AT1G31175

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018318
Physical Location & Seq
Forward (+)
11140471 .. 11142716
2246 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31175.1

Sequence Viewer

Length: 357 bp
ATGGGCTTACAAAACAAAAGCCCAAACCCAACTAGTGAGTTACATCGTGAGATGAGACGGATTCACACCGGAAAAATCAGAGAGATTCCGATGAAATCTTGCGATCGGTTGGAGGAAGCGTTGTTGCAGTGCCACCGTCGGATGCCGGAAGGACCGGCAAGGAGATCCGGTTGCAGACATTTGAACAAGGCGTTTGCGGAGTGCGTGGTGGCGGAGGCTTGTCCGGAGGAATCAGAGGCGGTGAGGTCTCTTTGCTCTAGCGGCGGAACAAGCCTTAAGCGTAAACAGTGCGAATACGCTCAGCTTTCACTTTCTCTCTGTCTCTCTCGCCATCAGCGAGAGTTTGAGCAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

118

Amino Acids

13.49

Weight (kDa)

9.06

Isoelectric Point (pI)

91.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31175 AT1G31175
malus_domestica MD05G1252500.v1.1 MD10G1233500.v1.1
prunus_persica Prupe.4G111600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0020061
rosa_roxburghii Rroxscaffold_1G00058140
rosa_samantha Rh5BG146200 Rh5DG145600
rosa_wichuraiana Rw5G012950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 5 cut(s) 197, 212, 239, 261, 264
AclWI GGATC 1 cut(s) 159
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 184
AhlI ACTAGT 1 cut(s) 32
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw26I GTCTC 3 cut(s) 49, 252, 326
AlwI GGATC 1 cut(s) 159
Aor13HI TCCGGA 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 152
BccI CCATC 1 cut(s) 339
BcoDI GTCTC 3 cut(s) 49, 252, 326
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 2 cut(s) 33, 258
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 262, 350
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 2 cut(s) 263, 351
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmsI GCATC 1 cut(s) 132
Bpu1102I GCTNAGC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 252
BsaWI WCCGGW 3 cut(s) 68, 167, 223
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 154, 184
Bse118I RCCGGY 1 cut(s) 154
BseAI TCCGGA 1 cut(s) 223
BseGI GGATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 314
Bsh1285I CGRYCG 1 cut(s) 106
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 5 cut(s) 69, 146, 155, 168, 224
BsmAI GTCTC 3 cut(s) 49, 252, 326
BsmBI CGTCTC 1 cut(s) 49
Bso31I GGTCTC 1 cut(s) 252
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 2 cut(s) 103, 164
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 5 cut(s) 197, 212, 239, 261, 264
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 223
BspPI GGATC 1 cut(s) 159
BspTI CTTAAG 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 154
BssMI GATC 2 cut(s) 103, 164
Bst4CI ACNGT 2 cut(s) 137, 288
BstAFI CTTAAG 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 2 cut(s) 106, 167
BstMAI GTCTC 3 cut(s) 49, 252, 326
BstMBI GATC 2 cut(s) 103, 164
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 261, 270
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 2 cut(s) 134, 293
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 152
CviJI RGCY 5 cut(s) 6, 21, 218, 273, 304
CviKI_1 RGCY 5 cut(s) 6, 21, 218, 273, 304
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 105, 166
DpnII GATC 2 cut(s) 103, 164
EciI GGCGGA 2 cut(s) 227, 279
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 262, 350
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 262, 350
FspBI CTAG 2 cut(s) 33, 258
GluI GCNGC 2 cut(s) 262, 350
HapII CCGG 5 cut(s) 69, 146, 155, 168, 224
HinfI GANTC 3 cut(s) 61, 85, 230
HpaII CCGG 5 cut(s) 69, 146, 155, 168, 224
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 4 cut(s) 80, 90, 141, 235
Hpy188III TCNNGA 2 cut(s) 47, 224
Hpy8I GTNNAC 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 2 cut(s) 137, 288
HpyCH4V TGCA 2 cut(s) 127, 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 270
HpyF3I CTNAG 1 cut(s) 300
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 103, 164
LpnPI CCDG 5 cut(s) 82, 159, 168, 181, 237
LweI GCATC 1 cut(s) 132
MaeI CTAG 2 cut(s) 33, 258
MaeIII GTNAC 1 cut(s) 39
MalI GATC 2 cut(s) 105, 166
MboI GATC 2 cut(s) 103, 164
MflI RGATCY 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 90, 119
MnlI CCTC 5 cut(s) 106, 208, 220, 229, 237
MroI TCCGGA 1 cut(s) 223
MseI TTAA 1 cut(s) 276
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 5 cut(s) 69, 146, 155, 168, 224
MwoI GCNNNNNNNGC 2 cut(s) 261, 270
NdeII GATC 2 cut(s) 103, 164
PcsI WCGNNNNNNNCGW 1 cut(s) 334
PfeI GAWTC 3 cut(s) 61, 85, 230
PkrI GCNGC 2 cut(s) 263, 351
Ple19I CGATCG 1 cut(s) 106
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 164
PvuI CGATCG 1 cut(s) 106
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 2 cut(s) 262, 350
Sau3AI GATC 2 cut(s) 103, 164
Sau96I GGNCC 1 cut(s) 152
SetI ASST 2 cut(s) 248, 306
SfaNI GCATC 1 cut(s) 132
SinI GGWCC 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 32
SsiI CCGC 5 cut(s) 197, 212, 239, 261, 264
SspMI CTAG 2 cut(s) 33, 258
TaaI ACNGT 2 cut(s) 137, 288
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 3 cut(s) 61, 85, 230
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 2 cut(s) 134, 293
TseI GCWGC 1 cut(s) 349
TspDTI ATGAA 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 2 cut(s) 134, 293
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 152
XspI CTAG 2 cut(s) 33, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.