiI	GTMKAC	1 cut(s)	810
XspI	CTAG	1 cut(s)	862
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.