Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0013188

Physical Location & Seq

Genomic Coordinates Reverse (-)

32417627 .. 32419099

Gene Structure 1473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029076

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCAGCAAAAGAAGAAGCTAAGGAGAAAGATCGGAAAGACGACAAAGCAAAAGATGAAAAGAAAGCCAAGGAGAAAGATGGATTAATCACTGCTGTTTATAAGGTTAACCTGCACTGCCCACAGTGTGCACGTGAGATCAAGAAGCCTCTTATTGCTACCCAAGGGGTTCACAATGTGGAGGTTGAAAGGGAAAAAGGTGAAATCAAGGTAAAAGGCAATTTCGCCCCGACAAAGATACAGAAACGGCTTGAGAAACTTTGTAAGAAAAAGATTGAGTTAGTGTCACCCAAGGTCCAGATCAAGGAAAGCATCACAACTGAGAAAAAAGTAGTGAAGGAAACCAAAGAAGTGGCAATTTCAAGGACAACATTAGTGAAGGTTCACATGCATTGCCACAAATGTGAGCAAGATCTGAAGAAGAAGTTGTTAACGAATAAAGGTGTTCACAATGTTAAAACGGACATGAAAGCACAAACCCTAGCAGTGGAAGGAACAATTGATCCTGAAAAACTAATATCGTACTTGCGCAAAAAGGTGCACAAACACGCAGAGATTATACCCCCAAAACAAGAGAAGAAGGATGAGACGCAACAAAAGGAGAAGAGTTCCTCAAAACCCCCGAGTTCCTCAAAACCCCCAGAGAAAAAGGAGGAAAAGAAAGAGAAGGAGAAGGAGAGTGGTAAATCTACTGAAATAGATACCAAGGTTGTAGACGTTAAGGAAGAGATAAAGGTGGTGGAGGTTAAGACAAAAGAGGGGAGTGCTCCTTATTTCATTCACTATGTCTATGCTCCACAAATATTTAGTGATGAAAATCCAAATGCTTGCTCTATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

281

Amino Acids

31.9

Weight (kDa)

9.39

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	34 - 90	4.3e-10	Heavy-metal-associated domain
HMA	PF00403	127 - 182	1.3e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29000 AT1G29000
fragaria_vesca	FvH4_7g08060
malus_domestica	MD02G1236600.v1.1
prunus_persica	Prupe.2G108300_v2.0.a1 Prupe.2G108300_v2.0.a1
pyrus_communis	pycom02g19870
rosa_chinensis	RchiOBHm_Chr1g0341261
rosa_laevigata	RLG00000029076
rosa_multiflora	Rmu_sc0004092.1_g000045
rosa_roxburghii	Rroxscaffold_4G00311900
rosa_rugosa	Rorug01G0158300.1 Rorug01G0158400.1
rosa_samantha	Rh1AG172700 Rh1BG140800 Rh1CG160800 Rh1DG173000
rosa_wichuraiana	Rw1G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
Acc16I	TGCGCA	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	714
AclWI	GGATC	1 cut(s)	497
AcuI	CTGAAG	1 cut(s)	437
AcvI	CACGTG	1 cut(s)	134
AdeI	CACNNNGTG	2 cut(s)	128, 178
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	2 cut(s)	304, 487
AgsI	TTSAA	2 cut(s)	188, 363
AleI	CACNNNNGTG	1 cut(s)	402
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	3 cut(s)	133, 543, 769
Alw26I	GTCTC	1 cut(s)	581
Alw44I	GTGCAC	2 cut(s)	129, 539
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	622
ApaLI	GTGCAC	2 cut(s)	129, 539
ApeKI	GCWGC	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	212, 279
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	2 cut(s)	133, 543
BaeI	ACNNNNGTAYC	2 cut(s)	693, 726
BbrPI	CACGTG	1 cut(s)	134
Bbv12I	GWGCWC	3 cut(s)	133, 543, 769
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	295
BmsI	GCATC	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	816
BsaJI	CCNNGG	4 cut(s)	69, 163, 291, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 487
Bse3DI	GCAATG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	816
BseDI	CCNNGG	4 cut(s)	69, 163, 291, 705
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	816
BseLI	CCNNNNNNNGG	2 cut(s)	304, 487
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	312
BseSI	GKGCMC	2 cut(s)	133, 543
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	98
BsiHKAI	GWGCWC	3 cut(s)	133, 543, 769
BsiHKCI	CYCGRG	1 cut(s)	622
BslI	CCNNNNNNNGG	2 cut(s)	304, 487
BsmAI	GTCTC	1 cut(s)	581
BsmBI	CGTCTC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	3 cut(s)	133, 543, 769
Bsp143I	GATC	5 cut(s)	31, 138, 300, 412, 502
BspCNI	CTCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	391
BssECI	CCNNGG	4 cut(s)	69, 163, 291, 705
BssMI	GATC	5 cut(s)	31, 138, 300, 412, 502
BssT1I	CCWWGG	4 cut(s)	69, 163, 291, 705
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	2 cut(s)	599, 720
BstBAI	YACGTR	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	829
BstDEI	CTNAG	2 cut(s)	21, 321
BstF5I	GGATG	1 cut(s)	589
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	5 cut(s)	34, 141, 303, 415, 505
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	5 cut(s)	31, 138, 300, 412, 502
BstNSI	RCATGY	1 cut(s)	391
BstSLI	GKGCMC	2 cut(s)	133, 543
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	412
BstXI	CCANNNNNNTGG	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	3 cut(s)	90, 115, 492
BtsIMutI	CAGTG	4 cut(s)	90, 115, 131, 492
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	829
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	2 cut(s)	388, 466
CviJI	RGCY	4 cut(s)	20, 68, 148, 250
CviKI_1	RGCY	4 cut(s)	20, 68, 148, 250
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	2 cut(s)	21, 321
DpnI	GATC	5 cut(s)	33, 140, 302, 414, 504
DpnII	GATC	5 cut(s)	31, 138, 300, 412, 502
DraIII	CACNNNGTG	2 cut(s)	128, 178
Eam1104I	CTCTTC	2 cut(s)	599, 720
EarI	CTCTTC	2 cut(s)	599, 720
Eco130I	CCWWGG	4 cut(s)	69, 163, 291, 705
Eco47I	GGWCC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	437
Eco72I	CACGTG	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	622
EcoT14I	CCWWGG	4 cut(s)	69, 163, 291, 705
EcoT22I	ATGCAT	1 cut(s)	393
ErhI	CCWWGG	4 cut(s)	69, 163, 291, 705
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	2 cut(s)	391, 469
FaiI	YATR	7 cut(s)	102, 389, 467, 560, 786, 792, 836
FatI	CATG	2 cut(s)	387, 465
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	596
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	482
FspI	TGCGCA	1 cut(s)	530
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	1 cut(s)	6
HgaI	GACGC	1 cut(s)	598
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	2 cut(s)	391, 469
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	2 cut(s)	109, 432
HindII	GTYRAC	2 cut(s)	109, 432
HpaI	GTTAAC	2 cut(s)	109, 432
HphI	GGTGA	2 cut(s)	212, 279
Hpy166II	GTNNAC	8 cut(s)	109, 131, 172, 385, 432, 448, 541, 715
Hpy188I	TCNGA	2 cut(s)	36, 417
Hpy188III	TCNNGA	3 cut(s)	142, 298, 506
Hpy8I	GTNNAC	8 cut(s)	109, 131, 172, 385, 432, 448, 541, 715
HpyAV	CCTTC	6 cut(s)	331, 373, 485, 574, 661, 667
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	2 cut(s)	133, 717
HpyCH4V	TGCA	4 cut(s)	115, 131, 391, 541
HpyF3I	CTNAG	2 cut(s)	21, 321
HpySE526I	ACGT	2 cut(s)	133, 717
Hsp92II	CATG	2 cut(s)	391, 469
HspAI	GCGC	1 cut(s)	529
KspAI	GTTAAC	2 cut(s)	109, 432
Kzo9I	GATC	5 cut(s)	31, 138, 300, 412, 502
LmnI	GCTCC	2 cut(s)	772, 799
LpnPI	CCDG	4 cut(s)	125, 311, 519, 654
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	2 cut(s)	133, 717
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	5 cut(s)	33, 140, 302, 414, 504
MboI	GATC	5 cut(s)	31, 138, 300, 412, 502
MboII	GAAGA	6 cut(s)	26, 430, 433, 589, 616, 737
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	3 cut(s)	133, 543, 769
MluCI	AATT	3 cut(s)	220, 357, 498
MnlI	CCTC	7 cut(s)	159, 175, 622, 640, 646, 736, 751
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	6 cut(s)	86, 108, 431, 456, 720, 747
MslI	CAYNNNNRTG	1 cut(s)	402
MunI	CAATTG	1 cut(s)	498
NdeII	GATC	5 cut(s)	31, 138, 300, 412, 502
NlaIII	CATG	2 cut(s)	391, 469
NmuCI	GTSAC	1 cut(s)	285
NsbI	TGCGCA	1 cut(s)	530
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	391
OliI	CACNNNNGTG	1 cut(s)	402
PkrI	GCNGC	1 cut(s)	7
PmaCI	CACGTG	1 cut(s)	134
PmlI	CACGTG	1 cut(s)	134
Ppu21I	YACGTR	1 cut(s)	134
PshBI	ATTAAT	1 cut(s)	86
PsiI	TTATAA	1 cut(s)	102
PspCI	CACGTG	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	6 cut(s)	86, 108, 431, 456, 720, 747
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	5 cut(s)	31, 138, 300, 412, 502
Sau96I	GGNCC	1 cut(s)	295
SduI	GDGCHC	3 cut(s)	133, 543, 769
SfaNI	GCATC	1 cut(s)	321
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	220, 357, 498
SspI	AATATT	1 cut(s)	804
SspMI	CTAG	1 cut(s)	482
StyI	CCWWGG	4 cut(s)	69, 163, 291, 705
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	2 cut(s)	136, 720
TasI	AATT	3 cut(s)	220, 357, 498
Tru1I	TTAA	6 cut(s)	86, 108, 431, 456, 720, 747
Tru9I	TTAA	6 cut(s)	86, 108, 431, 456, 720, 747
TscAI	CASTG	4 cut(s)	97, 122, 131, 492
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	4 cut(s)	72, 482, 766, 828
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	4 cut(s)	97, 122, 131, 492
VneI	GTGCAC	2 cut(s)	129, 539
VpaK11BI	GGWCC	1 cut(s)	295
VspI	ATTAAT	1 cut(s)	86
XceI	RCATGY	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.