Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011216.1

Orthogroup ID

OG0010229

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2674

Gene Structure 2674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011216.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 772 bp

atgaagcgctacaggaacggcgaaatctgggactacgaggaacaaatgccggtctccgacgccgcccgtgacgtcattctcggtttggacggcggcacaacctccaccgtctgcatttgcatgcctattttgcccttctccgatcctctgccccacccggttcccgttttggctcgcgccgtcgccggttgctccaatcacaacagcgtcggcgaggctgctgccagggaaacattggagcaagtgatggcggaggcgcttgcgaaagccggttcgaaccgggatatattccccagtgatgtgaggttgtatgttcagaatgatgctgtggcagctttggcgtgtggaactatgggaaagcttcatgggtgtgttctgattgctggcacgggcaccattgcgtatggattcaccgaagacggtagaaatgctcgggctgctggcgcaggacctaccttaggtgattggggaagtggatatggaatagctgcacaggcgttaactgcaatcataagggcccatgacggtcgtggtccacatacagcacttacctctagtattttagagaagcttggtctttcttctccagatgaactcatcgggtggacatatgcagatccatcttgggctcgcattgccgcacttgttccagaggttgtatcttgtgcagaggctggtgatgaagtcgcaaataagatcttgtttgattcagttgaggagttggggttaagtgtgaaagctgttgttcagagacttgacttgtgtggcccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BcrAD_BadFG

Protein Analysis

257

Amino Acids

26.86

Weight (kDa)

4.78

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30540 AT1G30540
fragaria_vesca	FvH4_6g39150
malus_domestica	MD09G1144800.v1.1 MD17G1131300.v1.1
prunus_persica	Prupe.3G183100_v2.0.a1 Prupe.3G183100_v2.0.a1 Prupe.3G183100_v2.0.a1
pyrus_communis	pycom09g06420 pycom17g12410
rosa_chinensis	RchiOBHm_Chr2g0152961
rosa_laevigata	RLG00000020660
rosa_multiflora	Rmu_sc0008143.1_g000001 Rmu_sc0011216.1_g000001 Rmu_ssc0000489.1_g000002
rosa_rugosa	Rorug02G0436500
rosa_samantha	Rh2AG498500 Rh2BG509700 Rh2CG484600 Rh2DG521300
rosa_wichuraiana	Rw2G040910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	392
AccII	CGCG	1 cut(s)	177
AciI	CCGC	4 cut(s)	63, 93, 251, 639
AclWI	GGATC	2 cut(s)	137, 611
AcyI	GRCGYC	2 cut(s)	60, 72
AfeI	AGCGCT	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	5 cut(s)	335, 361, 488, 571, 740
AluI	AGCT	5 cut(s)	335, 361, 488, 571, 740
Alw26I	GTCTC	2 cut(s)	58, 745
AlwI	GGATC	2 cut(s)	137, 611
AlwNI	CAGNNNCTG	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	432
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	2 cut(s)	516, 766
ApaI	GGGCCC	1 cut(s)	520
ApeKI	GCWGC	5 cut(s)	218, 221, 332, 437, 488
AspLEI	GCGC	4 cut(s)	9, 179, 259, 446
AspS9I	GGNCC	5 cut(s)	449, 516, 517, 533, 767
AsuC2I	CCSGG	2 cut(s)	158, 281
AsuHPI	GGTGA	3 cut(s)	403, 473, 689
AsuII	TTCGAA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	2 cut(s)	449, 533
AxyI	CCTNAGG	1 cut(s)	457
BaeGI	GKGCMC	2 cut(s)	395, 520
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	520, 631
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	5 cut(s)	205, 208, 344, 424, 475
BccI	CCATC	2 cut(s)	241, 628
BceAI	ACGGC	3 cut(s)	34, 106, 164
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	1 cut(s)	226
BcnI	CCSGG	2 cut(s)	158, 281
BcoDI	GTCTC	2 cut(s)	58, 745
BfaI	CTAG	1 cut(s)	555
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	2 cut(s)	10, 260
BglII	AGATCT	1 cut(s)	696
BisI	GCNGC	8 cut(s)	63, 94, 219, 222, 333, 438, 489, 639
BlsI	GCNGC	8 cut(s)	64, 95, 220, 223, 334, 439, 490, 640
Bme1390I	CCNGG	3 cut(s)	158, 226, 281
Bme18I	GGWCC	2 cut(s)	449, 533
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	5 cut(s)	449, 516, 517, 533, 767
BmiI	GGNNCC	3 cut(s)	162, 394, 518
BmrFI	CCNGG	3 cut(s)	158, 226, 281
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	570
Bpu14I	TTCGAA	1 cut(s)	275
BpuMI	CCSGG	2 cut(s)	158, 281
BsaHI	GRCGYC	2 cut(s)	60, 72
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse118I	RCCGGY	3 cut(s)	49, 185, 269
Bse1I	ACTGG	1 cut(s)	294
Bse21I	CCTNAGG	1 cut(s)	457
Bse3DI	GCAATG	2 cut(s)	396, 633
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	2 cut(s)	396, 633
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	731
BseSI	GKGCMC	2 cut(s)	395, 520
BseXI	GCAGC	5 cut(s)	205, 208, 344, 424, 475
BsgI	GTGCAG	2 cut(s)	474, 687
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	518, 768
BshNI	GGYRCC	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	529
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	5 cut(s)	50, 158, 186, 270, 280
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	2 cut(s)	58, 745
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	518, 768
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	432
Bsp119I	TTCGAA	1 cut(s)	275
Bsp120I	GGGCCC	1 cut(s)	516
Bsp1286I	GDGCHC	3 cut(s)	395, 520, 631
Bsp143I	GATC	3 cut(s)	142, 616, 696
BspACI	CCGC	4 cut(s)	63, 93, 251, 639
BspANI	GGCC	2 cut(s)	518, 768
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	162, 394, 518
BspPI	GGATC	2 cut(s)	137, 611
BspT104I	TTCGAA	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	2 cut(s)	396, 633
BsrFI	RCCGGY	3 cut(s)	49, 185, 269
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	3 cut(s)	49, 185, 269
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	142, 616, 696
BssNI	GRCGYC	2 cut(s)	60, 72
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	109, 422, 527
BstACI	GRCGYC	2 cut(s)	60, 72
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	6 cut(s)	122, 175, 261, 385, 442, 631
BstDEI	CTNAG	1 cut(s)	457
BstENI	CCTNNNNNAGG	1 cut(s)	456
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	2 cut(s)	10, 260
BstHHI	GCGC	4 cut(s)	9, 179, 259, 446
BstKTI	GATC	3 cut(s)	145, 619, 699
BstMAI	GTCTC	2 cut(s)	58, 745
BstMBI	GATC	3 cut(s)	142, 616, 696
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	8 cut(s)	130, 332, 338, 437, 443, 494, 503, 635
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	3 cut(s)	156, 224, 279
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	2 cut(s)	395, 520
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	5 cut(s)	205, 208, 344, 424, 475
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	2 cut(s)	616, 696
BstYI	RGATCY	2 cut(s)	616, 696
Bsu36I	CCTNAGG	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	518, 768
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	6 cut(s)	122, 175, 261, 385, 442, 631
CaiI	CAGNNNCTG	1 cut(s)	674
CfoI	GCGC	4 cut(s)	9, 179, 259, 446
Cfr10I	RCCGGY	3 cut(s)	49, 185, 269
Cfr13I	GGNCC	5 cut(s)	449, 516, 517, 533, 767
CseI	GACGC	2 cut(s)	68, 196
CviAII	CATG	3 cut(s)	121, 365, 521
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	3 cut(s)	144, 618, 698
DpnII	GATC	3 cut(s)	142, 616, 696
EciI	GGCGGA	1 cut(s)	266
Eco24I	GRGCYC	2 cut(s)	520, 631
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	449, 533
Eco47III	AGCGCT	1 cut(s)	8
Eco81I	CCTNAGG	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	432
EcoNI	CCTNNNNNAGG	1 cut(s)	456
EcoO109I	RGGNCCY	2 cut(s)	449, 516
EcoRII	CCWGG	1 cut(s)	224
EcoT38I	GRGCYC	2 cut(s)	520, 631
FaeI	CATG	3 cut(s)	124, 368, 524
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	3 cut(s)	120, 364, 520
FauNDI	CATATG	1 cut(s)	610
Fnu4HI	GCNGC	8 cut(s)	63, 94, 219, 222, 333, 438, 489, 639
FriOI	GRGCYC	2 cut(s)	520, 631
Fsp4HI	GCNGC	8 cut(s)	63, 94, 219, 222, 333, 438, 489, 639
FspBI	CTAG	1 cut(s)	555
GlaI	GCGC	4 cut(s)	8, 178, 258, 445
GluI	GCNGC	8 cut(s)	63, 94, 219, 222, 333, 438, 489, 639
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	2 cut(s)	10, 260
HaeIII	GGCC	2 cut(s)	518, 768
HapII	CCGG	5 cut(s)	50, 158, 186, 270, 280
HgaI	GACGC	2 cut(s)	68, 196
HhaI	GCGC	4 cut(s)	9, 179, 259, 446
Hin1I	GRCGYC	2 cut(s)	60, 72
Hin1II	CATG	3 cut(s)	124, 368, 524
Hin6I	GCGC	4 cut(s)	7, 177, 257, 444
HinP1I	GCGC	4 cut(s)	7, 177, 257, 444
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	2 cut(s)	359, 569
HinfI	GANTC	2 cut(s)	408, 707
HpaI	GTTAAC	1 cut(s)	501
HpaII	CCGG	5 cut(s)	50, 158, 186, 270, 280
HphI	GGTGA	3 cut(s)	403, 473, 689
Hpy166II	GTNNAC	3 cut(s)	501, 536, 606
Hpy188I	TCNGA	5 cut(s)	58, 142, 318, 378, 750
Hpy188III	TCNNGA	2 cut(s)	587, 650
Hpy8I	GTNNAC	3 cut(s)	501, 536, 606
Hpy99I	CGWCG	3 cut(s)	62, 185, 212
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	3 cut(s)	109, 422, 527
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	6 cut(s)	114, 120, 491, 506, 614, 668
HpyF10VI	GCNNNNNNNGC	8 cut(s)	130, 332, 338, 437, 443, 494, 503, 635
HpyF3I	CTNAG	1 cut(s)	457
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	2 cut(s)	60, 72
Hsp92II	CATG	3 cut(s)	124, 368, 524
HspAI	GCGC	4 cut(s)	7, 177, 257, 444
KspAI	GTTAAC	1 cut(s)	501
Kzo9I	GATC	3 cut(s)	142, 616, 696
LmnI	GCTCC	2 cut(s)	197, 238
Lsp1109I	GCAGC	5 cut(s)	205, 208, 344, 424, 475
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	3 cut(s)	144, 618, 698
MboI	GATC	3 cut(s)	142, 616, 696
MboII	GAAGA	2 cut(s)	428, 573
MflI	RGATCY	2 cut(s)	616, 696
MhlI	GDGCHC	3 cut(s)	395, 520, 631
MmeI	TCCRAC	1 cut(s)	81
MseI	TTAA	2 cut(s)	500, 728
MslI	CAYNNNNRTG	2 cut(s)	119, 369
MspI	CCGG	5 cut(s)	50, 158, 186, 270, 280
MspR9I	CCNGG	3 cut(s)	158, 226, 281
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	8 cut(s)	130, 332, 338, 437, 443, 494, 503, 635
NciI	CCSGG	2 cut(s)	158, 281
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	3 cut(s)	142, 616, 696
NlaIII	CATG	3 cut(s)	124, 368, 524
NlaIV	GGNNCC	3 cut(s)	162, 394, 518
NmuCI	GTSAC	1 cut(s)	68
NspI	RCATGY	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	408, 707
PkrI	GCNGC	8 cut(s)	64, 95, 220, 223, 334, 439, 490, 640
PpuMI	RGGWCCY	1 cut(s)	449
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	162, 394, 518
PspOMI	GGGCCC	1 cut(s)	516
PspPI	GGNCC	5 cut(s)	449, 516, 517, 533, 767
PspPPI	RGGWCCY	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	2 cut(s)	616, 696
RseI	CAYNNNNRTG	2 cut(s)	119, 369
SaqAI	TTAA	2 cut(s)	500, 728
SatI	GCNGC	8 cut(s)	63, 94, 219, 222, 333, 438, 489, 639
Sau3AI	GATC	3 cut(s)	142, 616, 696
Sau96I	GGNCC	5 cut(s)	449, 516, 517, 533, 767
ScrFI	CCNGG	3 cut(s)	158, 226, 281
SduI	GDGCHC	3 cut(s)	395, 520, 631
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	275
SinI	GGWCC	2 cut(s)	449, 533
SmiMI	CAYNNNNRTG	2 cut(s)	119, 369
SphI	GCATGC	1 cut(s)	124
SsiI	CCGC	4 cut(s)	63, 93, 251, 639
SspMI	CTAG	1 cut(s)	555
StyD4I	CCNGG	3 cut(s)	156, 224, 279
TaaI	ACNGT	3 cut(s)	109, 422, 527
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	275
TauI	GCSGC	3 cut(s)	65, 96, 641
TfiI	GAWTC	2 cut(s)	408, 707
Tru1I	TTAA	2 cut(s)	500, 728
Tru9I	TTAA	2 cut(s)	500, 728
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	5 cut(s)	218, 221, 332, 437, 488
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	4 cut(s)	17, 353, 606, 696
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	2 cut(s)	449, 533
XagI	CCTNNNNNAGG	1 cut(s)	456
XceI	RCATGY	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 527
XspI	CTAG	1 cut(s)	555
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.