Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013188

Physical Location & Seq

Genomic Coordinates Forward (+)

17947599 .. 17964770

Gene Structure 17172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCAAGAAAGAAAATTAAGCTTGCATACTTAAGAGATGATGCTTCAAGAAAAGCCACCTTCAAGAAAAGGAAGAACGGGCTGATGAAGAAGGTAAAGGAACTTAGCATTCTTTGTGGAATTGATTCATCTGCTATCGTTTATAGCCAGTATGACATCAAACCAGAAGTTGGTCCGAACCCGGATGTAACCCGAAGGATAATCACAAGTGCTGCTAAAATGGCAGCAACAGCAGCTAAGGAGAAAGACAAAGACGAAACGAAAGATGAAAAGAAAGTGAAGGAGAAAGATGACGGAGTAATCAATGCTGTTTACAAAGTTAACCTCCACTGCAAGCAGTGTGCACGTGATATTAAGAAGCCTCTTATGGCTACCCAAGGGGTTCACAATGTAGAGGCTGATATGGAGAAAGGTGAAATAAAGGTAAAAGGAGTTTTCGACCCAACAAAAATTCAGAAACGGCTGGAGAAACTTTCTAAGAAAAAGGTCGAGTTAATATCACCCAAACCTCAGATCAAGGAAAGCACAGTAACAGAGAAAAAAGTAGTGAAGGAAACCAAAGAGCCAATTTCACGGACAATAGTGGTGAAGGTTCACATGCATTGCGACAAATGTGAGCAAGATTTGAAGAAGAAGTTAATAAAGAACAAAGGTATTCACACTGTAAAAACTGACATGAAAGCACAAACTCTAACAGTGGAAGGAACAATCGAGCCTGAAAAACTAATCTCGTATTTGCGAAAAAAGGTGCACAAACATGCAGAACTTGTGCCCTCGAAACCACAGAAAAAGGAAGAAACAAAAGAGAAGGAGAAGAAGTTCCCCAAAACCACCAGAGAAGGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

283

Amino Acids

32.06

Weight (kDa)

9.79

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	12 - 50	1.9e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)
HMA	PF00403	105 - 160	1.7e-11	Heavy-metal-associated domain
HMA	PF00403	196 - 252	1.8e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29000 AT1G29000
fragaria_vesca	FvH4_7g08060
malus_domestica	MD02G1236600.v1.1
prunus_persica	Prupe.2G108300_v2.0.a1 Prupe.2G108300_v2.0.a1
pyrus_communis	pycom02g19870
rosa_chinensis	RchiOBHm_Chr1g0341261
rosa_laevigata	RLG00000029076
rosa_multiflora	Rmu_sc0004092.1_g000045
rosa_roxburghii	Rroxscaffold_4G00311900
rosa_rugosa	Rorug01G0158300.1 Rorug01G0158400.1
rosa_samantha	Rh1AG172700 Rh1BG140800 Rh1CG160800 Rh1DG173000
rosa_wichuraiana	Rw1G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	450
AcvI	CACGTG	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflII	CTTAAG	1 cut(s)	31
AgsI	TTSAA	3 cut(s)	48, 64, 628
AloI	GAACNNNNNNTCC	2 cut(s)	803, 835
AluBI	AGCT	2 cut(s)	22, 236
AluI	AGCT	2 cut(s)	22, 236
Alw21I	GWGCWC	2 cut(s)	346, 753
Alw44I	GTGCAC	2 cut(s)	342, 749
ApaLI	GTGCAC	2 cut(s)	342, 749
ApeKI	GCWGC	3 cut(s)	212, 224, 233
ApoI	RAATTY	1 cut(s)	450
Asp700I	GAANNNNTTC	2 cut(s)	124, 818
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	425, 492, 598
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	3 cut(s)	346, 753, 774
BbrPI	CACGTG	1 cut(s)	347
Bbv12I	GWGCWC	2 cut(s)	346, 753
BbvI	GCAGC	3 cut(s)	199, 236, 245
BceAI	ACGGC	1 cut(s)	476
BcnI	CCSGG	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	31
BisI	GCNGC	3 cut(s)	213, 225, 234
BlsI	GCNGC	3 cut(s)	214, 226, 235
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	601
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	601
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	1 cut(s)	148
BseSI	GKGCMC	3 cut(s)	346, 753, 774
BseXI	GCAGC	3 cut(s)	199, 236, 245
BsiHKAI	GWGCWC	2 cut(s)	346, 753
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	346, 753, 774
Bsp143I	GATC	1 cut(s)	513
BspCNI	CTCAG	1 cut(s)	523
BspTI	CTTAAG	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	376
Bst4CI	ACNGT	3 cut(s)	529, 664, 697
BstAFI	CTTAAG	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	24, 335
BstDEI	CTNAG	4 cut(s)	104, 237, 477, 510
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	516
BstMBI	GATC	1 cut(s)	513
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 230, 233
BstNSI	RCATGY	2 cut(s)	601, 761
BstSCI	CCNGG	1 cut(s)	180
BstSLI	GKGCMC	3 cut(s)	346, 753, 774
BstV1I	GCAGC	3 cut(s)	199, 236, 245
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	2 cut(s)	328, 344
BtsIMutI	CAGTG	4 cut(s)	328, 344, 660, 702
Cac8I	GCNNGC	2 cut(s)	24, 335
Cfr13I	GGNCC	1 cut(s)	173
CviAII	CATG	3 cut(s)	598, 676, 758
DdeI	CTNAG	4 cut(s)	104, 237, 477, 510
DpnI	GATC	1 cut(s)	515
DpnII	GATC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	173
Eco72I	CACGTG	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	3 cut(s)	601, 679, 761
FaiI	YATR	8 cut(s)	28, 144, 153, 368, 404, 599, 677, 759
FatI	CATG	3 cut(s)	597, 675, 757
Fnu4HI	GCNGC	3 cut(s)	213, 225, 234
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	213, 225, 234
GluI	GCNGC	3 cut(s)	213, 225, 234
GsuI	CTGGAG	1 cut(s)	485
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	3 cut(s)	601, 679, 761
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	1 cut(s)	125
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	3 cut(s)	425, 492, 598
Hpy166II	GTNNAC	6 cut(s)	313, 322, 344, 385, 595, 751
Hpy188I	TCNGA	3 cut(s)	177, 456, 513
Hpy188III	TCNNGA	2 cut(s)	48, 64
Hpy8I	GTNNAC	6 cut(s)	313, 322, 344, 385, 595, 751
HpyAV	CCTTC	9 cut(s)	70, 85, 189, 274, 544, 583, 695, 802, 833
HpyCH4III	ACNGT	3 cut(s)	529, 664, 697
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	6 cut(s)	26, 333, 344, 601, 751, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 230, 233
HpyF3I	CTNAG	4 cut(s)	104, 237, 477, 510
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	3 cut(s)	601, 679, 761
KspAI	GTTAAC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	513
LpnPI	CCDG	5 cut(s)	161, 177, 195, 449, 729
Lsp1109I	GCAGC	3 cut(s)	199, 236, 245
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	187, 529
MalI	GATC	1 cut(s)	515
MboI	GATC	1 cut(s)	513
MboII	GAAGA	6 cut(s)	85, 100, 640, 643, 806, 826
MhlI	GDGCHC	3 cut(s)	346, 753, 774
MluCI	AATT	4 cut(s)	15, 120, 450, 567
MnlI	CCTC	6 cut(s)	335, 372, 388, 519, 784, 836
Mph1103I	ATGCAT	1 cut(s)	603
MroXI	GAANNNNTTC	2 cut(s)	124, 818
MseI	TTAA	6 cut(s)	18, 32, 321, 354, 494, 638
MslI	CAYNNNNRTG	1 cut(s)	756
MspCI	CTTAAG	1 cut(s)	31
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	182
Mva1269I	GAATGC	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	221, 230, 233
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	513
NlaIII	CATG	3 cut(s)	601, 679, 761
NsiI	ATGCAT	1 cut(s)	603
NspI	RCATGY	2 cut(s)	601, 761
PctI	GAATGC	1 cut(s)	108
PdmI	GAANNNNTTC	2 cut(s)	124, 818
PfeI	GAWTC	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	214, 226, 235
PmaCI	CACGTG	1 cut(s)	347
PmlI	CACGTG	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	347
PspCI	CACGTG	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	756
SaqAI	TTAA	6 cut(s)	18, 32, 321, 354, 494, 638
SatI	GCNGC	3 cut(s)	213, 225, 234
Sau3AI	GATC	1 cut(s)	513
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	3 cut(s)	346, 753, 774
SfaNI	GCATC	1 cut(s)	31
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	4 cut(s)	15, 120, 450, 567
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	3 cut(s)	529, 664, 697
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	4 cut(s)	438, 489, 711, 776
TasI	AATT	4 cut(s)	15, 120, 450, 567
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	6 cut(s)	18, 32, 321, 354, 494, 638
Tru9I	TTAA	6 cut(s)	18, 32, 321, 354, 494, 638
TscAI	CASTG	4 cut(s)	335, 344, 667, 702
TseI	GCWGC	3 cut(s)	212, 224, 233
TspDTI	ATGAA	4 cut(s)	101, 117, 282, 692
TspGWI	ACGGA	2 cut(s)	309, 589
TspRI	CASTG	4 cut(s)	335, 344, 667, 702
Van91I	CCANNNNNTGG	1 cut(s)	170
Vha464I	CTTAAG	1 cut(s)	31
VneI	GTGCAC	2 cut(s)	342, 749
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	450
XceI	RCATGY	2 cut(s)	601, 761
XmnI	GAANNNNTTC	2 cut(s)	124, 818
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.