Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000489.1

Orthogroup ID

OG0010229

Physical Location & Seq

Genomic Coordinates Forward (+)

3997 .. 7122

Gene Structure 3126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000489.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgaagcgctacaggaacggcgaaatctgggactacgaggaacaaatgccggtctccgacgccgcccgtgacgtcattctcggtttggacggcggcacaacctccaccgtctgcatttgcatgcctattttgcccttctccgatcctctgccccacccggttcccgttttggctcgcgccgtcgccggttgctccaatcacaacagcgtcggcgaggctgctgccagggaaacattggagcaagtgatggcggaggcgcttgcgaaagccggttcgaaccggtcggcgatcnnnnnaaagcttcatgggtgtgttctgattgctggcacgggcaccattgcgtatggattcaccgaagacggtagaaatgctcgggctgctggcgcaggacctaccttaggtgattggggaagtggatatggaatagctgcacaggcgttaactgcaatcataagggcccatgacggtcgtggtccacatacagcacttacctctagtattttagagaagcttggtctttcttctccagatgaactcatcgggtggacatatgcagatccatcttgggctcgcattgccgcacttgttccagaggttgtatcttgtgcagaggctggtgatgaagtcgcaaataagatcttgtttgattcagttgaggagttggggttaagtgtgaaagctgttgttcagagacttgacttgtgtggcccagatggaaaagattcttttccccttgtcatggttggtggtgttcttgaggcaaataagaggtgggatataggaaaggaagtgattagatgcatctccaaggactacccaggggcagttccaattagacctgaggtggagcctgcagttggggcagcattgttagcatggaactgtttgatgaaagaatctgttaaagaagccttcaagtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BcrAD_BadFG

Protein Analysis

307

Amino Acids

32.15

Weight (kDa)

5.07

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30540 AT1G30540
fragaria_vesca	FvH4_6g39150
malus_domestica	MD09G1144800.v1.1 MD17G1131300.v1.1
prunus_persica	Prupe.3G183100_v2.0.a1 Prupe.3G183100_v2.0.a1 Prupe.3G183100_v2.0.a1
pyrus_communis	pycom09g06420 pycom17g12410
rosa_chinensis	RchiOBHm_Chr2g0152961
rosa_laevigata	RLG00000020660
rosa_multiflora	Rmu_sc0008143.1_g000001 Rmu_sc0011216.1_g000001 Rmu_ssc0000489.1_g000002
rosa_rugosa	Rorug02G0436500
rosa_samantha	Rh2AG498500 Rh2BG509700 Rh2CG484600 Rh2DG521300
rosa_wichuraiana	Rw2G040910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	332
AccII	CGCG	1 cut(s)	177
AciI	CCGC	4 cut(s)	63, 93, 251, 579
AclWI	GGATC	2 cut(s)	137, 551
AcyI	GRCGYC	2 cut(s)	60, 72
AfeI	AGCGCT	1 cut(s)	8
AfiI	CCNNNNNNNGG	3 cut(s)	398, 739, 857
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	916
AjnI	CCWGG	2 cut(s)	224, 817
AluBI	AGCT	4 cut(s)	301, 428, 511, 680
AluI	AGCT	4 cut(s)	301, 428, 511, 680
Alw26I	GTCTC	2 cut(s)	58, 685
AlwI	GGATC	2 cut(s)	137, 551
AlwNI	CAGNNNCTG	1 cut(s)	614
Ama87I	CYCGRG	1 cut(s)	372
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	2 cut(s)	456, 706
ApaI	GGGCCC	1 cut(s)	460
ApeKI	GCWGC	5 cut(s)	218, 221, 377, 428, 863
AsiGI	ACCGGT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	721
AspLEI	GCGC	4 cut(s)	9, 179, 259, 386
AspS9I	GGNCC	5 cut(s)	389, 456, 457, 473, 707
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	3 cut(s)	343, 413, 629
AsuII	TTCGAA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	372
AvaII	GGWCC	2 cut(s)	389, 473
AxyI	CCTNAGG	2 cut(s)	397, 840
BaeGI	GKGCMC	2 cut(s)	335, 460
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	460, 571
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	5 cut(s)	205, 208, 364, 415, 875
BccI	CCATC	3 cut(s)	241, 568, 707
BceAI	ACGGC	3 cut(s)	34, 106, 164
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	2 cut(s)	226, 819
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	2 cut(s)	58, 685
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	2 cut(s)	10, 852
BfoI	RGCGCY	2 cut(s)	10, 260
BglII	AGATCT	1 cut(s)	636
BisI	GCNGC	8 cut(s)	63, 94, 219, 222, 378, 429, 579, 864
BlsI	GCNGC	8 cut(s)	64, 95, 220, 223, 379, 430, 580, 865
Bme1390I	CCNGG	3 cut(s)	158, 226, 819
Bme18I	GGWCC	2 cut(s)	389, 473
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	5 cut(s)	389, 456, 457, 473, 707
BmiI	GGNNCC	4 cut(s)	162, 334, 458, 849
BmrFI	CCNGG	3 cut(s)	158, 226, 819
BmsI	GCATC	2 cut(s)	788, 810
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	776
BpuMI	CCSGG	1 cut(s)	158
BsaHI	GRCGYC	2 cut(s)	60, 72
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	4 cut(s)	225, 807, 817, 818
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	650, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 739, 857
Bse118I	RCCGGY	4 cut(s)	49, 185, 269, 279
Bse21I	CCTNAGG	2 cut(s)	397, 840
Bse3DI	GCAATG	2 cut(s)	336, 573
BseBI	CCWGG	2 cut(s)	226, 819
BseDI	CCNNGG	4 cut(s)	225, 807, 817, 818
BseLI	CCNNNNNNNGG	3 cut(s)	398, 739, 857
BseMI	GCAATG	2 cut(s)	336, 573
BseMII	CTCAG	1 cut(s)	831
BseRI	GAGGAG	1 cut(s)	671
BseSI	GKGCMC	2 cut(s)	335, 460
BseXI	GCAGC	5 cut(s)	205, 208, 364, 415, 875
BsgI	GTGCAG	2 cut(s)	414, 627
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	2 cut(s)	284, 469
BshFI	GGCC	2 cut(s)	458, 708
BshNI	GGYRCC	1 cut(s)	332
BshTI	ACCGGT	1 cut(s)	279
BsiEI	CGRYCG	2 cut(s)	284, 469
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	5 cut(s)	50, 158, 186, 270, 280
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	3 cut(s)	398, 739, 857
BsmAI	GTCTC	2 cut(s)	58, 685
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	458, 708
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	372
Bsp119I	TTCGAA	1 cut(s)	275
Bsp120I	GGGCCC	1 cut(s)	456
Bsp1286I	GDGCHC	3 cut(s)	335, 460, 571
Bsp143I	GATC	4 cut(s)	142, 288, 556, 636
BspACI	CCGC	4 cut(s)	63, 93, 251, 579
BspANI	GGCC	2 cut(s)	458, 708
BspCNI	CTCAG	1 cut(s)	832
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	4 cut(s)	162, 334, 458, 849
BspMAI	CTGCAG	1 cut(s)	856
BspPI	GGATC	2 cut(s)	137, 551
BspT104I	TTCGAA	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	2 cut(s)	336, 573
BsrFI	RCCGGY	4 cut(s)	49, 185, 269, 279
BssAI	RCCGGY	4 cut(s)	49, 185, 269, 279
BssECI	CCNNGG	4 cut(s)	225, 807, 817, 818
BssMI	GATC	4 cut(s)	142, 288, 556, 636
BssNI	GRCGYC	2 cut(s)	60, 72
BssT1I	CCWWGG	1 cut(s)	807
Bst2UI	CCWGG	2 cut(s)	226, 819
Bst4CI	ACNGT	4 cut(s)	109, 362, 467, 884
BstACI	GRCGYC	2 cut(s)	60, 72
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	7 cut(s)	122, 175, 261, 325, 382, 571, 852
BstDEI	CTNAG	2 cut(s)	397, 840
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	2 cut(s)	10, 260
BstHHI	GCGC	4 cut(s)	9, 179, 259, 386
BstKTI	GATC	4 cut(s)	145, 291, 559, 639
BstMAI	GTCTC	2 cut(s)	58, 685
BstMBI	GATC	4 cut(s)	142, 288, 556, 636
BstMCI	CGRYCG	2 cut(s)	284, 469
BstMWI	GCNNNNNNNGC	8 cut(s)	130, 377, 383, 434, 443, 575, 860, 872
BstNI	CCWGG	2 cut(s)	226, 819
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	3 cut(s)	156, 224, 817
BstSFI	CTRYAG	2 cut(s)	10, 852
BstSLI	GKGCMC	2 cut(s)	335, 460
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	5 cut(s)	205, 208, 364, 415, 875
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	2 cut(s)	556, 636
BstYI	RGATCY	2 cut(s)	556, 636
Bsu36I	CCTNAGG	2 cut(s)	397, 840
BsuRI	GGCC	2 cut(s)	458, 708
Cac8I	GCNNGC	7 cut(s)	122, 175, 261, 325, 382, 571, 852
CaiI	CAGNNNCTG	1 cut(s)	614
CfoI	GCGC	4 cut(s)	9, 179, 259, 386
Cfr10I	RCCGGY	4 cut(s)	49, 185, 269, 279
Cfr13I	GGNCC	5 cut(s)	389, 456, 457, 473, 707
CseI	GACGC	2 cut(s)	68, 196
CspAI	ACCGGT	1 cut(s)	279
CviAII	CATG	5 cut(s)	121, 305, 461, 739, 876
DdeI	CTNAG	2 cut(s)	397, 840
DpnI	GATC	4 cut(s)	144, 290, 558, 638
DpnII	GATC	4 cut(s)	142, 288, 556, 636
EciI	GGCGGA	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	807
Eco24I	GRGCYC	2 cut(s)	460, 571
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	389, 473
Eco47III	AGCGCT	1 cut(s)	8
Eco81I	CCTNAGG	2 cut(s)	397, 840
Eco88I	CYCGRG	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoO109I	RGGNCCY	2 cut(s)	389, 456
EcoRII	CCWGG	2 cut(s)	224, 817
EcoT14I	CCWWGG	1 cut(s)	807
EcoT22I	ATGCAT	1 cut(s)	803
EcoT38I	GRGCYC	2 cut(s)	460, 571
ErhI	CCWWGG	1 cut(s)	807
FaeI	CATG	5 cut(s)	124, 308, 464, 742, 879
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	5 cut(s)	120, 304, 460, 738, 875
FauNDI	CATATG	1 cut(s)	550
Fnu4HI	GCNGC	8 cut(s)	63, 94, 219, 222, 378, 429, 579, 864
FriOI	GRGCYC	2 cut(s)	460, 571
Fsp4HI	GCNGC	8 cut(s)	63, 94, 219, 222, 378, 429, 579, 864
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	4 cut(s)	8, 178, 258, 385
GluI	GCNGC	8 cut(s)	63, 94, 219, 222, 378, 429, 579, 864
GsuI	CTGGAG	1 cut(s)	510
HaeII	RGCGCY	2 cut(s)	10, 260
HaeIII	GGCC	2 cut(s)	458, 708
HapII	CCGG	5 cut(s)	50, 158, 186, 270, 280
HgaI	GACGC	2 cut(s)	68, 196
HhaI	GCGC	4 cut(s)	9, 179, 259, 386
Hin1I	GRCGYC	2 cut(s)	60, 72
Hin1II	CATG	5 cut(s)	124, 308, 464, 742, 879
Hin6I	GCGC	4 cut(s)	7, 177, 257, 384
HinP1I	GCGC	4 cut(s)	7, 177, 257, 384
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HindIII	AAGCTT	2 cut(s)	299, 509
HinfI	GANTC	4 cut(s)	348, 647, 722, 896
HpaI	GTTAAC	1 cut(s)	441
HpaII	CCGG	5 cut(s)	50, 158, 186, 270, 280
HphI	GGTGA	3 cut(s)	343, 413, 629
Hpy166II	GTNNAC	3 cut(s)	441, 476, 546
Hpy188I	TCNGA	4 cut(s)	58, 142, 318, 690
Hpy188III	TCNNGA	3 cut(s)	527, 590, 755
Hpy8I	GTNNAC	3 cut(s)	441, 476, 546
Hpy99I	CGWCG	3 cut(s)	62, 185, 212
HpyAV	CCTTC	2 cut(s)	145, 922
HpyCH4III	ACNGT	4 cut(s)	109, 362, 467, 884
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	8 cut(s)	114, 120, 431, 446, 554, 608, 801, 854
HpyF10VI	GCNNNNNNNGC	8 cut(s)	130, 377, 383, 434, 443, 575, 860, 872
HpyF3I	CTNAG	2 cut(s)	397, 840
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	2 cut(s)	60, 72
Hsp92II	CATG	5 cut(s)	124, 308, 464, 742, 879
HspAI	GCGC	4 cut(s)	7, 177, 257, 384
KspAI	GTTAAC	1 cut(s)	441
Kzo9I	GATC	4 cut(s)	142, 288, 556, 636
LmnI	GCTCC	3 cut(s)	197, 238, 847
Lsp1109I	GCAGC	5 cut(s)	205, 208, 364, 415, 875
LweI	GCATC	2 cut(s)	788, 810
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	4 cut(s)	144, 290, 558, 638
MboI	GATC	4 cut(s)	142, 288, 556, 636
MboII	GAAGA	2 cut(s)	368, 513
MflI	RGATCY	2 cut(s)	556, 636
MhlI	GDGCHC	3 cut(s)	335, 460, 571
MluCI	AATT	1 cut(s)	831
MmeI	TCCRAC	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	803
MroXI	GAANNNNTTC	1 cut(s)	721
MseI	TTAA	3 cut(s)	440, 668, 903
MslI	CAYNNNNRTG	2 cut(s)	119, 309
MspI	CCGG	5 cut(s)	50, 158, 186, 270, 280
MspR9I	CCNGG	3 cut(s)	158, 226, 819
MvaI	CCWGG	2 cut(s)	226, 819
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	8 cut(s)	130, 377, 383, 434, 443, 575, 860, 872
NciI	CCSGG	1 cut(s)	158
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	4 cut(s)	142, 288, 556, 636
NlaIII	CATG	5 cut(s)	124, 308, 464, 742, 879
NlaIV	GGNNCC	4 cut(s)	162, 334, 458, 849
NmuCI	GTSAC	1 cut(s)	68
NsiI	ATGCAT	1 cut(s)	803
NspI	RCATGY	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	124
PasI	CCCWGGG	1 cut(s)	818
PdmI	GAANNNNTTC	1 cut(s)	721
PfeI	GAWTC	4 cut(s)	348, 647, 722, 896
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	8 cut(s)	64, 95, 220, 223, 379, 430, 580, 865
PpuMI	RGGWCCY	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	389
Psp6I	CCWGG	2 cut(s)	224, 817
PspGI	CCWGG	2 cut(s)	224, 817
PspN4I	GGNNCC	4 cut(s)	162, 334, 458, 849
PspOMI	GGGCCC	1 cut(s)	456
PspPI	GGNCC	5 cut(s)	389, 456, 457, 473, 707
PspPPI	RGGWCCY	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	856
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	2 cut(s)	556, 636
RseI	CAYNNNNRTG	2 cut(s)	119, 309
SaqAI	TTAA	3 cut(s)	440, 668, 903
SatI	GCNGC	8 cut(s)	63, 94, 219, 222, 378, 429, 579, 864
Sau3AI	GATC	4 cut(s)	142, 288, 556, 636
Sau96I	GGNCC	5 cut(s)	389, 456, 457, 473, 707
ScrFI	CCNGG	3 cut(s)	158, 226, 819
SduI	GDGCHC	3 cut(s)	335, 460, 571
SfaNI	GCATC	2 cut(s)	788, 810
SfcI	CTRYAG	2 cut(s)	10, 852
SfuI	TTCGAA	1 cut(s)	275
SinI	GGWCC	2 cut(s)	389, 473
SmiMI	CAYNNNNRTG	2 cut(s)	119, 309
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	1 cut(s)	831
SsiI	CCGC	4 cut(s)	63, 93, 251, 579
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	3 cut(s)	156, 224, 817
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	4 cut(s)	109, 362, 467, 884
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	275
TasI	AATT	1 cut(s)	831
TauI	GCSGC	3 cut(s)	65, 96, 581
TfiI	GAWTC	4 cut(s)	348, 647, 722, 896
Tru1I	TTAA	3 cut(s)	440, 668, 903
Tru9I	TTAA	3 cut(s)	440, 668, 903
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	5 cut(s)	218, 221, 377, 428, 863
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	5 cut(s)	17, 293, 546, 636, 905
VpaK11BI	GGWCC	2 cut(s)	389, 473
XagI	CCTNNNNNAGG	1 cut(s)	396
XceI	RCATGY	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 467
XmnI	GAANNNNTTC	1 cut(s)	721
XspI	CTAG	1 cut(s)	495
ZraI	GACGTC	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.