Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013188

Physical Location & Seq

Genomic Coordinates Forward (+)

7994451 .. 7996369

Gene Structure 1919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCAGCTAAAGAAGGAGCTAAGGAGAAAGATCACAAGGAAGACAAAGCAAAAGATGAAAAGAAAGCTAAGGAGAAAGATGGAGTAATCACTGCTGTTTATAAGGTTAACCTGCACTGCCCACAGTGTGCACGAGAGATTAAGAAGCCTCTTATATCTATCCAAGGGGTTCACAACGTGGAGGTTGAAAGGGAGAAAGGTGAAATCAAAGTGAGAGGCGATTTCGACCCGACAAAGATACAGAAACGGCTTGAGAAACTCTGTAAGAAAAAGGTTGAGCTAGTGTCACCCAAGGTCCAGATCAAGGAAAGCACCACAACTGAGACAATAGTAGTGAAGGAATCCAAAACCAAAGAAGTAGTGGCAATTTCACGGACAACATTAGTGAAGGTTCACATGCATTGCCACAAATGTGAGCAAGATCTGAAGAAGAAGTTGTTAACGAACAAAGGTGTTCACAATGTTAAAACGGACATGAAAGCACAAACCCTAGCAGTGGAAGGAACAATTGATCCTGAAAAACTAGTATCGTATTTGCGCAAAAAGGTACACAAGCACGCAGAGATTATACCCCCAAAACAAGAGAAGAAGGATGGGACGAAAGAAAAGGAGAAGAGTTCCTCAAAACCCCCAGAGAAAAAGGACGAAAAGAAAGAGAAAGAGAGTGGTAAATCTACTGAAATAGTTACCAAGGTTGTAGAAGCTAAGGAAGAGATAAAGGTGGTGGAGGTTAAGACAAAAGAGGGGGGTGCTCCTTATTTCATTCACTATGTCTATGCTCCACAAACATTTAGTGATGAAAATCCAAATGCTTGCTCTATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

276

Amino Acids

31.14

Weight (kDa)

9.34

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	34 - 90	2.4e-11	Heavy-metal-associated domain
HMA	PF00403	130 - 185	1.3e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29000 AT1G29000
fragaria_vesca	FvH4_7g08060
malus_domestica	MD02G1236600.v1.1
prunus_persica	Prupe.2G108300_v2.0.a1 Prupe.2G108300_v2.0.a1
pyrus_communis	pycom02g19870
rosa_chinensis	RchiOBHm_Chr1g0341261
rosa_laevigata	RLG00000029076
rosa_multiflora	Rmu_sc0004092.1_g000045
rosa_roxburghii	Rroxscaffold_4G00311900
rosa_rugosa	Rorug01G0158300.1 Rorug01G0158400.1
rosa_samantha	Rh1AG172700 Rh1BG140800 Rh1CG160800 Rh1DG173000
rosa_wichuraiana	Rw1G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
Acc16I	TGCGCA	1 cut(s)	539
Acc36I	ACCTGC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	446
AdeI	CACNNNGTG	2 cut(s)	128, 178
AfaI	GTAC	1 cut(s)	549
AfiI	CCNNNNNNNGG	2 cut(s)	304, 496
AgsI	TTSAA	1 cut(s)	188
AhlI	ACTAGT	1 cut(s)	523
AleI	CACNNNNGTG	1 cut(s)	411
AloI	GAACNNNNNNTCC	2 cut(s)	496, 528
AluBI	AGCT	5 cut(s)	8, 20, 68, 280, 704
AluI	AGCT	5 cut(s)	8, 20, 68, 280, 704
Alw21I	GWGCWC	2 cut(s)	133, 754
Alw26I	GTCTC	1 cut(s)	317
Alw44I	GTGCAC	1 cut(s)	129
AlwI	GGATC	1 cut(s)	506
ApaLI	GTGCAC	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	212, 279
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	2 cut(s)	133, 754
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	74, 587
BceAI	ACGGC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	317
BcuI	ACTAGT	1 cut(s)	523
BfaI	CTAG	3 cut(s)	281, 491, 524
BfuAI	ACCTGC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	48
Bpu10I	CCTNAGC	3 cut(s)	21, 69, 705
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	801
BsaJI	CCNNGG	3 cut(s)	163, 291, 690
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 496
Bse3DI	GCAATG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	163, 291, 690
BseGI	GGATG	1 cut(s)	598
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	2 cut(s)	304, 496
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	98
BsiHKAI	GWGCWC	2 cut(s)	133, 754
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	2 cut(s)	304, 496
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	133, 754
Bsp143I	GATC	4 cut(s)	31, 300, 421, 511
BspCNI	CTCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	163, 291, 690
BssMI	GATC	4 cut(s)	31, 300, 421, 511
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	3 cut(s)	163, 291, 690
Bst2BI	CACGAG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	2 cut(s)	608, 705
BstC8I	GCNNGC	2 cut(s)	558, 814
BstDEI	CTNAG	4 cut(s)	21, 69, 321, 705
BstF5I	GGATG	1 cut(s)	598
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	4 cut(s)	34, 303, 424, 514
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	4 cut(s)	31, 300, 421, 511
BstNSI	RCATGY	1 cut(s)	400
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	598
BtsI	GCAGTG	3 cut(s)	90, 115, 501
BtsIMutI	CAGTG	4 cut(s)	90, 115, 131, 501
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	558, 814
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	548
CviAII	CATG	2 cut(s)	397, 475
CviJI	RGCY	7 cut(s)	8, 20, 68, 148, 250, 280, 704
CviKI_1	RGCY	7 cut(s)	8, 20, 68, 148, 250, 280, 704
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	4 cut(s)	21, 69, 321, 705
DpnI	GATC	4 cut(s)	33, 302, 423, 513
DpnII	GATC	4 cut(s)	31, 300, 421, 511
DraIII	CACNNNGTG	2 cut(s)	128, 178
Eam1104I	CTCTTC	2 cut(s)	608, 705
EarI	CTCTTC	2 cut(s)	608, 705
Eco130I	CCWWGG	3 cut(s)	163, 291, 690
Eco47I	GGWCC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	446
EcoT14I	CCWWGG	3 cut(s)	163, 291, 690
EcoT22I	ATGCAT	1 cut(s)	402
ErhI	CCWWGG	3 cut(s)	163, 291, 690
FaeI	CATG	2 cut(s)	400, 478
FaiI	YATR	8 cut(s)	102, 155, 398, 476, 569, 771, 777, 821
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	2 cut(s)	396, 474
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	281, 491, 524
FspI	TGCGCA	1 cut(s)	539
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	2 cut(s)	400, 478
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	2 cut(s)	109, 441
HindII	GTYRAC	2 cut(s)	109, 441
HinfI	GANTC	1 cut(s)	341
HpaI	GTTAAC	2 cut(s)	109, 441
HphI	GGTGA	2 cut(s)	212, 279
Hpy166II	GTNNAC	7 cut(s)	109, 131, 172, 394, 441, 457, 550
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	2 cut(s)	298, 515
Hpy8I	GTNNAC	7 cut(s)	109, 131, 172, 394, 441, 457, 550
HpyAV	CCTTC	5 cut(s)	8, 331, 382, 494, 583
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	115, 131, 400
HpyF3I	CTNAG	4 cut(s)	21, 69, 321, 705
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	400, 478
HspAI	GCGC	1 cut(s)	538
KspAI	GTTAAC	2 cut(s)	109, 441
Kzo9I	GATC	4 cut(s)	31, 300, 421, 511
LmnI	GCTCC	3 cut(s)	17, 757, 784
LpnPI	CCDG	4 cut(s)	125, 311, 528, 645
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	3 cut(s)	281, 491, 524
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	285, 685
MalI	GATC	4 cut(s)	33, 302, 423, 513
MboI	GATC	4 cut(s)	31, 300, 421, 511
MboII	GAAGA	6 cut(s)	53, 439, 442, 598, 625, 722
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	133, 754
MluCI	AATT	2 cut(s)	366, 507
MnlI	CCTC	6 cut(s)	159, 175, 209, 631, 721, 736
Mph1103I	ATGCAT	1 cut(s)	402
MseI	TTAA	5 cut(s)	108, 141, 440, 465, 732
MslI	CAYNNNNRTG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	507
NdeII	GATC	4 cut(s)	31, 300, 421, 511
NlaIII	CATG	2 cut(s)	400, 478
NmuCI	GTSAC	1 cut(s)	285
NsbI	TGCGCA	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	402
NspI	RCATGY	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	7
PsiI	TTATAA	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	5 cut(s)	108, 141, 440, 465, 732
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	31, 300, 421, 511
Sau96I	GGNCC	1 cut(s)	295
SduI	GDGCHC	2 cut(s)	133, 754
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SpeI	ACTAGT	1 cut(s)	523
Sse9I	AATT	2 cut(s)	366, 507
SspMI	CTAG	3 cut(s)	281, 491, 524
StyI	CCWWGG	3 cut(s)	163, 291, 690
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	366, 507
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	5 cut(s)	108, 141, 440, 465, 732
Tru9I	TTAA	5 cut(s)	108, 141, 440, 465, 732
TscAI	CASTG	4 cut(s)	97, 122, 131, 501
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	4 cut(s)	72, 491, 751, 813
TspGWI	ACGGA	2 cut(s)	388, 485
TspRI	CASTG	4 cut(s)	97, 122, 131, 501
VneI	GTGCAC	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	295
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XspI	CTAG	3 cut(s)	281, 491, 524
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.