Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0013188

Physical Location & Seq

Genomic Coordinates Forward (+)

35628440 .. 35631567

Gene Structure 3128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG173000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCAGCAAAAGAAGAAGCTAAGGAGAAAGATCGGAAAGACGACAAAGCAAAAGATGAAAAGAAAGCCAAGGAGAAAGATGGAGTAATCACTGCTGTTTATAAGGTTAACCTGCACTGCCCACAGTGTGCACGTGAGATCAAGAAGCCTCTTATTGCTACCCAAGGGGTTCACAATGTGGAGGTTGAAAGGGAAAAAGGTGAAATCAAGGTAAAAGGCAATTTCGACCCGACAAAGATACAGAAACGGCTTGAGAAACTTTGTAAGAAAAAGATTGAGTTAGTGTCACCCAAGGTCCAGATCAAGGAAAGCATCACAACTGAGAAAAAAGTAGTGAAGGAAACCAAAGAGGCAATTTCACGGACAACATTAGTGAAGGTTCACATGCATTGCCACAAATGTGAGCAAGATCTGAAGAAGAAGTTGTTAACGAACAAAGGTGTTCACAATGTTAAAACGGACATGAAAGCACAAACCCTAGCAGTGGAAGGAACAATTGATCCTGAAAAACTAATATCGTACTTGCGCAAAAAGGTGCACAAACACGCAGAGATTATACCCCCAAAACAAGAGAAGAAGGATGAGACGAAACAAAAGGAGAAGAGTTCCTCAAAACCCCCAGAGAAAAAGGAGGAAAAGAAAGAGAAGGAGAAGGAGAGTGGTAAATCTACTGAAATAGATTCCAAGGTTGTAGACGTTAAGGAAGAGATAAAGGTGGTGGAGGTTAAGACAAAAGAGGCGAGTGCTCCTTATTTCATTCACTATGTCTATGCTCCACAAATATTTAGTGATGAAAATCCAAATGCTTGCTCTATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

273

Amino Acids

31.24

Weight (kDa)

9.36

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	34 - 90	1.4e-10	Heavy-metal-associated domain
HMA	PF00403	126 - 181	1.2e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29000 AT1G29000
fragaria_vesca	FvH4_7g08060
malus_domestica	MD02G1236600.v1.1
prunus_persica	Prupe.2G108300_v2.0.a1 Prupe.2G108300_v2.0.a1
pyrus_communis	pycom02g19870
rosa_chinensis	RchiOBHm_Chr1g0341261
rosa_laevigata	RLG00000029076
rosa_multiflora	Rmu_sc0004092.1_g000045
rosa_roxburghii	Rroxscaffold_4G00311900
rosa_rugosa	Rorug01G0158300.1 Rorug01G0158400.1
rosa_samantha	Rh1AG172700 Rh1BG140800 Rh1CG160800 Rh1DG173000
rosa_wichuraiana	Rw1G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
Acc16I	TGCGCA	1 cut(s)	527
Acc36I	ACCTGC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	693
AclWI	GGATC	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	434
AcvI	CACGTG	1 cut(s)	134
AdeI	CACNNNGTG	2 cut(s)	128, 178
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	2 cut(s)	304, 484
AgsI	TTSAA	1 cut(s)	188
AleI	CACNNNNGTG	1 cut(s)	399
AloI	GAACNNNNNNTCC	2 cut(s)	484, 516
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	3 cut(s)	133, 540, 748
Alw26I	GTCTC	1 cut(s)	578
Alw44I	GTGCAC	2 cut(s)	129, 536
AlwI	GGATC	1 cut(s)	494
ApaLI	GTGCAC	2 cut(s)	129, 536
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	212, 279
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	2 cut(s)	133, 540
BbrPI	CACGTG	1 cut(s)	134
Bbv12I	GWGCWC	3 cut(s)	133, 540, 748
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmsI	GCATC	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	795
BsaJI	CCNNGG	4 cut(s)	69, 163, 291, 684
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 484
Bse3DI	GCAATG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	795
BseDI	CCNNGG	4 cut(s)	69, 163, 291, 684
BseGI	GGATG	1 cut(s)	586
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	2 cut(s)	304, 484
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	1 cut(s)	312
BseSI	GKGCMC	2 cut(s)	133, 540
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	98
BsiHKAI	GWGCWC	3 cut(s)	133, 540, 748
BslI	CCNNNNNNNGG	2 cut(s)	304, 484
BsmAI	GTCTC	1 cut(s)	578
BsmBI	CGTCTC	1 cut(s)	578
Bsp1286I	GDGCHC	3 cut(s)	133, 540, 748
Bsp143I	GATC	5 cut(s)	31, 138, 300, 409, 499
BspCNI	CTCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	388
BssECI	CCNNGG	4 cut(s)	69, 163, 291, 684
BssMI	GATC	5 cut(s)	31, 138, 300, 409, 499
BssT1I	CCWWGG	4 cut(s)	69, 163, 291, 684
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	2 cut(s)	596, 699
BstBAI	YACGTR	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	808
BstDEI	CTNAG	2 cut(s)	21, 321
BstF5I	GGATG	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	5 cut(s)	34, 141, 303, 412, 502
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	5 cut(s)	31, 138, 300, 409, 499
BstNSI	RCATGY	1 cut(s)	388
BstSLI	GKGCMC	2 cut(s)	133, 540
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	586
BtsI	GCAGTG	3 cut(s)	90, 115, 489
BtsIMutI	CAGTG	4 cut(s)	90, 115, 131, 489
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	808
CfoI	GCGC	1 cut(s)	528
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	2 cut(s)	385, 463
CviJI	RGCY	4 cut(s)	20, 68, 148, 250
CviKI_1	RGCY	4 cut(s)	20, 68, 148, 250
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	2 cut(s)	21, 321
DpnI	GATC	5 cut(s)	33, 140, 302, 411, 501
DpnII	GATC	5 cut(s)	31, 138, 300, 409, 499
DraIII	CACNNNGTG	2 cut(s)	128, 178
Eam1104I	CTCTTC	2 cut(s)	596, 699
EarI	CTCTTC	2 cut(s)	596, 699
Eco130I	CCWWGG	4 cut(s)	69, 163, 291, 684
Eco47I	GGWCC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	434
Eco72I	CACGTG	1 cut(s)	134
EcoT14I	CCWWGG	4 cut(s)	69, 163, 291, 684
EcoT22I	ATGCAT	1 cut(s)	390
ErhI	CCWWGG	4 cut(s)	69, 163, 291, 684
Esp3I	CGTCTC	1 cut(s)	578
FaeI	CATG	2 cut(s)	388, 466
FaiI	YATR	7 cut(s)	102, 386, 464, 557, 765, 771, 815
FatI	CATG	2 cut(s)	384, 462
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	479
FspI	TGCGCA	1 cut(s)	527
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	528
Hin1II	CATG	2 cut(s)	388, 466
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HincII	GTYRAC	2 cut(s)	109, 429
HindII	GTYRAC	2 cut(s)	109, 429
HinfI	GANTC	1 cut(s)	680
HpaI	GTTAAC	2 cut(s)	109, 429
HphI	GGTGA	2 cut(s)	212, 279
Hpy166II	GTNNAC	8 cut(s)	109, 131, 172, 382, 429, 445, 538, 694
Hpy188I	TCNGA	2 cut(s)	36, 414
Hpy188III	TCNNGA	3 cut(s)	142, 298, 503
Hpy8I	GTNNAC	8 cut(s)	109, 131, 172, 382, 429, 445, 538, 694
HpyAV	CCTTC	6 cut(s)	331, 370, 482, 571, 640, 646
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	2 cut(s)	133, 696
HpyCH4V	TGCA	4 cut(s)	115, 131, 388, 538
HpyF3I	CTNAG	2 cut(s)	21, 321
HpySE526I	ACGT	2 cut(s)	133, 696
Hsp92II	CATG	2 cut(s)	388, 466
HspAI	GCGC	1 cut(s)	526
KspAI	GTTAAC	2 cut(s)	109, 429
Kzo9I	GATC	5 cut(s)	31, 138, 300, 409, 499
LmnI	GCTCC	2 cut(s)	751, 778
LpnPI	CCDG	4 cut(s)	125, 311, 516, 633
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	2 cut(s)	133, 696
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	5 cut(s)	33, 140, 302, 411, 501
MboI	GATC	5 cut(s)	31, 138, 300, 409, 499
MboII	GAAGA	6 cut(s)	26, 427, 430, 586, 613, 716
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	3 cut(s)	133, 540, 748
MluCI	AATT	3 cut(s)	220, 354, 495
MnlI	CCTC	7 cut(s)	159, 175, 343, 619, 625, 715, 730
Mph1103I	ATGCAT	1 cut(s)	390
MseI	TTAA	5 cut(s)	108, 428, 453, 699, 726
MslI	CAYNNNNRTG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	495
NdeII	GATC	5 cut(s)	31, 138, 300, 409, 499
NlaIII	CATG	2 cut(s)	388, 466
NmuCI	GTSAC	1 cut(s)	285
NsbI	TGCGCA	1 cut(s)	527
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	680
PkrI	GCNGC	1 cut(s)	7
PmaCI	CACGTG	1 cut(s)	134
PmlI	CACGTG	1 cut(s)	134
Ppu21I	YACGTR	1 cut(s)	134
PsiI	TTATAA	1 cut(s)	102
PspCI	CACGTG	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	5 cut(s)	108, 428, 453, 699, 726
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	5 cut(s)	31, 138, 300, 409, 499
Sau96I	GGNCC	1 cut(s)	295
SduI	GDGCHC	3 cut(s)	133, 540, 748
SfaNI	GCATC	1 cut(s)	321
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	220, 354, 495
SspI	AATATT	1 cut(s)	783
SspMI	CTAG	1 cut(s)	479
StyI	CCWWGG	4 cut(s)	69, 163, 291, 684
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	2 cut(s)	136, 699
TaqI	TCGA	1 cut(s)	225
TasI	AATT	3 cut(s)	220, 354, 495
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	5 cut(s)	108, 428, 453, 699, 726
Tru9I	TTAA	5 cut(s)	108, 428, 453, 699, 726
TscAI	CASTG	4 cut(s)	97, 122, 131, 489
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	4 cut(s)	72, 479, 745, 807
TspGWI	ACGGA	2 cut(s)	376, 473
TspRI	CASTG	4 cut(s)	97, 122, 131, 489
VneI	GTGCAC	2 cut(s)	129, 536
VpaK11BI	GGWCC	1 cut(s)	295
XceI	RCATGY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	693
XspI	CTAG	1 cut(s)	479
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.