AT1G30540

BadF/BadG/BcrA/BcrD ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010229
Physical Location & Seq
Reverse (-)
10816616 .. 10819419
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30540.1

Sequence Viewer

Length: 1056 bp
ATGAGGAATCCACATAGCAATGGAAACCTTCGGAAGCTTGAAGCTGATGGAGGAGGAGAAGCCACGGAGGAGAACGGTTTCGTAAACGGCGTAATCTTGGGCCTTGACGGTGGCGCCACCTCAACGGTATGCGTTTGCGTTCCATTTTTTTCGTTTGGTGAACGTTTCCCGGATCCTCTTCCGATCCTCGGTCGTGCCGTCGCCGGTTGCACCAATCGCAACAGCGTTGGAGAAACTGCAGCAAGGGATTCACTAGAGCAAGTGATTTCTGAGGCACTTGTACAGTCTGGTTTTGATAAATCAGATGTTCGCGGTGTATGCTTAGGTGTTTCAGGTGTTAATCATCCCTCAGACCAGGAAAAGATAGAAAATTGGATAAGGGACATGTTTCCTAGTCATGTCAAGGTATATGTTCAGAATGATGCTATAGTGGCTTTAGCTAGTGGAACCATGGGAAAGCTCCATGGCTGCGTTCTAATCGCTGGTACAGGATGTATAGCTTATGGCTTTGATGAAGATGGCAAGGAGGCTAGGGCATCTGGTGGTGGACCAATCTTAGGTGATTGGGGAAGTGGCTATGGAATTGCTGCACAGGCCTTAACGGCGGTGATTAGAGCTCATGATGGTCGTGGCCCACAAACGATGCTTACAAGTACCATCTTAAAAGCACTTGGACTCTCCTCTCCAGACGAACTCATCGGTTGGACTTACGCTGATCCATCTTGGGCACGTATCGCTGCTCTTGTTCCTCAAGTAGTCTCTTGTGCAGAAGCTGGTGATGAAATTTCAGATAAGATCTTGGTTGATGCAGCTGAGGATTTAGCTCTCAGTGTGAAAGCTGTTGTACAGAGACTTGGTTTATGTGGCAAAGATGGGACAGCTTCTTTCCCGGTTGTAATGGTAGGCGGAGTCCTTAACGCTAATCAGAAATGGGACATTGGAAAAGAAGTCTCTAAGCGCATTAACAGATACTTTCCAGGGGCTCAAACTATCATACCAAAGGTAGAGCCAGCTGTTGGAGCAGCATTGTTGGCCATGAACTTCTTATCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BcrAD_BadFG

Protein Analysis

351

Amino Acids

36.61

Weight (kDa)

5.05

Isoelectric Point (pI)

24.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BcrAD_BadFG PF01869 33 - 345 4.7e-78 BadF/BadG/BcrA/BcrD ATPase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AccB7I CCANNNNNTGG 1 cut(s) 1016
AccII CGCG 1 cut(s) 312
AciI CCGC 3 cut(s) 312, 605, 906
AclI AACGTT 1 cut(s) 163
AclWI GGATC 4 cut(s) 167, 178, 180, 710
AcoI YGGCCR 1 cut(s) 1032
AcsI RAATTY 1 cut(s) 783
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 4 cut(s) 282, 487, 655, 846
AfiI CCNNNNNNNGG 3 cut(s) 188, 557, 1016
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 2 cut(s) 354, 976
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 3 cut(s) 763, 844, 955
AlwI GGATC 4 cut(s) 167, 178, 180, 710
AlwNI CAGNNNCTG 1 cut(s) 773
AoxI GGCC 4 cut(s) 100, 594, 631, 1032
ApeKI GCWGC 6 cut(s) 239, 468, 587, 737, 809, 1022
ApoI RAATTY 1 cut(s) 783
Asp700I GAANNNNTTC 1 cut(s) 77
AspLEI GCGC 2 cut(s) 116, 960
AspS9I GGNCC 3 cut(s) 100, 548, 632
AsuC2I CCSGG 2 cut(s) 170, 890
AsuHPI GGTGA 4 cut(s) 170, 572, 619, 788
AvaII GGWCC 1 cut(s) 548
BaeGI GKGCMC 1 cut(s) 730
BalI TGGCCA 1 cut(s) 1034
BamHI GGATCC 1 cut(s) 172
BanI GGYRCC 1 cut(s) 113
BanII GRGCYC 2 cut(s) 619, 985
Bbv12I GWGCWC 1 cut(s) 619
BbvCI CCTCAGC 1 cut(s) 813
BbvI GCAGC 6 cut(s) 251, 455, 574, 724, 821, 1034
BccI CCATC 6 cut(s) 41, 512, 617, 665, 727, 866
BceAI ACGGC 3 cut(s) 103, 182, 618
BciT130I CCWGG 2 cut(s) 356, 978
BcnI CCSGG 2 cut(s) 170, 890
BcoDI GTCTC 3 cut(s) 763, 844, 955
BfaI CTAG 4 cut(s) 254, 393, 441, 531
BfmI CTRYAG 2 cut(s) 237, 426
BfoI RGCGCY 1 cut(s) 117
BglI GCCNNNNNGGC 1 cut(s) 602
BglII AGATCT 1 cut(s) 795
BisI GCNGC 6 cut(s) 240, 469, 588, 738, 810, 1023
BlsI GCNGC 6 cut(s) 241, 470, 589, 739, 811, 1024
Bme1390I CCNGG 4 cut(s) 170, 356, 890, 978
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 3 cut(s) 100, 548, 632
BmiI GGNNCC 3 cut(s) 115, 174, 448
BmrFI CCNGG 4 cut(s) 170, 356, 890, 978
BmsI GCATC 4 cut(s) 412, 545, 633, 796
BpmI CTGGAG 1 cut(s) 669
Bpu10I CCTNAGC 2 cut(s) 322, 813
BpuEI CTTGAG 1 cut(s) 735
BpuMI CCSGG 2 cut(s) 170, 890
BsaAI YACGTR 1 cut(s) 731
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 5 cut(s) 63, 187, 450, 463, 977
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 557, 1016
Bse118I RCCGGY 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 2 cut(s) 356, 978
BseDI CCNNGG 5 cut(s) 63, 187, 450, 463, 977
BseGI GGATG 2 cut(s) 343, 497
BseLI CCNNNNNNNGG 3 cut(s) 188, 557, 1016
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 4 cut(s) 261, 363, 804, 841
BseRI GAGGAG 4 cut(s) 66, 69, 83, 670
BseSI GKGCMC 1 cut(s) 730
BseXI GCAGC 6 cut(s) 251, 455, 574, 724, 821, 1034
BsgI GTGCAG 2 cut(s) 573, 786
Bsh1236I CGCG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 4 cut(s) 102, 596, 633, 1034
BshNI GGYRCC 1 cut(s) 113
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 619
BsiSI CCGG 3 cut(s) 170, 204, 890
BslFI GGGAC 3 cut(s) 395, 889, 947
BslI CCNNNNNNNGG 3 cut(s) 188, 557, 1016
BsmAI GTCTC 3 cut(s) 763, 844, 955
BsmFI GGGAC 3 cut(s) 395, 889, 947
BsnI GGCC 4 cut(s) 102, 596, 633, 1034
Bsp1286I GDGCHC 3 cut(s) 619, 730, 985
Bsp1407I TGTACA 2 cut(s) 280, 844
Bsp143I GATC 4 cut(s) 172, 183, 715, 795
Bsp19I CCATGG 2 cut(s) 450, 463
BspACI CCGC 3 cut(s) 312, 605, 906
BspANI GGCC 4 cut(s) 102, 596, 633, 1034
BspCNI CTCAG 4 cut(s) 262, 362, 805, 840
BspFNI CGCG 1 cut(s) 312
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 3 cut(s) 115, 174, 448
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 4 cut(s) 167, 178, 180, 710
BspT107I GGYRCC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 203
BsrGI TGTACA 2 cut(s) 280, 844
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 5 cut(s) 63, 187, 450, 463, 977
BssMI GATC 4 cut(s) 172, 183, 715, 795
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 2 cut(s) 450, 463
Bst2UI CCWGG 2 cut(s) 356, 978
Bst4CI ACNGT 4 cut(s) 77, 110, 127, 285
Bst6I CTCTTC 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 114
BstAUI TGTACA 2 cut(s) 280, 844
BstBAI YACGTR 1 cut(s) 731
BstC8I GCNNGC 1 cut(s) 1011
BstDEI CTNAG 7 cut(s) 270, 322, 349, 556, 813, 827, 954
BstDSI CCRYGG 3 cut(s) 63, 450, 463
BstF5I GGATG 2 cut(s) 343, 497
BstFNI CGCG 1 cut(s) 312
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 2 cut(s) 116, 960
BstKTI GATC 4 cut(s) 175, 186, 718, 798
BstMAI GTCTC 3 cut(s) 763, 844, 955
BstMBI GATC 4 cut(s) 172, 183, 715, 795
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 8 cut(s) 216, 318, 431, 593, 602, 734, 1019, 1031
BstNI CCWGG 2 cut(s) 356, 978
BstNSI RCATGY 1 cut(s) 388
BstSCI CCNGG 4 cut(s) 168, 354, 888, 976
BstSFI CTRYAG 2 cut(s) 237, 426
BstSLI GKGCMC 1 cut(s) 730
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 6 cut(s) 251, 455, 574, 724, 821, 1034
BstX2I RGATCY 2 cut(s) 172, 795
BstYI RGATCY 2 cut(s) 172, 795
BsuRI GGCC 4 cut(s) 102, 596, 633, 1034
BtgI CCRYGG 3 cut(s) 63, 450, 463
BtsCI GGATG 2 cut(s) 343, 497
BtsIMutI CAGTG 1 cut(s) 835
Cac8I GCNNGC 1 cut(s) 1011
CaiI CAGNNNCTG 1 cut(s) 773
CciI TCATGA 1 cut(s) 619
CfoI GCGC 2 cut(s) 116, 960
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 100, 548, 632
Csp6I GTAC 4 cut(s) 281, 486, 654, 845
CviAII CATG 6 cut(s) 385, 398, 451, 464, 620, 1036
CviQI GTAC 4 cut(s) 281, 486, 654, 845
DdeI CTNAG 7 cut(s) 270, 322, 349, 556, 813, 827, 954
DinI GGCGCC 1 cut(s) 115
DpnI GATC 4 cut(s) 174, 185, 717, 797
DpnII GATC 4 cut(s) 172, 183, 715, 795
EaeI YGGCCR 1 cut(s) 1032
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EciI GGCGGA 1 cut(s) 921
Ecl136II GAGCTC 1 cut(s) 617
Eco130I CCWWGG 2 cut(s) 450, 463
Eco147I AGGCCT 1 cut(s) 596
Eco24I GRGCYC 2 cut(s) 619, 985
Eco47I GGWCC 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 617
EcoICRI GAGCTC 1 cut(s) 617
EcoRII CCWGG 2 cut(s) 354, 976
EcoT14I CCWWGG 2 cut(s) 450, 463
EcoT38I GRGCYC 2 cut(s) 619, 985
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 2 cut(s) 450, 463
FaeI CATG 6 cut(s) 388, 401, 454, 467, 623, 1039
FaqI GGGAC 3 cut(s) 395, 889, 947
FatI CATG 6 cut(s) 384, 397, 450, 463, 619, 1035
Fnu4HI GCNGC 6 cut(s) 240, 469, 588, 738, 810, 1023
FokI GGATG 2 cut(s) 330, 504
FriOI GRGCYC 2 cut(s) 619, 985
Fsp4HI GCNGC 6 cut(s) 240, 469, 588, 738, 810, 1023
FspBI CTAG 4 cut(s) 254, 393, 441, 531
GlaI GCGC 2 cut(s) 115, 959
GluI GCNGC 6 cut(s) 240, 469, 588, 738, 810, 1023
GsuI CTGGAG 1 cut(s) 669
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 4 cut(s) 102, 596, 633, 1034
HapII CCGG 3 cut(s) 170, 204, 890
HhaI GCGC 2 cut(s) 116, 960
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 6 cut(s) 388, 401, 454, 467, 623, 1039
Hin6I GCGC 2 cut(s) 114, 958
HinP1I GCGC 2 cut(s) 114, 958
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 4 cut(s) 7, 248, 675, 909
HpaII CCGG 3 cut(s) 170, 204, 890
HphI GGTGA 4 cut(s) 170, 572, 619, 788
Hpy166II GTNNAC 3 cut(s) 85, 161, 548
Hpy188I TCNGA 8 cut(s) 33, 183, 271, 304, 352, 417, 790, 927
Hpy188III TCNNGA 2 cut(s) 620, 686
Hpy8I GTNNAC 3 cut(s) 85, 161, 548
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 4 cut(s) 77, 110, 127, 285
HpyCH4IV ACGT 2 cut(s) 163, 730
HpyCH4V TGCA 5 cut(s) 210, 239, 590, 767, 809
HpyF10VI GCNNNNNNNGC 8 cut(s) 216, 318, 431, 593, 602, 734, 1019, 1031
HpyF3I CTNAG 7 cut(s) 270, 322, 349, 556, 813, 827, 954
HpySE526I ACGT 2 cut(s) 163, 730
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 6 cut(s) 388, 401, 454, 467, 623, 1039
HspAI GCGC 2 cut(s) 114, 958
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 4 cut(s) 172, 183, 715, 795
LmnI GCTCC 2 cut(s) 465, 1019
Lsp1109I GCAGC 6 cut(s) 251, 455, 574, 724, 821, 1034
LweI GCATC 4 cut(s) 412, 545, 633, 796
MaeI CTAG 4 cut(s) 254, 393, 441, 531
MaeII ACGT 2 cut(s) 163, 730
MalI GATC 4 cut(s) 174, 185, 717, 797
MboI GATC 4 cut(s) 172, 183, 715, 795
MboII GAAGA 2 cut(s) 170, 527
MflI RGATCY 2 cut(s) 172, 795
MhlI GDGCHC 3 cut(s) 619, 730, 985
MlsI TGGCCA 1 cut(s) 1034
MluCI AATT 3 cut(s) 370, 582, 783
MluNI TGGCCA 1 cut(s) 1034
Mly113I GGCGCC 1 cut(s) 114
MlyI GAGTC 2 cut(s) 669, 918
MmeI TCCRAC 3 cut(s) 208, 683, 997
Mox20I TGGCCA 1 cut(s) 1034
MroXI GAANNNNTTC 1 cut(s) 77
MscI TGGCCA 1 cut(s) 1034
MseI TTAA 6 cut(s) 339, 599, 662, 915, 963, 1054
MslI CAYNNNNRTG 1 cut(s) 18
Msp20I TGGCCA 1 cut(s) 1034
MspA1I CMGCKG 2 cut(s) 812, 1013
MspI CCGG 3 cut(s) 170, 204, 890
MspR9I CCNGG 4 cut(s) 170, 356, 890, 978
MvaI CCWGG 2 cut(s) 356, 978
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 8 cut(s) 216, 318, 431, 593, 602, 734, 1019, 1031
NarI GGCGCC 1 cut(s) 114
NciI CCSGG 2 cut(s) 170, 890
NcoI CCATGG 2 cut(s) 450, 463
NdeII GATC 4 cut(s) 172, 183, 715, 795
NlaIII CATG 6 cut(s) 388, 401, 454, 467, 623, 1039
NlaIV GGNNCC 3 cut(s) 115, 174, 448
NspI RCATGY 1 cut(s) 388
PagI TCATGA 1 cut(s) 619
PceI AGGCCT 1 cut(s) 596
PciI ACATGT 1 cut(s) 384
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 195
PdmI GAANNNNTTC 1 cut(s) 77
PfeI GAWTC 2 cut(s) 7, 248
PflMI CCANNNNNTGG 1 cut(s) 1016
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 6 cut(s) 241, 470, 589, 739, 811, 1024
PleI GAGTC 2 cut(s) 669, 917
PluTI GGCGCC 1 cut(s) 117
PpsI GAGTC 2 cut(s) 669, 917
Ppu21I YACGTR 1 cut(s) 731
PscI ACATGT 1 cut(s) 384
Psp124BI GAGCTC 1 cut(s) 619
Psp1406I AACGTT 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 354, 976
PspGI CCWGG 2 cut(s) 354, 976
PspN4I GGNNCC 3 cut(s) 115, 174, 448
PspPI GGNCC 3 cut(s) 100, 548, 632
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 2 cut(s) 172, 795
PvuII CAGCTG 2 cut(s) 812, 1013
RsaI GTAC 4 cut(s) 282, 487, 655, 846
RsaNI GTAC 4 cut(s) 281, 486, 654, 845
RseI CAYNNNNRTG 1 cut(s) 18
SacI GAGCTC 1 cut(s) 619
SaqAI TTAA 6 cut(s) 339, 599, 662, 915, 963, 1054
SatI GCNGC 6 cut(s) 240, 469, 588, 738, 810, 1023
Sau3AI GATC 4 cut(s) 172, 183, 715, 795
Sau96I GGNCC 3 cut(s) 100, 548, 632
SchI GAGTC 2 cut(s) 669, 918
ScrFI CCNGG 4 cut(s) 170, 356, 890, 978
SduI GDGCHC 3 cut(s) 619, 730, 985
SfaNI GCATC 4 cut(s) 412, 545, 633, 796
SfcI CTRYAG 2 cut(s) 237, 426
SfoI GGCGCC 1 cut(s) 115
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 750
SmoI CTYRAG 1 cut(s) 750
Sse9I AATT 3 cut(s) 370, 582, 783
SseBI AGGCCT 1 cut(s) 596
SsiI CCGC 3 cut(s) 312, 605, 906
SspDI GGCGCC 1 cut(s) 113
SspMI CTAG 4 cut(s) 254, 393, 441, 531
SstI GAGCTC 1 cut(s) 619
StuI AGGCCT 1 cut(s) 596
StyD4I CCNGG 4 cut(s) 168, 354, 888, 976
StyI CCWWGG 2 cut(s) 450, 463
TaaI ACNGT 4 cut(s) 77, 110, 127, 285
TaiI ACGT 2 cut(s) 166, 733
TaqII GACCGA 1 cut(s) 179
TasI AATT 3 cut(s) 370, 582, 783
TatI WGTACW 2 cut(s) 280, 844
TfiI GAWTC 2 cut(s) 7, 248
Tru1I TTAA 6 cut(s) 339, 599, 662, 915, 963, 1054
Tru9I TTAA 6 cut(s) 339, 599, 662, 915, 963, 1054
TscAI CASTG 1 cut(s) 835
TseI GCWGC 6 cut(s) 239, 468, 587, 737, 809, 1022
TspDTI ATGAA 3 cut(s) 528, 795, 1052
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 835
Van91I CCANNNNNTGG 1 cut(s) 1016
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 1 cut(s) 783
XceI RCATGY 1 cut(s) 388
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 4 cut(s) 254, 393, 441, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.