Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010229

Physical Location & Seq

Genomic Coordinates Forward (+)

10158663 .. 10162208

Gene Structure 3546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g12410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAAGCGTTACAGGAACGGAGAAATCTGGGACTTCGAGCACCAAATGCCGGTGGCCGCCGGCGCTGGCGGTGTTATATTGGGTTTGGACGGCGGAACCACCTCCACCGTCTGCATTTGCATGCCGATTTTGCCCTTCTCCGACCCTTTCCCCGACCCGGTTCCCGTCCTCGCTAGAGCTGTCGCTGGCTGCACCAACCACAACAGCGTTGGCGAGGCCGCTGCGAGGGAAACATTGGAGCAGGTGATGGCGGAAGCGTTGGCCATTTCTGGTTCGAACCGATCGGTGGTTCGAGCTGTTTGTTTGGCGCTTTCCGGTGTCAACCACCCCACTGATCAGCAGAGGATATTGGATTGGCTGAGGGATATATTTCCCAGCCATGTGAGGTTGTATGTTCAGAATGATGCTGTTGCAGCTCTAGCTTGTGGGACTTTGGGGAAGCTTCATGGGTGTGTTCTAATTGCCGGCACGGGGACCATTGCGTACGGGTTCACAGAAGACGGTAGAGAAGCTCGGGCAGCCGGTGCAGGTCCTACCTTAGGTGATTGGGGAAGTGGATACGGTATAGCTGCACAGGCATTAACCGCAGTGGTAAGGGCCAATGATGGACGTGGTCCAGATACAAAGCTTACATCTAGTATTTTAGAGGAGCTTGGTCTTTCTTCTCCAGATGAACTCATCGGGTGGACGTATGCAGACCCATCATGGGCTCGCATTGCAGCACTTGTTCCGGTTGTTGTTTCTTGTGCAGAGGCCGGTGATGAAGTTGCGAATAAGATTCTGTTTGATTCAGTCCAGGAGTTAGGGTTGAGTGTGAAAGCAGTTGTTCAAAGACTTGGCTTGTGTGGTCCAGAGGGAAAAGATTCTTTTCCGCTCGTCATGGTTGGTGGTGTTCTTGAAGCAAACAAAAGGTGGGATATAGGAACGGAAGTCATCAAATGCATCTCCAAGGATTACCCAGGGGCAGTTCCAATTAGGCCTAAGGTTGAGCCTGCAGTTGGAGCAGCATTGCTAGCATGGAATTGTTGCATGAAAGAATCTCTGAAGGAAGCCTTCAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BcrAD_BadFG

Protein Analysis

355

Amino Acids

37.17

Weight (kDa)

5.16

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30540 AT1G30540
fragaria_vesca	FvH4_6g39150
malus_domestica	MD09G1144800.v1.1 MD17G1131300.v1.1
prunus_persica	Prupe.3G183100_v2.0.a1 Prupe.3G183100_v2.0.a1 Prupe.3G183100_v2.0.a1
pyrus_communis	pycom09g06420 pycom17g12410
rosa_chinensis	RchiOBHm_Chr2g0152961
rosa_laevigata	RLG00000020660
rosa_multiflora	Rmu_sc0008143.1_g000001 Rmu_sc0011216.1_g000001 Rmu_ssc0000489.1_g000002
rosa_rugosa	Rorug02G0436500
rosa_samantha	Rh2AG498500 Rh2BG509700 Rh2CG484600 Rh2DG521300
rosa_wichuraiana	Rw2G040910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
Acc36I	ACCTGC	2 cut(s)	232, 518
AccBSI	CCGCTC	1 cut(s)	874
AciI	CCGC	7 cut(s)	57, 69, 93, 219, 251, 585, 872
AcoI	YGGCCR	2 cut(s)	54, 261
AcuI	CTGAAG	1 cut(s)	1064
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	8 cut(s)	49, 157, 225, 286, 471, 539, 706, 998
AgsI	TTSAA	3 cut(s)	830, 899, 1057
AjiI	CACGTC	1 cut(s)	611
AjnI	CCWGG	2 cut(s)	795, 958
Alw21I	GWGCWC	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	6 cut(s)	54, 216, 261, 597, 753, 977
ApeKI	GCWGC	7 cut(s)	189, 221, 413, 518, 569, 719, 1004
Asp700I	GAANNNNTTC	1 cut(s)	862
AspLEI	GCGC	2 cut(s)	65, 310
AspS9I	GGNCC	5 cut(s)	474, 530, 597, 614, 848
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	3 cut(s)	256, 554, 770
AsuII	TTCGAA	1 cut(s)	275
AsuNHI	GCTAGC	1 cut(s)	1012
AvaI	CYCGRG	1 cut(s)	513
AvaII	GGWCC	4 cut(s)	474, 530, 614, 848
AxyI	CCTNAGG	2 cut(s)	538, 981
BalI	TGGCCA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	712
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	359
BbvI	GCAGC	7 cut(s)	176, 208, 425, 530, 556, 731, 1016
BccI	CCATC	3 cut(s)	241, 599, 709
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	2 cut(s)	797, 960
BciVI	GTATCC	1 cut(s)	551
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	158
BfaI	CTAG	4 cut(s)	174, 419, 636, 1013
BfmI	CTRYAG	1 cut(s)	993
BfoI	RGCGCY	2 cut(s)	66, 311
BfuAI	ACCTGC	2 cut(s)	232, 518
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	9 cut(s)	57, 190, 219, 222, 414, 519, 570, 720, 1005
BlsI	GCNGC	9 cut(s)	58, 191, 220, 223, 415, 520, 571, 721, 1006
Bme1390I	CCNGG	3 cut(s)	158, 797, 960
Bme18I	GGWCC	4 cut(s)	474, 530, 614, 848
BmeT110I	CYCGRG	1 cut(s)	513
BmgBI	CACGTC	1 cut(s)	611
BmgT120I	GGNCC	5 cut(s)	474, 530, 597, 614, 848
BmiI	GGNNCC	3 cut(s)	97, 162, 475
BmrFI	CCNGG	3 cut(s)	158, 797, 960
BmsI	GCATC	2 cut(s)	394, 951
BmtI	GCTAGC	1 cut(s)	1016
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	948, 958, 959
BsaWI	WCCGGW	2 cut(s)	314, 730
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	8 cut(s)	49, 157, 225, 286, 471, 539, 706, 998
Bse118I	RCCGGY	5 cut(s)	49, 59, 464, 521, 755
Bse21I	CCTNAGG	2 cut(s)	538, 981
Bse3DI	GCAATG	3 cut(s)	477, 714, 1007
BseBI	CCWGG	2 cut(s)	797, 960
BseDI	CCNNGG	3 cut(s)	948, 958, 959
BseLI	CCNNNNNNNGG	8 cut(s)	49, 157, 225, 286, 471, 539, 706, 998
BseMI	GCAATG	3 cut(s)	477, 714, 1007
BseMII	CTCAG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	7 cut(s)	176, 208, 425, 530, 556, 731, 1016
BseYI	CCCAGC	1 cut(s)	374
BsgI	GTGCAG	4 cut(s)	175, 546, 555, 768
Bsh1285I	CGRYCG	1 cut(s)	284
BshFI	GGCC	6 cut(s)	56, 218, 263, 599, 755, 979
BsiEI	CGRYCG	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	8 cut(s)	50, 60, 158, 315, 465, 522, 731, 756
BsiWI	CGTACG	1 cut(s)	483
BslFI	GGGAC	3 cut(s)	44, 442, 487
BslI	CCNNNNNNNGG	8 cut(s)	49, 157, 225, 286, 471, 539, 706, 998
BsmFI	GGGAC	3 cut(s)	44, 442, 487
BsnI	GGCC	6 cut(s)	56, 218, 263, 599, 755, 979
BsoBI	CYCGRG	1 cut(s)	513
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	42, 712
Bsp143I	GATC	2 cut(s)	281, 334
BspACI	CCGC	7 cut(s)	57, 69, 93, 219, 251, 585, 872
BspANI	GGCC	6 cut(s)	56, 218, 263, 599, 755, 979
BspCNI	CTCAG	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	97, 162, 475
BspMAI	CTGCAG	1 cut(s)	997
BspMI	ACCTGC	2 cut(s)	232, 518
BspOI	GCTAGC	1 cut(s)	1016
BspT104I	TTCGAA	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	874
BsrDI	GCAATG	3 cut(s)	477, 714, 1007
BsrFI	RCCGGY	5 cut(s)	49, 59, 464, 521, 755
BssAI	RCCGGY	5 cut(s)	49, 59, 464, 521, 755
BssECI	CCNNGG	3 cut(s)	948, 958, 959
BssMI	GATC	2 cut(s)	281, 334
BssT1I	CCWWGG	1 cut(s)	948
Bst2UI	CCWGG	2 cut(s)	797, 960
Bst4CI	ACNGT	3 cut(s)	109, 503, 563
BstAPI	GCANNNNNTGC	2 cut(s)	46, 524
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	8 cut(s)	61, 67, 122, 187, 466, 712, 993, 1014
BstDEI	CTNAG	3 cut(s)	359, 538, 981
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstH2I	RGCGCY	2 cut(s)	66, 311
BstHHI	GCGC	2 cut(s)	65, 310
BstKTI	GATC	2 cut(s)	284, 337
BstMBI	GATC	2 cut(s)	281, 334
BstMCI	CGRYCG	1 cut(s)	284
BstNI	CCWGG	2 cut(s)	797, 960
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	3 cut(s)	156, 795, 958
BstSFI	CTRYAG	1 cut(s)	993
BstV1I	GCAGC	7 cut(s)	176, 208, 425, 530, 556, 731, 1016
BstV2I	GAAGAC	1 cut(s)	504
Bsu36I	CCTNAGG	2 cut(s)	538, 981
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	6 cut(s)	56, 218, 263, 599, 755, 979
BtrI	CACGTC	1 cut(s)	611
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	2 cut(s)	330, 594
BveI	ACCTGC	2 cut(s)	232, 518
Cac8I	GCNNGC	8 cut(s)	61, 67, 122, 187, 466, 712, 993, 1014
CfoI	GCGC	2 cut(s)	65, 310
Cfr10I	RCCGGY	5 cut(s)	49, 59, 464, 521, 755
Cfr13I	GGNCC	5 cut(s)	474, 530, 597, 614, 848
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	7 cut(s)	121, 380, 446, 705, 880, 1017, 1030
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	3 cut(s)	359, 538, 981
DpnI	GATC	2 cut(s)	283, 336
DpnII	GATC	2 cut(s)	281, 334
EaeI	YGGCCR	2 cut(s)	54, 261
EciI	GGCGGA	2 cut(s)	108, 266
Eco130I	CCWWGG	1 cut(s)	948
Eco147I	AGGCCT	1 cut(s)	979
Eco24I	GRGCYC	1 cut(s)	712
Eco47I	GGWCC	4 cut(s)	474, 530, 614, 848
Eco57I	CTGAAG	1 cut(s)	1064
Eco81I	CCTNAGG	2 cut(s)	538, 981
Eco88I	CYCGRG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	795, 958
EcoT14I	CCWWGG	1 cut(s)	948
EcoT22I	ATGCAT	1 cut(s)	944
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	948
FaeI	CATG	7 cut(s)	124, 383, 449, 708, 883, 1020, 1033
FalI	AAGNNNNNCTT	1 cut(s)	1037
FaqI	GGGAC	3 cut(s)	44, 442, 487
FatI	CATG	7 cut(s)	120, 379, 445, 704, 879, 1016, 1029
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	9 cut(s)	57, 190, 219, 222, 414, 519, 570, 720, 1005
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	9 cut(s)	57, 190, 219, 222, 414, 519, 570, 720, 1005
FspBI	CTAG	4 cut(s)	174, 419, 636, 1013
GlaI	GCGC	2 cut(s)	64, 309
GluI	GCNGC	9 cut(s)	57, 190, 219, 222, 414, 519, 570, 720, 1005
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	2 cut(s)	66, 311
HaeIII	GGCC	6 cut(s)	56, 218, 263, 599, 755, 979
HapII	CCGG	8 cut(s)	50, 60, 158, 315, 465, 522, 731, 756
HhaI	GCGC	2 cut(s)	65, 310
Hin1II	CATG	7 cut(s)	124, 383, 449, 708, 883, 1020, 1033
Hin6I	GCGC	2 cut(s)	63, 308
HinP1I	GCGC	2 cut(s)	63, 308
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	2 cut(s)	440, 626
HinfI	GANTC	4 cut(s)	778, 788, 863, 1037
HpaII	CCGG	8 cut(s)	50, 60, 158, 315, 465, 522, 731, 756
HphI	GGTGA	3 cut(s)	256, 554, 770
Hpy166II	GTNNAC	3 cut(s)	322, 492, 687
Hpy188I	TCNGA	3 cut(s)	142, 399, 1044
Hpy188III	TCNNGA	5 cut(s)	617, 668, 851, 896, 1057
Hpy8I	GTNNAC	3 cut(s)	322, 492, 687
HpyAV	CCTTC	3 cut(s)	145, 1039, 1063
HpyCH4III	ACNGT	3 cut(s)	109, 503, 563
HpyCH4IV	ACGT	2 cut(s)	610, 689
HpyF3I	CTNAG	3 cut(s)	359, 538, 981
HpySE526I	ACGT	2 cut(s)	610, 689
Hsp92II	CATG	7 cut(s)	124, 383, 449, 708, 883, 1020, 1033
HspAI	GCGC	2 cut(s)	63, 308
KroI	GCCGGC	2 cut(s)	59, 464
KroNI	GCCGGC	2 cut(s)	61, 466
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	281, 334
LmnI	GCTCC	3 cut(s)	238, 649, 1001
Lsp1109I	GCAGC	7 cut(s)	176, 208, 425, 530, 556, 731, 1016
LweI	GCATC	2 cut(s)	394, 951
MaeI	CTAG	4 cut(s)	174, 419, 636, 1013
MaeII	ACGT	2 cut(s)	610, 689
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	283, 336
MbiI	CCGCTC	1 cut(s)	874
MboI	GATC	2 cut(s)	281, 334
MboII	GAAGA	2 cut(s)	509, 654
MhlI	GDGCHC	2 cut(s)	42, 712
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	3 cut(s)	459, 972, 1021
MluNI	TGGCCA	1 cut(s)	263
MmeI	TCCRAC	2 cut(s)	165, 979
Mox20I	TGGCCA	1 cut(s)	263
Mph1103I	ATGCAT	1 cut(s)	944
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	2 cut(s)	59, 464
MroXI	GAANNNNTTC	1 cut(s)	862
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	1 cut(s)	581
MslI	CAYNNNNRTG	2 cut(s)	119, 450
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	8 cut(s)	50, 60, 158, 315, 465, 522, 731, 756
MspR9I	CCNGG	3 cut(s)	158, 797, 960
MvaI	CCWGG	2 cut(s)	797, 960
NaeI	GCCGGC	2 cut(s)	61, 466
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	2 cut(s)	281, 334
NgoMIV	GCCGGC	2 cut(s)	59, 464
NheI	GCTAGC	1 cut(s)	1012
NlaIII	CATG	7 cut(s)	124, 383, 449, 708, 883, 1020, 1033
NlaIV	GGNNCC	3 cut(s)	97, 162, 475
NsiI	ATGCAT	1 cut(s)	944
NspI	RCATGY	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	232
PasI	CCCWGGG	1 cut(s)	959
PceI	AGGCCT	1 cut(s)	979
PdiI	GCCGGC	2 cut(s)	61, 466
PdmI	GAANNNNTTC	1 cut(s)	862
PfeI	GAWTC	4 cut(s)	778, 788, 863, 1037
Pfl23II	CGTACG	1 cut(s)	483
PflFI	GACNNNGTC	1 cut(s)	612
PfoI	TCCNGGA	1 cut(s)	795
PkrI	GCNGC	9 cut(s)	58, 191, 220, 223, 415, 520, 571, 721, 1006
Ple19I	CGATCG	1 cut(s)	284
PpuMI	RGGWCCY	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	2 cut(s)	795, 958
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	2 cut(s)	795, 958
PspLI	CGTACG	1 cut(s)	483
PspN4I	GGNNCC	3 cut(s)	97, 162, 475
PspPI	GGNCC	5 cut(s)	474, 530, 597, 614, 848
PspPPI	RGGWCCY	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	997
PsyI	GACNNNGTC	1 cut(s)	612
PvuI	CGATCG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
RseI	CAYNNNNRTG	2 cut(s)	119, 450
SaqAI	TTAA	1 cut(s)	581
SatI	GCNGC	9 cut(s)	57, 190, 219, 222, 414, 519, 570, 720, 1005
Sau3AI	GATC	2 cut(s)	281, 334
Sau96I	GGNCC	5 cut(s)	474, 530, 597, 614, 848
ScrFI	CCNGG	3 cut(s)	158, 797, 960
SduI	GDGCHC	2 cut(s)	42, 712
SfaNI	GCATC	2 cut(s)	394, 951
SfcI	CTRYAG	1 cut(s)	993
SfuI	TTCGAA	1 cut(s)	275
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	4 cut(s)	474, 530, 614, 848
SmiMI	CAYNNNNRTG	2 cut(s)	119, 450
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	3 cut(s)	459, 972, 1021
SseBI	AGGCCT	1 cut(s)	979
SsiI	CCGC	7 cut(s)	57, 69, 93, 219, 251, 585, 872
SspMI	CTAG	4 cut(s)	174, 419, 636, 1013
StuI	AGGCCT	1 cut(s)	979
StyD4I	CCNGG	3 cut(s)	156, 795, 958
StyI	CCWWGG	1 cut(s)	948
TaaI	ACNGT	3 cut(s)	109, 503, 563
TaiI	ACGT	2 cut(s)	613, 692
TaqI	TCGA	3 cut(s)	36, 275, 292
TasI	AATT	3 cut(s)	459, 972, 1021
TauI	GCSGC	2 cut(s)	59, 221
TfiI	GAWTC	4 cut(s)	778, 788, 863, 1037
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TscAI	CASTG	2 cut(s)	337, 594
TseI	GCWGC	7 cut(s)	189, 221, 413, 518, 569, 719, 1004
TspDTI	ATGAA	5 cut(s)	17, 434, 687, 777, 1046
TspGWI	ACGGA	2 cut(s)	33, 941
TspRI	CASTG	2 cut(s)	337, 594
Tth111I	GACNNNGTC	1 cut(s)	612
VpaK11BI	GGWCC	4 cut(s)	474, 530, 614, 848
XagI	CCTNNNNNAGG	1 cut(s)	537
XceI	RCATGY	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	862
XspI	CTAG	4 cut(s)	174, 419, 636, 1013
Zsp2I	ATGCAT	1 cut(s)	944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.