FvH4_6g39150

N-acetyl-D-glucosamine kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010229
Physical Location & Seq
Reverse (-)
30977700 .. 30981910
4211 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39150.t1

Sequence Viewer

Length: 1065 bp
ATGAAGCGCTACCGGAACGGCGAAATCTGGGACTTCGAGCAACAAATGCCGCTTTCCGACGACGCCTGTGACGTCATTCTGGGGTTAGACGGCGGCACGACGTCCACGGTTTGCATTTGCATGCCTGTTTTGCCCTTCTCGGATCCTCTGCCCGACCCGGTTCCGGTTCTGGCCCGGGCCGTCGCCGGCTGCTCCAATCACAACAGCGTCGGCGAGGCGGCTGCGAGGGAGACACTGGAGCAAGTGATGGCGGAAGCACTTGCGAAATCCGGTTCGAACCGGTCGGCGGTTCGGGCGGTTTGTTTGGCGGTTTCGGGTGTGAACCATCCCTCCGATCAGCAGAGGATAATGGACTGGCTTAGGGACATATTCCCCAGGGATGTGAGGTTGTATGTTCAGAATGATGCTGTGGCGGCTTTGGCTTGCGGAACTATGGGAAAGCTTCATGGGTGTGTTCTGATTGCCGGCACGGGCACCATTGCGTATGGATTCACTGAAGATGGTAGAAATGCTCGGGCTGCTGGCGCAGGACCTACCTTAGGTGATTGGGGAAGTGGATATGGAATAGCTGCACAGGCCTTAACCGCGATCATAAGGGCCCATGACGGGCGTGGTCCAAAGACAGCACTTACCTCTAGTATTTTAGAGAAGCTTGATCTTTCTTCTGCAGATGAACTCATCGGGTGGACTTATGCAGATCCATCTTGGGCTCGCATTGCAGCACTTGTTCCAGAGGTTGTATCATGTGCAGAGGCTGGTGATGAAGTAGCAAATAAGATATTGTTTGATTCAGTTGAGGAGTTGGGTTTAAGTGTGAAAGCTGTTGTTCAAAGACTTGACTTGTGTGGCCCAGAAGGAAGAGATTCTTTTCCCCTTGTCATGGTTGGTGGTGTTCTTGAAGCAAATAAGAGGTGGGATATAGGTACAGAAGTGATTAGATGCATCTCCAAAGAGTATCCGGGGGCAGTTCCTATTAGACCCAAGGTGGAGCCTGCAGTTGGAGCAGCATTGCTAGCCTGGAACTGTCTGATGAAAGAATCTGTTAAAGAAACCTTCAAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BcrAD_BadFG

Protein Analysis

355

Amino Acids

37.6

Weight (kDa)

4.97

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BcrAD_BadFG PF01869 27 - 339 2.1e-58 BadF/BadG/BcrA/BcrD ATPase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 75, 104
AccB1I GGYRCC 1 cut(s) 473
AccII CGCG 1 cut(s) 587
AclWI GGATC 3 cut(s) 137, 150, 692
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 3 cut(s) 63, 72, 101
AfaI GTAC 1 cut(s) 925
AfeI AGCGCT 1 cut(s) 8
AfiI CCNNNNNNNGG 6 cut(s) 163, 286, 539, 606, 880, 998
AgeI ACCGGT 1 cut(s) 279
AgsI TTSAA 3 cut(s) 830, 899, 1057
AjnI CCWGG 2 cut(s) 374, 1016
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
AluBI AGCT 4 cut(s) 442, 569, 652, 821
AluI AGCT 4 cut(s) 442, 569, 652, 821
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 3 cut(s) 137, 150, 692
AlwNI CAGNNNCTG 1 cut(s) 755
Ama87I CYCGRG 2 cut(s) 174, 513
Aor51HI AGCGCT 1 cut(s) 8
AoxI GGCC 5 cut(s) 171, 177, 576, 597, 847
ApaI GGGCCC 1 cut(s) 601
ApeKI GCWGC 6 cut(s) 189, 221, 518, 569, 719, 1004
AsiGI ACCGGT 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 862
AspLEI GCGC 2 cut(s) 9, 527
AspS9I GGNCC 7 cut(s) 172, 177, 530, 597, 598, 614, 848
AsuC2I CCSGG 4 cut(s) 158, 175, 176, 960
AsuHPI GGTGA 2 cut(s) 554, 770
AsuII TTCGAA 1 cut(s) 275
AsuNHI GCTAGC 1 cut(s) 1012
AvaI CYCGRG 2 cut(s) 174, 513
AvaII GGWCC 2 cut(s) 530, 614
AxyI CCTNAGG 1 cut(s) 538
BaeGI GKGCMC 2 cut(s) 476, 601
BaeI ACNNNNGTAYC 2 cut(s) 915, 948
BamHI GGATCC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 2 cut(s) 601, 712
BbvI GCAGC 6 cut(s) 176, 208, 505, 556, 731, 1016
BccI CCATC 4 cut(s) 241, 333, 494, 709
BceAI ACGGC 3 cut(s) 34, 106, 164
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 2 cut(s) 376, 1018
BciVI GTATCC 1 cut(s) 966
BcnI CCSGG 4 cut(s) 158, 175, 176, 960
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 2 cut(s) 636, 1013
BfmI CTRYAG 2 cut(s) 666, 993
BfoI RGCGCY 1 cut(s) 10
BfuI GTATCC 1 cut(s) 966
Bme1390I CCNGG 6 cut(s) 158, 175, 176, 376, 960, 1018
Bme18I GGWCC 2 cut(s) 530, 614
BmeT110I CYCGRG 2 cut(s) 174, 513
BmgT120I GGNCC 7 cut(s) 172, 177, 530, 597, 598, 614, 848
BmiI GGNNCC 5 cut(s) 144, 162, 475, 599, 990
BmrFI CCNGG 6 cut(s) 158, 175, 176, 376, 960, 1018
BmsI GCATC 3 cut(s) 394, 929, 951
BmtI GCTAGC 1 cut(s) 1016
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 359
Bpu14I TTCGAA 1 cut(s) 275
BpuMI CCSGG 4 cut(s) 158, 175, 176, 960
BsaHI GRCGYC 3 cut(s) 63, 72, 101
BsaJI CCNNGG 6 cut(s) 105, 174, 374, 375, 959, 981
BsaWI WCCGGW 4 cut(s) 12, 163, 269, 279
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 286, 539, 606, 880, 998
Bse118I RCCGGY 3 cut(s) 185, 279, 464
Bse1I ACTGG 2 cut(s) 240, 359
Bse21I CCTNAGG 1 cut(s) 538
Bse3DI GCAATG 3 cut(s) 477, 714, 1007
BseBI CCWGG 2 cut(s) 376, 1018
BseDI CCNNGG 6 cut(s) 105, 174, 374, 375, 959, 981
BseGI GGATG 2 cut(s) 325, 385
BseLI CCNNNNNNNGG 6 cut(s) 163, 286, 539, 606, 880, 998
BseMI GCAATG 3 cut(s) 477, 714, 1007
BseNI ACTGG 2 cut(s) 240, 359
BseRI GAGGAG 1 cut(s) 812
BseSI GKGCMC 2 cut(s) 476, 601
BseXI GCAGC 6 cut(s) 176, 208, 505, 556, 731, 1016
BsgI GTGCAG 2 cut(s) 555, 768
Bsh1236I CGCG 1 cut(s) 587
Bsh1285I CGRYCG 1 cut(s) 284
BshFI GGCC 5 cut(s) 173, 179, 578, 599, 849
BshNI GGYRCC 1 cut(s) 473
BshTI ACCGGT 1 cut(s) 279
BsiEI CGRYCG 1 cut(s) 284
BsiHKCI CYCGRG 2 cut(s) 174, 513
BsiSI CCGG 9 cut(s) 13, 158, 164, 175, 186, 270, 280, 465, 959
BslFI GGGAC 2 cut(s) 44, 377
BslI CCNNNNNNNGG 6 cut(s) 163, 286, 539, 606, 880, 998
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 44, 377
BsnI GGCC 5 cut(s) 173, 179, 578, 599, 849
BsoBI CYCGRG 2 cut(s) 174, 513
Bsp119I TTCGAA 1 cut(s) 275
Bsp120I GGGCCC 1 cut(s) 597
Bsp1286I GDGCHC 3 cut(s) 476, 601, 712
Bsp143I GATC 5 cut(s) 142, 334, 588, 655, 697
BspANI GGCC 5 cut(s) 173, 179, 578, 599, 849
BspFNI CGCG 1 cut(s) 587
BspLI GGNNCC 5 cut(s) 144, 162, 475, 599, 990
BspMAI CTGCAG 2 cut(s) 670, 997
BspOI GCTAGC 1 cut(s) 1016
BspPI GGATC 3 cut(s) 137, 150, 692
BspT104I TTCGAA 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 473
BsrDI GCAATG 3 cut(s) 477, 714, 1007
BsrFI RCCGGY 3 cut(s) 185, 279, 464
BsrI ACTGG 2 cut(s) 240, 359
BssAI RCCGGY 3 cut(s) 185, 279, 464
BssECI CCNNGG 6 cut(s) 105, 174, 374, 375, 959, 981
BssMI GATC 5 cut(s) 142, 334, 588, 655, 697
BssNI GRCGYC 3 cut(s) 63, 72, 101
BssT1I CCWWGG 1 cut(s) 981
Bst2UI CCWGG 2 cut(s) 376, 1018
Bst4CI ACNGT 2 cut(s) 109, 1025
Bst6I CTCTTC 1 cut(s) 853
BstACI GRCGYC 3 cut(s) 63, 72, 101
BstAPI GCANNNNNTGC 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 275
BstC8I GCNNGC 8 cut(s) 122, 187, 424, 466, 523, 712, 993, 1014
BstDEI CTNAG 2 cut(s) 359, 538
BstDSI CCRYGG 1 cut(s) 105
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 2 cut(s) 325, 385
BstFNI CGCG 1 cut(s) 587
BstH2I RGCGCY 1 cut(s) 10
BstHHI GCGC 2 cut(s) 9, 527
BstKTI GATC 5 cut(s) 145, 337, 591, 658, 700
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 5 cut(s) 142, 334, 588, 655, 697
BstMCI CGRYCG 1 cut(s) 284
BstNI CCWGG 2 cut(s) 376, 1018
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 6 cut(s) 156, 173, 174, 374, 958, 1016
BstSFI CTRYAG 2 cut(s) 666, 993
BstSLI GKGCMC 2 cut(s) 476, 601
BstUI CGCG 1 cut(s) 587
BstV1I GCAGC 6 cut(s) 176, 208, 505, 556, 731, 1016
BstX2I RGATCY 2 cut(s) 142, 697
BstYI RGATCY 2 cut(s) 142, 697
Bsu36I CCTNAGG 1 cut(s) 538
BsuI GTATCC 1 cut(s) 966
BsuRI GGCC 5 cut(s) 173, 179, 578, 599, 849
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 325, 385
BtsIMutI CAGTG 2 cut(s) 233, 492
Cac8I GCNNGC 8 cut(s) 122, 187, 424, 466, 523, 712, 993, 1014
CaiI CAGNNNCTG 1 cut(s) 755
CfoI GCGC 2 cut(s) 9, 527
Cfr10I RCCGGY 3 cut(s) 185, 279, 464
Cfr13I GGNCC 7 cut(s) 172, 177, 530, 597, 598, 614, 848
Cfr9I CCCGGG 1 cut(s) 174
CseI GACGC 2 cut(s) 71, 196
Csp6I GTAC 1 cut(s) 924
CspAI ACCGGT 1 cut(s) 279
CviAII CATG 5 cut(s) 121, 446, 602, 744, 880
CviQI GTAC 1 cut(s) 924
DdeI CTNAG 2 cut(s) 359, 538
DpnI GATC 5 cut(s) 144, 336, 590, 657, 699
DpnII GATC 5 cut(s) 142, 334, 588, 655, 697
Eam1104I CTCTTC 1 cut(s) 853
EarI CTCTTC 1 cut(s) 853
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 981
Eco147I AGGCCT 1 cut(s) 578
Eco24I GRGCYC 2 cut(s) 601, 712
Eco47I GGWCC 2 cut(s) 530, 614
Eco47III AGCGCT 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 516
Eco81I CCTNAGG 1 cut(s) 538
Eco88I CYCGRG 2 cut(s) 174, 513
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoO109I RGGNCCY 2 cut(s) 530, 597
EcoRII CCWGG 2 cut(s) 374, 1016
EcoT14I CCWWGG 1 cut(s) 981
EcoT22I ATGCAT 1 cut(s) 944
EcoT38I GRGCYC 2 cut(s) 601, 712
ErhI CCWWGG 1 cut(s) 981
FaeI CATG 5 cut(s) 124, 449, 605, 747, 883
FalI AAGNNNNNCTT 2 cut(s) 850, 882
FaqI GGGAC 2 cut(s) 44, 377
FatI CATG 5 cut(s) 120, 445, 601, 743, 879
FokI GGATG 2 cut(s) 312, 392
FriOI GRGCYC 2 cut(s) 601, 712
FspBI CTAG 2 cut(s) 636, 1013
GlaI GCGC 2 cut(s) 8, 526
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 1 cut(s) 10
HaeIII GGCC 5 cut(s) 173, 179, 578, 599, 849
HapII CCGG 9 cut(s) 13, 158, 164, 175, 186, 270, 280, 465, 959
HgaI GACGC 2 cut(s) 71, 196
HhaI GCGC 2 cut(s) 9, 527
Hin1I GRCGYC 3 cut(s) 63, 72, 101
Hin1II CATG 5 cut(s) 124, 449, 605, 747, 883
Hin6I GCGC 2 cut(s) 7, 525
HinP1I GCGC 2 cut(s) 7, 525
HindIII AAGCTT 2 cut(s) 440, 650
HinfI GANTC 4 cut(s) 489, 788, 863, 1037
HpaII CCGG 9 cut(s) 13, 158, 164, 175, 186, 270, 280, 465, 959
HphI GGTGA 2 cut(s) 554, 770
Hpy166II GTNNAC 3 cut(s) 105, 322, 687
Hpy188I TCNGA 6 cut(s) 58, 142, 334, 399, 459, 1029
Hpy188III TCNNGA 2 cut(s) 731, 896
Hpy8I GTNNAC 3 cut(s) 105, 322, 687
Hpy99I CGWCG 5 cut(s) 62, 65, 103, 185, 212
HpyAV CCTTC 3 cut(s) 145, 848, 1063
HpyCH4III ACNGT 2 cut(s) 109, 1025
HpyCH4IV ACGT 2 cut(s) 72, 101
HpyCH4V TGCA 9 cut(s) 114, 120, 572, 668, 695, 719, 749, 942, 995
HpyF3I CTNAG 2 cut(s) 359, 538
HpySE526I ACGT 2 cut(s) 72, 101
Hsp92I GRCGYC 3 cut(s) 63, 72, 101
Hsp92II CATG 5 cut(s) 124, 449, 605, 747, 883
HspAI GCGC 2 cut(s) 7, 525
KroI GCCGGC 2 cut(s) 185, 464
KroNI GCCGGC 2 cut(s) 187, 466
Kzo9I GATC 5 cut(s) 142, 334, 588, 655, 697
LmnI GCTCC 4 cut(s) 197, 238, 988, 1001
Lsp1109I GCAGC 6 cut(s) 176, 208, 505, 556, 731, 1016
LweI GCATC 3 cut(s) 394, 929, 951
MaeI CTAG 2 cut(s) 636, 1013
MaeII ACGT 2 cut(s) 72, 101
MaeIII GTNAC 1 cut(s) 68
MalI GATC 5 cut(s) 144, 336, 590, 657, 699
MboI GATC 5 cut(s) 142, 334, 588, 655, 697
MboII GAAGA 3 cut(s) 509, 654, 870
MflI RGATCY 2 cut(s) 142, 697
MhlI GDGCHC 3 cut(s) 476, 601, 712
MmeI TCCRAC 2 cut(s) 81, 979
Mph1103I ATGCAT 1 cut(s) 944
MroNI GCCGGC 2 cut(s) 185, 464
MroXI GAANNNNTTC 1 cut(s) 862
MseI TTAA 3 cut(s) 581, 809, 1044
MslI CAYNNNNRTG 2 cut(s) 119, 450
MspI CCGG 9 cut(s) 13, 158, 164, 175, 186, 270, 280, 465, 959
MspR9I CCNGG 6 cut(s) 158, 175, 176, 376, 960, 1018
MvaI CCWGG 2 cut(s) 376, 1018
MvnI CGCG 1 cut(s) 587
NaeI GCCGGC 2 cut(s) 187, 466
NciI CCSGG 4 cut(s) 158, 175, 176, 960
NdeII GATC 5 cut(s) 142, 334, 588, 655, 697
NgoMIV GCCGGC 2 cut(s) 185, 464
NheI GCTAGC 1 cut(s) 1012
NlaIII CATG 5 cut(s) 124, 449, 605, 747, 883
NlaIV GGNNCC 5 cut(s) 144, 162, 475, 599, 990
NmuCI GTSAC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 944
NspI RCATGY 1 cut(s) 124
NspV TTCGAA 1 cut(s) 275
PaeI GCATGC 1 cut(s) 124
PasI CCCWGGG 1 cut(s) 375
PceI AGGCCT 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdiI GCCGGC 2 cut(s) 187, 466
PdmI GAANNNNTTC 1 cut(s) 862
PfeI GAWTC 4 cut(s) 489, 788, 863, 1037
PinAI ACCGGT 1 cut(s) 279
PpuMI RGGWCCY 1 cut(s) 530
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 2 cut(s) 374, 1016
PspGI CCWGG 2 cut(s) 374, 1016
PspN4I GGNNCC 5 cut(s) 144, 162, 475, 599, 990
PspOMI GGGCCC 1 cut(s) 597
PspPI GGNCC 7 cut(s) 172, 177, 530, 597, 598, 614, 848
PspPPI RGGWCCY 1 cut(s) 530
PstI CTGCAG 2 cut(s) 670, 997
PstNI CAGNNNCTG 1 cut(s) 755
PsuI RGATCY 2 cut(s) 142, 697
RsaI GTAC 1 cut(s) 925
RsaNI GTAC 1 cut(s) 924
RseI CAYNNNNRTG 2 cut(s) 119, 450
SaqAI TTAA 3 cut(s) 581, 809, 1044
Sau3AI GATC 5 cut(s) 142, 334, 588, 655, 697
Sau96I GGNCC 7 cut(s) 172, 177, 530, 597, 598, 614, 848
ScrFI CCNGG 6 cut(s) 158, 175, 176, 376, 960, 1018
SduI GDGCHC 3 cut(s) 476, 601, 712
SfaNI GCATC 3 cut(s) 394, 929, 951
SfcI CTRYAG 2 cut(s) 666, 993
SfuI TTCGAA 1 cut(s) 275
SinI GGWCC 2 cut(s) 530, 614
SmaI CCCGGG 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 119, 450
SphI GCATGC 1 cut(s) 124
SrfI GCCCGGGC 1 cut(s) 176
SseBI AGGCCT 1 cut(s) 578
SspMI CTAG 2 cut(s) 636, 1013
StuI AGGCCT 1 cut(s) 578
StyD4I CCNGG 6 cut(s) 156, 173, 174, 374, 958, 1016
StyI CCWWGG 1 cut(s) 981
TaaI ACNGT 2 cut(s) 109, 1025
TaiI ACGT 2 cut(s) 75, 104
TaqI TCGA 2 cut(s) 36, 275
TauI GCSGC 4 cut(s) 52, 96, 221, 416
TfiI GAWTC 4 cut(s) 489, 788, 863, 1037
Tru1I TTAA 3 cut(s) 581, 809, 1044
Tru9I TTAA 3 cut(s) 581, 809, 1044
TscAI CASTG 2 cut(s) 240, 499
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 6 cut(s) 189, 221, 518, 569, 719, 1004
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 5 cut(s) 17, 434, 687, 777, 1046
TspMI CCCGGG 1 cut(s) 174
TspRI CASTG 2 cut(s) 240, 499
VpaK11BI GGWCC 2 cut(s) 530, 614
XagI CCTNNNNNAGG 1 cut(s) 537
XceI RCATGY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XmaI CCCGGG 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 862
XspI CTAG 2 cut(s) 636, 1013
ZraI GACGTC 2 cut(s) 73, 102
Zsp2I ATGCAT 1 cut(s) 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.