Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013188

Physical Location & Seq

Genomic Coordinates Reverse (-)

16654043 .. 16656622

Gene Structure 2580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G108300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCAGCAAAAGATGGAGCTAAGGAGAAAGACAAAGACAAAGAAAAAGATGAAAAGAAAGAAAAGGAGAAAGATGGTGGAGTAATCAATGCTGTTTACAAAGTCAACCTGCACTGCCGGCAGTGTGGACGTGAGATCAAGAAGCCACTTATGGCTACCCCAGGGGTTCACAATGTAGAGGTAGATATGGAGAAAGGAGAGATAAAGGCAAAAGGCGTTTTCGACCCAGTACAAATTCAGAAACGGCTAGAGAAGCTTTGCAAGAAAAAGATTGAGTTGGTATCACCCAAAATTCAGATCAAGGAAACCCCCGTTATAGAGAAAAAAATAGTGAAGGAACCAAAAGAACCTATTTCACGGACAATATTGGTGAAGGTAAACATGCATTGCAACAAATGTGAGCAAGATCTGAAGAAGAAGTTAATAAAGAGAAAAGGTATTCACAATGTTAAAACTGACATGAAAGCACAAACTCTGACAGTGGAAGGAACAATCGAGCCAGAAAAACTAGTATCGTATTTACGAAAAAAGGTGCACAAACATGCAGAAATTGTGCCCCCAAAACCAGAGAAAAAGGAAGAAACAAAAGAGAAGGAGAAGGGTGCCTCAAAACCAGAAGAGAAAAAGGAAGAAACAAAAGAGAAGGAGAAGGGCGCCTCAAAACCAGCAGAGAAAAAGGAAGAAACAAAAGAGAAGGAGAATGGCGCCTCAAAACCAGCAGAGAAACAGGAGGAAAAGAAAGAGAAAGAGAAAGAGAAAGACAGTGGTGAGAAATCTTCTGAACCAATCACCAGGGTCGTAGAAGCTAAGGAAGATATGCAGGTGGTGGAGGTTAAACCAAAAGAGAGCAACGCTCCATATTTTATTCACTATGTCTATGCTCCACAAACGTTTAGTGATGAAAATCCAAATGCTTGTTATATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

310

Amino Acids

35.37

Weight (kDa)

9.16

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29000 AT1G29000
fragaria_vesca	FvH4_7g08060
malus_domestica	MD02G1236600.v1.1
prunus_persica	Prupe.2G108300_v2.0.a1 Prupe.2G108300_v2.0.a1
pyrus_communis	pycom02g19870
rosa_chinensis	RchiOBHm_Chr1g0341261
rosa_laevigata	RLG00000029076
rosa_multiflora	Rmu_sc0004092.1_g000045
rosa_roxburghii	Rroxscaffold_4G00311900
rosa_rugosa	Rorug01G0158300.1 Rorug01G0158400.1
rosa_samantha	Rh1AG172700 Rh1BG140800 Rh1CG160800 Rh1DG173000
rosa_wichuraiana	Rw1G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	811
Acc36I	ACCTGC	2 cut(s)	117, 811
AccB1I	GGYRCC	3 cut(s)	602, 653, 704
AclI	AACGTT	1 cut(s)	890
AcsI	RAATTY	2 cut(s)	234, 291
AcuI	CTGAAG	1 cut(s)	431
AcyI	GRCGYC	2 cut(s)	654, 705
AfaI	GTAC	1 cut(s)	231
AhlI	ACTAGT	1 cut(s)	508
AjiI	CACGTC	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	160, 791
AluBI	AGCT	3 cut(s)	20, 256, 806
AluI	AGCT	3 cut(s)	20, 256, 806
Alw21I	GWGCWC	1 cut(s)	537
Alw44I	GTGCAC	1 cut(s)	533
ApaLI	GTGCAC	1 cut(s)	533
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	234, 291
AspLEI	GCGC	2 cut(s)	656, 707
AsuHPI	GGTGA	4 cut(s)	276, 382, 779, 781
BaeGI	GKGCMC	2 cut(s)	537, 558
BanI	GGYRCC	3 cut(s)	602, 653, 704
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	8, 68
BceAI	ACGGC	1 cut(s)	260
BciT130I	CCWGG	2 cut(s)	162, 793
BcuI	ACTAGT	1 cut(s)	508
BfaI	CTAG	2 cut(s)	248, 509
BfoI	RGCGCY	2 cut(s)	657, 708
BfuAI	ACCTGC	2 cut(s)	117, 811
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	162, 793
BmgBI	CACGTC	1 cut(s)	131
BmiI	GGNNCC	4 cut(s)	339, 604, 655, 706
BmrFI	CCNGG	2 cut(s)	162, 793
BmrI	ACTGGG	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	838, 870
Bpu10I	CCTNAGC	2 cut(s)	21, 807
BsaBI	GATNNNNATC	1 cut(s)	903
BsaHI	GRCGYC	2 cut(s)	654, 705
BsaJI	CCNNGG	3 cut(s)	160, 161, 792
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	903
BseBI	CCWGG	2 cut(s)	162, 793
BseDI	CCNNGG	3 cut(s)	160, 161, 792
BseJI	GATNNNNATC	1 cut(s)	903
BseMI	GCAATG	1 cut(s)	385
BseNI	ACTGG	1 cut(s)	227
BseSI	GKGCMC	2 cut(s)	537, 558
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	95
BshNI	GGYRCC	3 cut(s)	602, 653, 704
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	537, 558
Bsp143I	GATC	3 cut(s)	135, 297, 406
BspLI	GGNNCC	4 cut(s)	339, 604, 655, 706
BspMI	ACCTGC	2 cut(s)	117, 811
BspT107I	GGYRCC	3 cut(s)	602, 653, 704
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	3 cut(s)	160, 161, 792
BssMI	GATC	3 cut(s)	135, 297, 406
BssNI	GRCGYC	2 cut(s)	654, 705
Bst2UI	CCWGG	2 cut(s)	162, 793
Bst4CI	ACNGT	2 cut(s)	481, 764
Bst6I	CTCTTC	1 cut(s)	612
BstACI	GRCGYC	2 cut(s)	654, 705
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	21, 807
BstH2I	RGCGCY	2 cut(s)	657, 708
BstHHI	GCGC	2 cut(s)	656, 707
BstKTI	GATC	3 cut(s)	138, 300, 409
BstMBI	GATC	3 cut(s)	135, 297, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 253
BstNI	CCWGG	2 cut(s)	162, 793
BstNSI	RCATGY	2 cut(s)	385, 545
BstSCI	CCNGG	2 cut(s)	160, 791
BstSLI	GKGCMC	2 cut(s)	537, 558
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BtrI	CACGTC	1 cut(s)	131
BtsI	GCAGTG	2 cut(s)	112, 128
BtsIMutI	CAGTG	4 cut(s)	112, 128, 486, 769
BveI	ACCTGC	2 cut(s)	117, 811
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	2 cut(s)	656, 707
Cfr10I	RCCGGY	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	3 cut(s)	382, 460, 542
CviJI	RGCY	7 cut(s)	20, 145, 155, 247, 256, 499, 806
CviKI_1	RGCY	7 cut(s)	20, 145, 155, 247, 256, 499, 806
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	2 cut(s)	21, 807
DinI	GGCGCC	2 cut(s)	655, 706
DpnI	GATC	3 cut(s)	137, 299, 408
DpnII	GATC	3 cut(s)	135, 297, 406
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Eco57I	CTGAAG	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	160, 791
EcoT22I	ATGCAT	1 cut(s)	387
EgeI	GGCGCC	2 cut(s)	655, 706
EheI	GGCGCC	2 cut(s)	655, 706
FaeI	CATG	3 cut(s)	385, 463, 545
FatI	CATG	3 cut(s)	381, 459, 541
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	248, 509
GlaI	GCGC	2 cut(s)	655, 706
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	2 cut(s)	657, 708
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	2 cut(s)	656, 707
Hin1I	GRCGYC	2 cut(s)	654, 705
Hin1II	CATG	3 cut(s)	385, 463, 545
Hin6I	GCGC	2 cut(s)	654, 705
HinP1I	GCGC	2 cut(s)	654, 705
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	254
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	4 cut(s)	276, 382, 779, 781
Hpy166II	GTNNAC	6 cut(s)	97, 106, 128, 169, 379, 535
Hpy188I	TCNGA	5 cut(s)	240, 297, 411, 477, 781
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	6 cut(s)	97, 106, 128, 169, 379, 535
HpyAV	CCTTC	8 cut(s)	328, 367, 479, 586, 592, 637, 643, 688
HpyCH4III	ACNGT	2 cut(s)	481, 764
HpyCH4IV	ACGT	2 cut(s)	130, 890
HpyCH4V	TGCA	7 cut(s)	112, 261, 385, 390, 535, 545, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 253
HpyF3I	CTNAG	2 cut(s)	21, 807
HpySE526I	ACGT	2 cut(s)	130, 890
Hsp92I	GRCGYC	2 cut(s)	654, 705
Hsp92II	CATG	3 cut(s)	385, 463, 545
HspAI	GCGC	2 cut(s)	654, 705
KasI	GGCGCC	2 cut(s)	653, 704
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	135, 297, 406
LmnI	GCTCC	3 cut(s)	17, 859, 886
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	2 cut(s)	248, 509
MaeII	ACGT	2 cut(s)	130, 890
MalI	GATC	3 cut(s)	137, 299, 408
MboI	GATC	3 cut(s)	135, 297, 406
MboII	GAAGA	8 cut(s)	424, 427, 590, 629, 641, 692, 768, 824
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	537, 558
MluCI	AATT	3 cut(s)	234, 291, 549
Mly113I	GGCGCC	2 cut(s)	654, 705
MnlI	CCTC	6 cut(s)	172, 616, 667, 718, 724, 823
Mph1103I	ATGCAT	1 cut(s)	387
MroNI	GCCGGC	1 cut(s)	117
MseI	TTAA	3 cut(s)	422, 450, 834
MslI	CAYNNNNRTG	1 cut(s)	540
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	2 cut(s)	162, 793
MvaI	CCWGG	2 cut(s)	162, 793
MwoI	GCNNNNNNNGC	2 cut(s)	118, 253
NaeI	GCCGGC	1 cut(s)	119
NarI	GGCGCC	2 cut(s)	654, 705
NdeII	GATC	3 cut(s)	135, 297, 406
NgoMIV	GCCGGC	1 cut(s)	117
NlaIII	CATG	3 cut(s)	385, 463, 545
NlaIV	GGNNCC	4 cut(s)	339, 604, 655, 706
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	2 cut(s)	385, 545
PaqCI	CACCTGC	1 cut(s)	811
PasI	CCCWGGG	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	7
PluTI	GGCGCC	2 cut(s)	657, 708
Psp1406I	AACGTT	1 cut(s)	890
Psp6I	CCWGG	2 cut(s)	160, 791
PspGI	CCWGG	2 cut(s)	160, 791
PspN4I	GGNNCC	4 cut(s)	339, 604, 655, 706
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	422, 450, 834
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	135, 297, 406
ScrFI	CCNGG	2 cut(s)	162, 793
SduI	GDGCHC	2 cut(s)	537, 558
SfoI	GGCGCC	2 cut(s)	655, 706
SmiMI	CAYNNNNRTG	1 cut(s)	540
SpeI	ACTAGT	1 cut(s)	508
Sse9I	AATT	3 cut(s)	234, 291, 549
SspDI	GGCGCC	2 cut(s)	653, 704
SspI	AATATT	1 cut(s)	366
SspMI	CTAG	2 cut(s)	248, 509
StyD4I	CCNGG	2 cut(s)	160, 791
TaaI	ACNGT	2 cut(s)	481, 764
TaiI	ACGT	2 cut(s)	133, 893
TaqI	TCGA	2 cut(s)	222, 495
TasI	AATT	3 cut(s)	234, 291, 549
TatI	WGTACW	1 cut(s)	229
Tru1I	TTAA	3 cut(s)	422, 450, 834
Tru9I	TTAA	3 cut(s)	422, 450, 834
TscAI	CASTG	4 cut(s)	119, 128, 486, 769
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	66, 476, 915
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	4 cut(s)	119, 128, 486, 769
VneI	GTGCAC	1 cut(s)	533
XapI	RAATTY	2 cut(s)	234, 291
XceI	RCATGY	2 cut(s)	385, 545
XspI	CTAG	2 cut(s)	248, 509
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.